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   7 ConservationMethod\r
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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#enum_constant_summary">ENUM CONSTANTS</A>&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  81 DETAIL:&nbsp;<A HREF="#enum_constant_detail">ENUM CONSTANTS</A>&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Enum ConservationMethod</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
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  97       <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.ConservationMethod</B>\r
  98 </PRE>\r
  99 <DL>\r
 100 <DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://java.sun.com/javase/6/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A>&lt;<A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>&gt;</DD>\r
 101 </DL>\r
 102 <HR>\r
 103 <DL>\r
 104 <DT><PRE>public enum <B>ConservationMethod</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A>&lt;<A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>&gt;</DL>\r
 105 </PRE>\r
 106 \r
 107 <P>\r
 108 Enumeration listing of all the supported methods.\r
 109 <P>\r
 110 \r
 111 <P>\r
 112 <DL>\r
 113 <DT><B>Author:</B></DT>\r
 114   <DD>Agnieszka Golicz & Peter Troshin</DD>\r
 115 </DL>\r
 116 <HR>\r
 117 \r
 118 <P>\r
 119 <!-- =========== ENUM CONSTANT SUMMARY =========== -->\r
 120 \r
 121 <A NAME="enum_constant_summary"><!-- --></A>\r
 122 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 123 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 124 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 125 <B>Enum Constant Summary</B></FONT></TH>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#ARMON">ARMON</A></B></CODE>\r
 129 \r
 130 <BR>\r
 131 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 132 </TR>\r
 133 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 134 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#GERSTEIN">GERSTEIN</A></B></CODE>\r
 135 \r
 136 <BR>\r
 137 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 138 </TR>\r
 139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 140 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#JORES">JORES</A></B></CODE>\r
 141 \r
 142 <BR>\r
 143 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 144 </TR>\r
 145 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 146 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#KABAT">KABAT</A></B></CODE>\r
 147 \r
 148 <BR>\r
 149 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 150 </TR>\r
 151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 152 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#KARLIN">KARLIN</A></B></CODE>\r
 153 \r
 154 <BR>\r
 155 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 156 </TR>\r
 157 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 158 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#LANDGRAF">LANDGRAF</A></B></CODE>\r
 159 \r
 160 <BR>\r
 161 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 162 </TR>\r
 163 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 164 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#MIRNY">MIRNY</A></B></CODE>\r
 165 \r
 166 <BR>\r
 167 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 168 </TR>\r
 169 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 170 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#NOT_LANCET">NOT_LANCET</A></B></CODE>\r
 171 \r
 172 <BR>\r
 173 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 174 </TR>\r
 175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 176 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#SANDER">SANDER</A></B></CODE>\r
 177 \r
 178 <BR>\r
 179 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 180 </TR>\r
 181 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 182 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#SCHNEIDER">SCHNEIDER</A></B></CODE>\r
 183 \r
 184 <BR>\r
 185 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 186 </TR>\r
 187 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 188 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#SHENKIN">SHENKIN</A></B></CODE>\r
 189 \r
 190 <BR>\r
 191 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 192 </TR>\r
 193 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 194 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#SMERFS">SMERFS</A></B></CODE>\r
 195 \r
 196 <BR>\r
 197 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 198 </TR>\r
 199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 200 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_GAPS">TAYLOR_GAPS</A></B></CODE>\r
 201 \r
 202 <BR>\r
 203 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 204 </TR>\r
