website/dm_javadoc/compbio/data/msa/jaxws/PresetAnalize.html

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   7 PresetAnalize\r
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  18         parent.document.title="PresetAnalize";\r
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  58 &nbsp;<A HREF="../../../../compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws"><B>PREV CLASS</B></A>&nbsp;\r
  59 &nbsp;<A HREF="../../../../compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws"><B>NEXT CLASS</B></A></FONT></TD>\r
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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  89 <H2>\r
  90 <FONT SIZE="-1">\r
  91 compbio.data.msa.jaxws</FONT>\r
  92 <BR>\r
  93 Class PresetAnalize</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.msa.jaxws.PresetAnalize</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public class <B>PresetAnalize</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 <HR>\r
 105 \r
 106 <P>\r
 107 \r
 108 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 109 \r
 110 <A NAME="constructor_summary"><!-- --></A>\r
 111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 112 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 114 <B>Constructor Summary</B></FONT></TH>\r
 115 </TR>\r
 116 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 117 <TD><CODE><B><A HREF="../../../../compbio/data/msa/jaxws/PresetAnalize.html#PresetAnalize()">PresetAnalize</A></B>()</CODE>\r
 118 \r
 119 <BR>\r
 120 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 121 </TR>\r
 122 </TABLE>\r
 123 &nbsp;\r
 124 <!-- ========== METHOD SUMMARY =========== -->\r
 125 \r
 126 <A NAME="method_summary"><!-- --></A>\r
 127 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 128 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 129 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 130 <B>Method Summary</B></FONT></TH>\r
 131 </TR>\r
 132 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 134 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;</CODE></FONT></TD>\r
 135 <TD><CODE><B><A HREF="../../../../compbio/data/msa/jaxws/PresetAnalize.html#getFastaSequences()">getFastaSequences</A></B>()</CODE>\r
 136 \r
 137 <BR>\r
 138 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 139 </TR>\r
 140 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 142 <CODE>&nbsp;<A HREF="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A></CODE></FONT></TD>\r
 143 <TD><CODE><B><A HREF="../../../../compbio/data/msa/jaxws/PresetAnalize.html#getPreset()">getPreset</A></B>()</CODE>\r
 144 \r
 145 <BR>\r
 146 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 147 </TR>\r
 148 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 149 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 150 <CODE>&nbsp;void</CODE></FONT></TD>\r
 151 <TD><CODE><B><A HREF="../../../../compbio/data/msa/jaxws/PresetAnalize.html#setFastaSequences(java.util.List)">setFastaSequences</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;fastaSequences)</CODE>\r
 152 \r
 153 <BR>\r
 154 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 155 </TR>\r
 156 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 157 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 158 <CODE>&nbsp;void</CODE></FONT></TD>\r
 159 <TD><CODE><B><A HREF="../../../../compbio/data/msa/jaxws/PresetAnalize.html#setPreset(compbio.metadata.Preset)">setPreset</A></B>(<A HREF="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A>&nbsp;preset)</CODE>\r
 160 \r
 161 <BR>\r
 162 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 163 </TR>\r
 164 </TABLE>\r
 165 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 166 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 167 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 168 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 169 </TR>\r
 170 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 171 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 172 </TR>\r
 173 </TABLE>\r
 174 &nbsp;\r
 175 <P>\r
 176 \r
 177 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 178 \r
 179 <A NAME="constructor_detail"><!-- --></A>\r
 180 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 181 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 182 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 183 <B>Constructor Detail</B></FONT></TH>\r
 184 </TR>\r
 185 </TABLE>\r
 186 \r
