website/archive/binaries/mac/src/muscle/scoremx.cpp

   1 #include "muscle.h"\r
   2 #include "profile.h"\r
   3 \r
   4 extern SCOREMATRIX VTML_LA;\r
   5 extern SCOREMATRIX PAM200;\r
   6 extern SCOREMATRIX PAM200NoCenter;\r
   7 extern SCOREMATRIX VTML_SP;\r
   8 extern SCOREMATRIX VTML_SPNoCenter;\r
   9 extern SCOREMATRIX NUC_SP;\r
  10 \r
  11 PTR_SCOREMATRIX g_ptrScoreMatrix;\r
  12 \r
  13 void SetScoreMatrix()\r
  14         {\r
  15         switch (g_PPScore)\r
  16                 {\r
  17         case PPSCORE_LE:\r
  18                 g_ptrScoreMatrix = &VTML_LA;\r
  19                 break;\r
  20 \r
  21         case PPSCORE_SP:\r
  22                 if (g_bPrecompiledCenter)\r
  23                         g_ptrScoreMatrix = &PAM200;\r
  24                 else\r
  25                         g_ptrScoreMatrix = &PAM200NoCenter;\r
  26                 break;\r
  27 \r
  28         case PPSCORE_SV:\r
  29                 if (g_bPrecompiledCenter)\r
  30                         g_ptrScoreMatrix = &VTML_SP;\r
  31                 else\r
  32                         g_ptrScoreMatrix = &VTML_SPNoCenter;\r
  33                 break;\r
  34 \r
  35         case PPSCORE_SPN:\r
  36                 if (g_bPrecompiledCenter)\r
  37                         g_ptrScoreMatrix = &NUC_SP;\r
  38                 else\r
  39                         Quit("SPN requires precompiled center");\r
  40                 break;\r
  41 \r
  42         default:\r
  43                 Quit("Invalid g_PPScore");\r
  44                 }\r
  45         }\r