webservices/compbio/ws/client/ServicesUtil.java

   1 package compbio.ws.client;\r
   2 \r
   3 import java.io.File;\r
   4 \r
   5 import compbio.engine.client.ConfExecutable;\r
   6 import compbio.engine.client.Executable;\r
   7 import compbio.runner.conservation.AACon;\r
   8 import compbio.runner.disorder.Disembl;\r
   9 import compbio.runner.disorder.GlobPlot;\r
  10 import compbio.runner.disorder.IUPred;\r
  11 import compbio.runner.disorder.Jronn;\r
  12 import compbio.runner.msa.ClustalO;\r
  13 import compbio.runner.msa.ClustalW;\r
  14 import compbio.runner.msa.Mafft;\r
  15 import compbio.runner.msa.Muscle;\r
  16 import compbio.runner.msa.Probcons;\r
  17 import compbio.runner.msa.Tcoffee;\r
  18 import compbio.runner.structure.RNAalifold;\r
  19 \r
  20 public class ServicesUtil {\r
  21 \r
  22         public static Services getServiceByRunner(Class<? extends Executable> class1) {\r
  23                 assert class1 != null;\r
  24                 String sname = class1.getSimpleName().toLowerCase();\r
  25                 for (Services service : Services.values()) {\r
  26                         if (service.toString().toLowerCase().contains(sname)) {\r
  27                                 return service;\r
  28                         }\r
  29                 }\r
  30                 return null;\r
  31         }\r
  32 \r
  33         public static Class<? extends Executable<?>> getServiceImpl(Services service) {\r
  34                 switch (service) {\r
  35                         case AAConWS :\r
  36                                 return AACon.class;\r
  37                         case ClustalOWS :\r
  38                                 return ClustalO.class;\r
  39                         case ClustalWS :\r
  40                                 return ClustalW.class;\r
  41                         case MafftWS :\r
  42                                 return Mafft.class;\r
  43                         case MuscleWS :\r
  44                                 return Muscle.class;\r
  45                         case TcoffeeWS :\r
  46                                 return Tcoffee.class;\r
  47                         case ProbconsWS :\r
  48                                 return Probcons.class;\r
  49                         case DisemblWS :\r
  50                                 return Disembl.class;\r
  51                         case GlobPlotWS :\r
  52                                 return GlobPlot.class;\r
  53                         case JronnWS :\r
  54                                 return Jronn.class;\r
  55                         case IUPredWS :\r
  56                                 return IUPred.class;\r
  57                         case RNAalifoldWS :\r
  58                                 return RNAalifold.class;\r
  59                         default :\r
  60                                 throw new RuntimeException(\r
  61                                                 "Unknown web service implementation class for service: "\r
  62                                                                 + service);\r
  63                 }\r
  64         }\r
  65 \r
  66         public static Class<? extends Executable<?>> getRunnerByJobDirectory(\r
  67                         File jobdir) {\r
  68                 Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  69                 return getServiceImpl(service);\r
  70         }\r
  71 \r
  72         private static String getRunnerNameByJobDirectory(File jobdir) {\r
  73                 String name = jobdir.getName().split("#")[0];\r
  74 \r
  75                 if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {\r
  76                         assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;\r
  77                         name = name.substring(1);\r
  78                 }\r
  79                 return name;\r
  80         }\r
  81 \r
  82         public static Services getServiceByJobDirectory(File jobdir) {\r
  83                 return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  84         }\r
  85 \r
  86         private static Services getServiceByRunnerName(String name) {\r
  87                 for (Services service : Services.values()) {\r
  88                         String runnerName = getServiceImpl(service).getSimpleName()\r
  89                                         .toLowerCase();\r
  90                         name = name.trim().toLowerCase();\r
  91                         if (name.startsWith(runnerName)) {\r
  92                                 return service;\r
  93                         }\r
  94                 }\r
  95                 return null;\r
  96         }\r
  97 \r
  98 }\r