webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="pullExecStatistics">
  65     <xs:sequence>
  66       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
  67       <xs:element name="position" type="xs:long"/>
  68     </xs:sequence>
  69   </xs:complexType>
  70
  71   <xs:complexType name="pullExecStatisticsResponse">
  72     <xs:sequence>
  73       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
  74     </xs:sequence>
  75   </xs:complexType>
  76
  77   <xs:complexType name="chunkHolder">
  78     <xs:sequence>
  79       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
  80       <xs:element name="position" type="xs:long"/>
  81     </xs:sequence>
  82   </xs:complexType>
  83
  84   <xs:complexType name="customAlign">
  85     <xs:sequence>
  86       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
  87       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
  88     </xs:sequence>
  89   </xs:complexType>
  90
  91   <xs:complexType name="fastaSequence">
  92     <xs:sequence>
  93       <xs:element name="id" type="xs:string" minOccurs="0"/>
  94       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
  95     </xs:sequence>
  96   </xs:complexType>
  97
  98   <xs:complexType name="option">
  99     <xs:sequence>
 100       <xs:element name="description" type="xs:string"/>
 101       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
 102       <xs:element name="name" type="xs:string"/>
 103       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
 104       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
 105     </xs:sequence>
 106     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
 107   </xs:complexType>
 108
 109   <xs:complexType name="customAlignResponse">
 110     <xs:sequence>
 111       <xs:element name="return" type="xs:string" minOccurs="0"/>
 112     </xs:sequence>
 113   </xs:complexType>
 114
 115   <xs:complexType name="UnsupportedRuntimeException">
 116     <xs:sequence>
 117       <xs:element name="message" type="xs:string" minOccurs="0"/>
 118     </xs:sequence>
 119   </xs:complexType>
 120
 121   <xs:complexType name="LimitExceededException">
 122     <xs:sequence>
 123       <xs:element name="actualNumberofSequences" type="xs:int"/>
 124       <xs:element name="message" type="xs:string" minOccurs="0"/>
 125       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 126       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 127       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 128     </xs:sequence>
 129   </xs:complexType>
 130
 131   <xs:complexType name="JobSubmissionException">
 132     <xs:sequence>
 133       <xs:element name="message" type="xs:string" minOccurs="0"/>
 134     </xs:sequence>
 135   </xs:complexType>
 136
 137   <xs:complexType name="WrongParameterException">
 138     <xs:sequence>
 139       <xs:element name="message" type="xs:string" minOccurs="0"/>
 140     </xs:sequence>
 141   </xs:complexType>
 142
 143   <xs:complexType name="align">
 144     <xs:sequence>
 145       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 146     </xs:sequence>
 147   </xs:complexType>
 148
 149   <xs:complexType name="alignResponse">
 150     <xs:sequence>
 151       <xs:element name="return" type="xs:string" minOccurs="0"/>
 152     </xs:sequence>
 153   </xs:complexType>
 154
 155   <xs:complexType name="getLimits">
 156     <xs:sequence/>
 157   </xs:complexType>
 158
 159   <xs:complexType name="getLimitsResponse">
 160     <xs:sequence>
 161       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 162     </xs:sequence>
 163   </xs:complexType>
 164
 165   <xs:complexType name="limitsManager">
 166     <xs:sequence>
 167       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 168       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 169     </xs:sequence>
 170   </xs:complexType>
 171
 172   <xs:complexType name="limit">
 173     <xs:sequence>
 174       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 175       <xs:element name="seqNumber" type="xs:int"/>
 176       <xs:element name="seqLength" type="xs:int"/>
 177     </xs:sequence>
 178     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 179   </xs:complexType>
 180
 181   <xs:complexType name="getPresets">
 182     <xs:sequence/>
 183   </xs:complexType>
 184
 185   <xs:complexType name="getPresetsResponse">
 186     <xs:sequence>
 187       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 188     </xs:sequence>
 189   </xs:complexType>
 190
 191   <xs:complexType name="presetManager">
 192     <xs:sequence>
 193       <xs:element name="runnerClassName" type="xs:string"/>
 194       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 195     </xs:sequence>
 196   </xs:complexType>
 197
 198   <xs:complexType name="preset">
 199     <xs:sequence>
 200       <xs:element name="name" type="xs:string"/>
 201       <xs:element name="description" type="xs:string" minOccurs="0"/>
 202       <xs:element name="optlist" minOccurs="0">
 203         <xs:complexType>
 204           <xs:sequence>
 205             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 206           </xs:sequence>
 207         </xs:complexType>
 208       </xs:element>
 209     </xs:sequence>
