webservices/compbio/ws/client/ServicesUtil.java

   1 package compbio.ws.client;\r
   2 \r
   3 import java.io.File;\r
   4 \r
   5 import compbio.engine.client.ConfExecutable;\r
   6 import compbio.engine.client.Executable;\r
   7 import compbio.runner.conservation.AACon;\r
   8 import compbio.runner.disorder.Disembl;\r
   9 import compbio.runner.disorder.GlobPlot;\r
  10 import compbio.runner.disorder.IUPred;\r
  11 import compbio.runner.disorder.Jronn;\r
  12 import compbio.runner.msa.ClustalO;\r
  13 import compbio.runner.msa.ClustalW;\r
  14 import compbio.runner.msa.Mafft;\r
  15 import compbio.runner.msa.Muscle;\r
  16 import compbio.runner.msa.Probcons;\r
  17 import compbio.runner.msa.Tcoffee;\r
  18 \r
  19 public class ServicesUtil {\r
  20 \r
  21         public static Services getServiceByRunner(\r
  22                         Class<Executable<?>> runnerClassName) {\r
  23                 assert runnerClassName != null;\r
  24                 String sname = runnerClassName.getSimpleName().toLowerCase();\r
  25                 for (Services service : Services.values()) {\r
  26                         if (service.toString().toLowerCase().contains(sname)) {\r
  27                                 return service;\r
  28                         }\r
  29                 }\r
  30                 return null;\r
  31         }\r
  32 \r
  33         public static Class<? extends Executable<?>> getServiceImpl(Services service) {\r
  34                 switch (service) {\r
  35                         case AAConWS :\r
  36                                 return AACon.class;\r
  37                         case ClustalOWS :\r
  38                                 return ClustalO.class;\r
  39                         case ClustalWS :\r
  40                                 return ClustalW.class;\r
  41                         case MafftWS :\r
  42                                 return Mafft.class;\r
  43                         case MuscleWS :\r
  44                                 return Muscle.class;\r
  45                         case TcoffeeWS :\r
  46                                 return Tcoffee.class;\r
  47                         case ProbconsWS :\r
  48                                 return Probcons.class;\r
  49                         case DisemblWS :\r
  50                                 return Disembl.class;\r
  51                         case GlobPlotWS :\r
  52                                 return GlobPlot.class;\r
  53                         case JronnWS :\r
  54                                 return Jronn.class;\r
  55                         case IUPredWS :\r
  56                                 return IUPred.class;\r
  57                         default :\r
  58                                 throw new RuntimeException(\r
  59                                                 "Unknown web service implementation class for service: "\r
  60                                                                 + service);\r
  61                 }\r
  62         }\r
  63 \r
  64         public static Class<? extends Executable<?>> getRunnerByJobDirectory(\r
  65                         File jobdir) {\r
  66                 Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  67                 return getServiceImpl(service);\r
  68         }\r
  69 \r
  70         private static String getRunnerNameByJobDirectory(File jobdir) {\r
  71                 String name = jobdir.getName().split("#")[0];\r
  72 \r
  73                 if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {\r
  74                         assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;\r
  75                         name = name.substring(1);\r
  76                 }\r
  77                 return name;\r
  78         }\r
  79 \r
  80         public static Services getServiceByJobDirectory(File jobdir) {\r
  81                 return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  82         }\r
  83 \r
  84         private static Services getServiceByRunnerName(String name) {\r
  85                 for (Services service : Services.values()) {\r
  86                         String runnerName = getServiceImpl(service).getSimpleName()\r
  87                                         .toLowerCase();\r
  88                         name = name.trim().toLowerCase();\r
  89                         if (name.startsWith(runnerName)) {\r
  90                                 return service;\r
  91                         }\r
  92                 }\r
  93                 return null;\r
  94         }\r
  95 \r
  96 }\r