 205 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 206 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_NO_GAPS">TAYLOR_NO_GAPS</A></B></CODE>\r
 207 \r
 208 <BR>\r
 209 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 210 </TR>\r
 211 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 212 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#THOMPSON">THOMPSON</A></B></CODE>\r
 213 \r
 214 <BR>\r
 215 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 216 </TR>\r
 217 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 218 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#VALDAR">VALDAR</A></B></CODE>\r
 219 \r
 220 <BR>\r
 221 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 222 </TR>\r
 223 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 224 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#WILLIAMSON">WILLIAMSON</A></B></CODE>\r
 225 \r
 226 <BR>\r
 227 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 228 </TR>\r
 229 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 230 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#ZVELIBIL">ZVELIBIL</A></B></CODE>\r
 231 \r
 232 <BR>\r
 233 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 234 </TR>\r
 235 </TABLE>\r
 236 &nbsp;\r
 237 <!-- ========== METHOD SUMMARY =========== -->\r
 238 \r
 239 <A NAME="method_summary"><!-- --></A>\r
 240 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 241 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 242 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 243 <B>Method Summary</B></FONT></TH>\r
 244 </TR>\r
 245 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 246 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 247 <CODE>static&nbsp;<A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A></CODE></FONT></TD>\r
 248 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#getMethod(java.lang.String)">getMethod</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;meth)</CODE>\r
 249 \r
 250 <BR>\r
 251 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 252 </TR>\r
 253 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 254 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 255 <CODE>static&nbsp;<A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A></CODE></FONT></TD>\r
 256 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#valueOf(java.lang.String)">valueOf</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;name)</CODE>\r
 257 \r
 258 <BR>\r
 259 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns the enum constant of this type with the specified name.</TD>\r
 260 </TR>\r
 261 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 262 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 263 <CODE>static&nbsp;<A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>[]</CODE></FONT></TD>\r
 264 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ConservationMethod.html#values()">values</A></B>()</CODE>\r
 265 \r
 266 <BR>\r
 267 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns an array containing the constants of this enum type, in
 268 the order they are declared.</TD>\r
 269 </TR>\r
 270 </TABLE>\r
 271 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Enum"><!-- --></A>\r
 272 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 273 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 274 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A></B></TH>\r
 275 </TR>\r
 276 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 277 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#compareTo(E)" title="class or interface in java.lang">compareTo</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#getDeclaringClass()" title="class or interface in java.lang">getDeclaringClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#name()" title="class or interface in java.lang">name</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#ordinal()" title="class or interface in java.lang">ordinal</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true#valueOf(java.lang.Class, java.lang.String)" title="class or interface in java.lang">valueOf</A></CODE></TD>\r
 278 </TR>\r
 279 </TABLE>\r
 280 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 281 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 282 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 283 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 284 </TR>\r
 285 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 286 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 287 </TR>\r
 288 </TABLE>\r
 289 &nbsp;\r
 290 <P>\r
 291 \r
 292 <!-- ============ ENUM CONSTANT DETAIL =========== -->\r
 293 \r
 294 <A NAME="enum_constant_detail"><!-- --></A>\r