 210   </xs:complexType>
 211
 212   <xs:complexType name="getLimit">
 213     <xs:sequence>
 214       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 215     </xs:sequence>
 216   </xs:complexType>
 217
 218   <xs:complexType name="getLimitResponse">
 219     <xs:sequence>
 220       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 221     </xs:sequence>
 222   </xs:complexType>
 223
 224   <xs:complexType name="cancelJob">
 225     <xs:sequence>
 226       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 227     </xs:sequence>
 228   </xs:complexType>
 229
 230   <xs:complexType name="cancelJobResponse">
 231     <xs:sequence>
 232       <xs:element name="return" type="xs:boolean"/>
 233     </xs:sequence>
 234   </xs:complexType>
 235
 236   <xs:complexType name="presetAlign">
 237     <xs:sequence>
 238       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 239       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 240     </xs:sequence>
 241   </xs:complexType>
 242
 243   <xs:complexType name="presetAlignResponse">
 244     <xs:sequence>
 245       <xs:element name="return" type="xs:string" minOccurs="0"/>
 246     </xs:sequence>
 247   </xs:complexType>
 248
 249   <xs:complexType name="getRunnerOptions">
 250     <xs:sequence/>
 251   </xs:complexType>
 252
 253   <xs:complexType name="getRunnerOptionsResponse">
 254     <xs:sequence>
 255       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
 256     </xs:sequence>
 257   </xs:complexType>
 258
 259   <xs:complexType name="runnerConfig">
 260     <xs:sequence>
 261       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 262       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 263       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
 264       <xs:element name="runnerClassName" type="xs:string"/>
 265     </xs:sequence>
 266   </xs:complexType>
 267
 268   <xs:complexType name="parameter">
 269     <xs:complexContent>
 270       <xs:extension base="tns:option">
 271         <xs:sequence>
 272           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 273           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 274         </xs:sequence>
 275       </xs:extension>
 276     </xs:complexContent>
 277   </xs:complexType>
 278
 279   <xs:complexType name="valueConstrain">
 280     <xs:sequence>
 281       <xs:element name="type" type="tns:type"/>
 282       <xs:element name="max" type="xs:string" minOccurs="0"/>
 283       <xs:element name="min" type="xs:string" minOccurs="0"/>
 284     </xs:sequence>
 285   </xs:complexType>
 286
 287   <xs:complexType name="getResult">
 288     <xs:sequence>
 289       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 290     </xs:sequence>
 291   </xs:complexType>
 292
 293   <xs:complexType name="getResultResponse">
 294     <xs:sequence>
 295       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 296     </xs:sequence>
 297   </xs:complexType>
 298
 299   <xs:complexType name="alignment" final="extension restriction">
 300     <xs:sequence>
 301       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 302       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 303     </xs:sequence>
 304   </xs:complexType>
 305
 306   <xs:complexType name="alignmentMetadata">
 307     <xs:sequence>
 308       <xs:element name="program" type="tns:program" minOccurs="0"/>
 309       <xs:element name="gapchar" type="xs:unsignedShort"/>
 310     </xs:sequence>
 311   </xs:complexType>
 312
 313   <xs:complexType name="ResultNotAvailableException">
 314     <xs:sequence>
 315       <xs:element name="message" type="xs:string" minOccurs="0"/>
 316     </xs:sequence>
 317   </xs:complexType>
 318
 319   <xs:complexType name="getJobStatus">
 320     <xs:sequence>
 321       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 322     </xs:sequence>
 323   </xs:complexType>
 324
 325   <xs:complexType name="getJobStatusResponse">
 326     <xs:sequence>
 327       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
 328     </xs:sequence>
 329   </xs:complexType>
 330
 331   <xs:simpleType name="type">
 332     <xs:restriction base="xs:string">
 333       <xs:enumeration value="Integer"/>
 334       <xs:enumeration value="Float"/>
 335     </xs:restriction>
 336   </xs:simpleType>
 337
 338   <xs:simpleType name="program">
 339     <xs:restriction base="xs:string">
 340       <xs:enumeration value="CLUSTAL"/>
 341       <xs:enumeration value="MAFFT"/>
 342       <xs:enumeration value="MUSCLE"/>
 343       <xs:enumeration value="Tcoffee"/>
 344       <xs:enumeration value="Probcons"/>
 345     </xs:restriction>
 346   </xs:simpleType>
 347
 348   <xs:simpleType name="jobStatus">
 349     <xs:restriction base="xs:string">
 350       <xs:enumeration value="PENDING"/>
 351       <xs:enumeration value="RUNNING"/>
 352       <xs:enumeration value="CANCELLED"/>
 353       <xs:enumeration value="FINISHED"/>
 354       <xs:enumeration value="FAILED"/>
 355       <xs:enumeration value="UNDEFINED"/>
 356       <xs:enumeration value="STARTED"/>
 357       <xs:enumeration value="SUBMITTED"/>
 358       <xs:enumeration value="COLLECTED"/>
 359     </xs:restriction>
 360   </xs:simpleType>
 361 </xs:schema>
 362