 187 <A NAME="PresetAnalize()"><!-- --></A><H3>\r
 188 PresetAnalize</H3>\r
 189 <PRE>\r
 190 public <B>PresetAnalize</B>()</PRE>\r
 191 <DL>\r
 192 </DL>\r
 193 \r
 194 <!-- ============ METHOD DETAIL ========== -->\r
 195 \r
 196 <A NAME="method_detail"><!-- --></A>\r
 197 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 198 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 199 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 200 <B>Method Detail</B></FONT></TH>\r
 201 </TR>\r
 202 </TABLE>\r
 203 \r
 204 <A NAME="getFastaSequences()"><!-- --></A><H3>\r
 205 getFastaSequences</H3>\r
 206 <PRE>\r
 207 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt; <B>getFastaSequences</B>()</PRE>\r
 208 <DL>\r
 209 <DD><DL>\r
 210 \r
 211 <DT><B>Returns:</B><DD>returns List<FastaSequence></DL>\r
 212 </DD>\r
 213 </DL>\r
 214 <HR>\r
 215 \r
 216 <A NAME="setFastaSequences(java.util.List)"><!-- --></A><H3>\r
 217 setFastaSequences</H3>\r
 218 <PRE>\r
 219 public void <B>setFastaSequences</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;fastaSequences)</PRE>\r
 220 <DL>\r
 221 <DD><DL>\r
 222 <DT><B>Parameters:</B><DD><CODE>fastaSequences</CODE> - the value for the fastaSequences property</DL>\r
 223 </DD>\r
 224 </DL>\r
 225 <HR>\r
 226 \r
 227 <A NAME="getPreset()"><!-- --></A><H3>\r
 228 getPreset</H3>\r
 229 <PRE>\r
 230 public <A HREF="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A> <B>getPreset</B>()</PRE>\r
 231 <DL>\r
 232 <DD><DL>\r
 233 \r
 234 <DT><B>Returns:</B><DD>returns Preset</DL>\r
 235 </DD>\r
 236 </DL>\r
 237 <HR>\r
 238 \r
 239 <A NAME="setPreset(compbio.metadata.Preset)"><!-- --></A><H3>\r
 240 setPreset</H3>\r
 241 <PRE>\r
 242 public void <B>setPreset</B>(<A HREF="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A>&nbsp;preset)</PRE>\r
 243 <DL>\r
 244 <DD><DL>\r
 245 <DT><B>Parameters:</B><DD><CODE>preset</CODE> - the value for the preset property</DL>\r
 246 </DD>\r
 247 </DL>\r
 248 <!-- ========= END OF CLASS DATA ========= -->\r
 249 <HR>\r
 250 \r
 251 \r
 252 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 253 <A NAME="navbar_bottom"><!-- --></A>\r
 254 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 255 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 256 <TR>\r
 257 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 258 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 259 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 260   <TR ALIGN="center" VALIGN="top">\r
 261   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 262   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 263   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
 264   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/PresetAnalize.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 265   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 266   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 267   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 268   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 269   </TR>\r
 270 </TABLE>\r
 271 </TD>\r
 272 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 273 </EM>\r
 274 </TD>\r
 275 </TR>\r
 276 \r
 277 <TR>\r
 278 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 279 &nbsp;<A HREF="../../../../compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws"><B>PREV CLASS</B></A>&nbsp;\r
 280 &nbsp;<A HREF="../../../../compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws"><B>NEXT CLASS</B></A></FONT></TD>\r
 281 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 282   <A HREF="../../../../index.html?compbio/data/msa/jaxws/PresetAnalize.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 283 &nbsp;<A HREF="PresetAnalize.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 284 &nbsp;<SCRIPT type="text/javascript">\r
 285   <!--\r
 286   if(window==top) {\r
 287     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 288   }\r
 289   //-->\r
 290 </SCRIPT>\r
 291 <NOSCRIPT>\r
 292   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 293 </NOSCRIPT>\r
 294 \r
 295 \r
 296 </FONT></TD>\r
 297 </TR>\r
 298 <TR>\r
 299 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 300   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
 301 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 302 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
 303 </TR>\r
 304 </TABLE>\r
 305 <A NAME="skip-navbar_bottom"></A>\r
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