 295 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 296 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 297 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 298 <B>Enum Constant Detail</B></FONT></TH>\r
 299 </TR>\r
 300 </TABLE>\r
 301 \r
 302 <A NAME="KABAT"><!-- --></A><H3>\r
 303 KABAT</H3>\r
 304 <PRE>\r
 305 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>KABAT</B></PRE>\r
 306 <DL>\r
 307 <DL>\r
 308 </DL>\r
 309 </DL>\r
 310 <HR>\r
 311 \r
 312 <A NAME="JORES"><!-- --></A><H3>\r
 313 JORES</H3>\r
 314 <PRE>\r
 315 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>JORES</B></PRE>\r
 316 <DL>\r
 317 <DL>\r
 318 </DL>\r
 319 </DL>\r
 320 <HR>\r
 321 \r
 322 <A NAME="SCHNEIDER"><!-- --></A><H3>\r
 323 SCHNEIDER</H3>\r
 324 <PRE>\r
 325 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>SCHNEIDER</B></PRE>\r
 326 <DL>\r
 327 <DL>\r
 328 </DL>\r
 329 </DL>\r
 330 <HR>\r
 331 \r
 332 <A NAME="SHENKIN"><!-- --></A><H3>\r
 333 SHENKIN</H3>\r
 334 <PRE>\r
 335 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>SHENKIN</B></PRE>\r
 336 <DL>\r
 337 <DL>\r
 338 </DL>\r
 339 </DL>\r
 340 <HR>\r
 341 \r
 342 <A NAME="GERSTEIN"><!-- --></A><H3>\r
 343 GERSTEIN</H3>\r
 344 <PRE>\r
 345 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>GERSTEIN</B></PRE>\r
 346 <DL>\r
 347 <DL>\r
 348 </DL>\r
 349 </DL>\r
 350 <HR>\r
 351 \r
 352 <A NAME="TAYLOR_GAPS"><!-- --></A><H3>\r
 353 TAYLOR_GAPS</H3>\r
 354 <PRE>\r
 355 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>TAYLOR_GAPS</B></PRE>\r
 356 <DL>\r
 357 <DL>\r
 358 </DL>\r
 359 </DL>\r
 360 <HR>\r
 361 \r
 362 <A NAME="TAYLOR_NO_GAPS"><!-- --></A><H3>\r
 363 TAYLOR_NO_GAPS</H3>\r
 364 <PRE>\r
 365 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>TAYLOR_NO_GAPS</B></PRE>\r
 366 <DL>\r
 367 <DL>\r
 368 </DL>\r
 369 </DL>\r
 370 <HR>\r
 371 \r
 372 <A NAME="ZVELIBIL"><!-- --></A><H3>\r
 373 ZVELIBIL</H3>\r
 374 <PRE>\r
 375 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>ZVELIBIL</B></PRE>\r
 376 <DL>\r
 377 <DL>\r
 378 </DL>\r
 379 </DL>\r
 380 <HR>\r
 381 \r
 382 <A NAME="KARLIN"><!-- --></A><H3>\r
 383 KARLIN</H3>\r
 384 <PRE>\r
 385 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>KARLIN</B></PRE>\r
 386 <DL>\r
 387 <DL>\r
 388 </DL>\r
 389 </DL>\r
 390 <HR>\r
 391 \r
 392 <A NAME="ARMON"><!-- --></A><H3>\r
 393 ARMON</H3>\r
 394 <PRE>\r
 395 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>ARMON</B></PRE>\r
 396 <DL>\r
 397 <DL>\r
 398 </DL>\r
 399 </DL>\r
 400 <HR>\r
 401 \r
 402 <A NAME="THOMPSON"><!-- --></A><H3>\r
 403 THOMPSON</H3>\r
 404 <PRE>\r
 405 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>THOMPSON</B></PRE>\r
 406 <DL>\r
 407 <DL>\r
 408 </DL>\r
 409 </DL>\r
 410 <HR>\r
 411 \r
 412 <A NAME="NOT_LANCET"><!-- --></A><H3>\r
 413 NOT_LANCET</H3>\r
 414 <PRE>\r
 415 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>NOT_LANCET</B></PRE>\r
 416 <DL>\r
 417 <DL>\r
 418 </DL>\r
 419 </DL>\r
 420 <HR>\r
 421 \r
 422 <A NAME="MIRNY"><!-- --></A><H3>\r
 423 MIRNY</H3>\r
 424 <PRE>\r
 425 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>MIRNY</B></PRE>\r
 426 <DL>\r
 427 <DL>\r
 428 </DL>\r
 429 </DL>\r
 430 <HR>\r
 431 \r
 432 <A NAME="WILLIAMSON"><!-- --></A><H3>\r
 433 WILLIAMSON</H3>\r
 434 <PRE>\r
 435 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>WILLIAMSON</B></PRE>\r
 436 <DL>\r
 437 <DL>\r
 438 </DL>\r
 439 </DL>\r
 440 <HR>\r
 441 \r
 442 <A NAME="LANDGRAF"><!-- --></A><H3>\r
 443 LANDGRAF</H3>\r
 444 <PRE>\r
 445 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>LANDGRAF</B></PRE>\r
 446 <DL>\r
 447 <DL>\r
 448 </DL>\r
 449 </DL>\r
 450 <HR>\r
 451 \r
 452 <A NAME="SANDER"><!-- --></A><H3>\r
 453 SANDER</H3>\r
 454 <PRE>\r
 455 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>SANDER</B></PRE>\r
 456 <DL>\r
 457 <DL>\r
 458 </DL>\r
 459 </DL>\r
 460 <HR>\r
 461 \r
 462 <A NAME="VALDAR"><!-- --></A><H3>\r
 463 VALDAR</H3>\r
 464 <PRE>\r
 465 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>VALDAR</B></PRE>\r
 466 <DL>\r
 467 <DL>\r
 468 </DL>\r
 469 </DL>\r
 470 <HR>\r
 471 \r
 472 <A NAME="SMERFS"><!-- --></A><H3>\r
 473 SMERFS</H3>\r
 474 <PRE>\r
 475 public static final <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>SMERFS</B></PRE>\r
 476 <DL>\r
 477 <DL>\r
 478 </DL>\r
 479 </DL>\r
 480 \r
 481 <!-- ============ METHOD DETAIL ========== -->\r
 482 \r
 483 <A NAME="method_detail"><!-- --></A>\r
 484 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 485 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 486 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 487 <B>Method Detail</B></FONT></TH>\r
 488 </TR>\r
 489 </TABLE>\r
 490 \r
 491 <A NAME="values()"><!-- --></A><H3>\r
