webservices/compbio/ws/server/GlobPlotWS.java

   1 package compbio.ws.server;\r
   2 \r
   3 import java.util.List;\r
   4 \r
   5 import javax.jws.WebService;\r
   6 \r
   7 import org.apache.log4j.Logger;\r
   8 \r
   9 import compbio.data.msa.SequenceAnnotation;\r
  10 import compbio.data.sequence.FastaSequence;\r
  11 import compbio.metadata.JobSubmissionException;\r
  12 import compbio.metadata.LimitExceededException;\r
  13 import compbio.metadata.Option;\r
  14 import compbio.metadata.Preset;\r
  15 import compbio.metadata.UnsupportedRuntimeException;\r
  16 import compbio.metadata.WrongParameterException;\r
  17 import compbio.runner.disorder.GlobPlot;\r
  18 \r
  19 @WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = "http://msa.data.compbio/01/12/2010/", serviceName = "GlobPlotWS")\r
  20 public class GlobPlotWS extends SequenceAnnotationService<GlobPlot>\r
  21                 implements\r
  22                         SequenceAnnotation<GlobPlot> {\r
  23 \r
  24         private static Logger log = Logger.getLogger(GlobPlotWS.class);\r
  25 \r
  26         public GlobPlotWS() {\r
  27                 super(new GlobPlot(), log);\r
  28         }\r
  29 \r
  30         /*\r
  31          * No options are supported, thus the result of this call will be as simple\r
  32          * call to analize without parameters\r
  33          */\r
  34         @Override\r
  35         public String customAnalize(List<FastaSequence> sequences,\r
  36                         List<Option<GlobPlot>> options) throws UnsupportedRuntimeException,\r
  37                         LimitExceededException, JobSubmissionException,\r
  38                         WrongParameterException {\r
  39                 return analize(sequences);\r
  40         }\r
  41 \r
  42         /*\r
  43          * No presets are supported, thus the result of this call will be as simple\r
  44          * call to analize without parameters\r
  45          */\r
  46         @Override\r
  47         public String presetAnalize(List<FastaSequence> sequences,\r
  48                         Preset<GlobPlot> preset) throws UnsupportedRuntimeException,\r
  49                         LimitExceededException, JobSubmissionException,\r
  50                         WrongParameterException {\r
  51 \r
  52                 return analize(sequences);\r
  53         }\r
  54 \r
  55 }\r