updated javadoc
[jabaws.git] / website / dm_javadoc / compbio / data / msa / package-summary.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:04 BST 2011 -->\r
6 <TITLE>\r
7 compbio.data.msa\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="compbio.data.msa";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Package</B></FONT>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-use.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;PREV PACKAGE&nbsp;\r
59 &nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/data/msa/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="package-summary.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <H2>\r
83 Package compbio.data.msa\r
84 </H2>\r
85 Web Service interfaces for JAva Bioinformatics Analysis Web Services.\r
86 <P>\r
87 <B>See:</B>\r
88 <BR>\r
89 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<A HREF="#package_description"><B>Description</B></A>\r
90 <P>\r
91 \r
92 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
93 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
94 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
95 <B>Interface Summary</B></FONT></TH>\r
96 </TR>\r
97 <TR BGCOLOR="white" CLASS="TableRowColor">\r
98 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></B></TD>\r
99 <TD>This is a marker interface, contains no methods</TD>\r
100 </TR>\r
101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
102 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</A></B></TD>\r
103 <TD>&nbsp;</TD>\r
104 </TR>\r
105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
106 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata&lt;T&gt;</A></B></TD>\r
107 <TD>&nbsp;</TD>\r
108 </TR>\r
109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
110 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS&lt;T&gt;</A></B></TD>\r
111 <TD>Multiple Sequence Alignment (MSA) Web Services Interface</TD>\r
112 </TR>\r
113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
114 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa">RegistryWS</A></B></TD>\r
115 <TD>JABAWS services registry</TD>\r
116 </TR>\r
117 <TR BGCOLOR="white" CLASS="TableRowColor">\r
118 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation&lt;T&gt;</A></B></TD>\r
119 <TD>Interface for tools that results to one or more annotation to sequence(s)
120  
121  Single, multiple sequences their groups or alignments can be annotated</TD>\r
122 </TR>\r
123 </TABLE>\r
124 &nbsp;\r
125 \r
126 <P>\r
127 <A NAME="package_description"><!-- --></A><H2>\r
128 Package compbio.data.msa Description\r
129 </H2>\r
130 \r
131 <P>\r
132 Web Service interfaces for JAva Bioinformatics Analysis Web Services.\r
133 <P>\r
134 \r
135 <P>\r
136 <DL>\r
137 <DT><B>Version:</B></DT>\r
138   <DD>1.0     April 2010</DD>\r
139 <DT><B>Author:</B></DT>\r
140   <DD>Peter Troshin</DD>\r
141 </DL>\r
142 <HR>\r
143 \r
144 \r
145 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
146 <A NAME="navbar_bottom"><!-- --></A>\r
147 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
148 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
149 <TR>\r
150 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
151 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
152 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
153   <TR ALIGN="center" VALIGN="top">\r
154   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
155   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Package</B></FONT>&nbsp;</TD>\r
156   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
157   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-use.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
158   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
159   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
160   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
161   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
162   </TR>\r
163 </TABLE>\r
164 </TD>\r
165 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
166 </EM>\r
167 </TD>\r
168 </TR>\r
169 \r
170 <TR>\r
171 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
172 &nbsp;PREV PACKAGE&nbsp;\r
173 &nbsp;<A HREF="../../../compbio/data/msa/jaxws/package-summary.html"><B>NEXT PACKAGE</B></A></FONT></TD>\r
174 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
175   <A HREF="../../../index.html?compbio/data/msa/package-summary.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
176 &nbsp;<A HREF="package-summary.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
177 &nbsp;<SCRIPT type="text/javascript">\r
178   <!--\r
179   if(window==top) {\r
180     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
181   }\r
182   //-->\r
183 </SCRIPT>\r
184 <NOSCRIPT>\r
185   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
186 </NOSCRIPT>\r
187 \r
188 \r
189 </FONT></TD>\r
190 </TR>\r
191 </TABLE>\r
192 <A NAME="skip-navbar_bottom"></A>\r
193 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
194 \r
195 <HR>\r
196 \r
197 </BODY>\r
198 </HTML>\r