 492 values</H3>\r
 493 <PRE>\r
 494 public static <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>[] <B>values</B>()</PRE>\r
 495 <DL>\r
 496 <DD>Returns an array containing the constants of this enum type, in
 497 the order they are declared.  This method may be used to iterate
 498 over the constants as follows:
 499 <pre>
 500 for (ConservationMethod c : ConservationMethod.values())
 501 &nbsp;   System.out.println(c);
 502 </pre>\r
 503 <P>\r
 504 <DD><DL>\r
 505 \r
 506 <DT><B>Returns:</B><DD>an array containing the constants of this enum type, in
 507 the order they are declared</DL>\r
 508 </DD>\r
 509 </DL>\r
 510 <HR>\r
 511 \r
 512 <A NAME="valueOf(java.lang.String)"><!-- --></A><H3>\r
 513 valueOf</H3>\r
 514 <PRE>\r
 515 public static <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>valueOf</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;name)</PRE>\r
 516 <DL>\r
 517 <DD>Returns the enum constant of this type with the specified name.
 518 The string must match <I>exactly</I> an identifier used to declare an
 519 enum constant in this type.  (Extraneous whitespace characters are
 520 not permitted.)\r
 521 <P>\r
 522 <DD><DL>\r
 523 <DT><B>Parameters:</B><DD><CODE>name</CODE> - the name of the enum constant to be returned.\r
 524 <DT><B>Returns:</B><DD>the enum constant with the specified name\r
 525 <DT><B>Throws:</B>\r
 526 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/IllegalArgumentException.html?is-external=true" title="class or interface in java.lang">IllegalArgumentException</A></CODE> - if this enum type has no constant
 527 with the specified name\r
 528 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/NullPointerException.html?is-external=true" title="class or interface in java.lang">NullPointerException</A></CODE> - if the argument is null</DL>\r
 529 </DD>\r
 530 </DL>\r
 531 <HR>\r
 532 \r
 533 <A NAME="getMethod(java.lang.String)"><!-- --></A><H3>\r
 534 getMethod</H3>\r
 535 <PRE>\r
 536 public static <A HREF="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A> <B>getMethod</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;meth)</PRE>\r
 537 <DL>\r
 538 <DD><DL>\r
 539 </DL>\r
 540 </DD>\r
 541 </DL>\r
 542 <!-- ========= END OF CLASS DATA ========= -->\r
 543 <HR>\r
 544 \r
 545 \r
 546 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 547 <A NAME="navbar_bottom"><!-- --></A>\r
 548 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 549 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 550 <TR>\r
 551 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 552 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 553 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 554   <TR ALIGN="center" VALIGN="top">\r
 555   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 556   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 557   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
 558   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/ConservationMethod.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 559   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
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 563   </TR>\r
 564 </TABLE>\r
 565 </TD>\r
 566 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 567 </EM>\r
 568 </TD>\r
 569 </TR>\r
 570 \r
 571 <TR>\r
 572 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 573 &nbsp;<A HREF="../../../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;\r
 574 &nbsp;<A HREF="../../../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence"><B>NEXT CLASS</B></A></FONT></TD>\r
 575 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 576   <A HREF="../../../index.html?compbio/data/sequence/ConservationMethod.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 577 &nbsp;<A HREF="ConservationMethod.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 578 &nbsp;<SCRIPT type="text/javascript">\r
 579   <!--\r
 580   if(window==top) {\r
 581     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 582   }\r
 583   //-->\r
 584 </SCRIPT>\r
 585 <NOSCRIPT>\r
 586   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
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 590 </FONT></TD>\r
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 592 <TR>\r
 593 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 594   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#enum_constant_summary">ENUM CONSTANTS</A>&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
 595 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 596 DETAIL:&nbsp;<A HREF="#enum_constant_detail">ENUM CONSTANTS</A>&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
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