website/dm_javadoc/compbio/data/sequence/ScoreManager.ScoreHolder.html

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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  89 <H2>\r
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  91 compbio.data.sequence</FONT>\r
  92 <BR>\r
  93 Class ScoreManager.ScoreHolder</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.ScoreManager.ScoreHolder</B>\r
  97 </PRE>\r
  98 <DL>\r
  99 <DT><B>Enclosing class:</B><DD><A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></DD>\r
 100 </DL>\r
 101 <HR>\r
 102 <DL>\r
 103 <DT><PRE>public static class <B>ScoreManager.ScoreHolder</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 104 </PRE>\r
 105 \r
 106 <P>\r
 107 <HR>\r
 108 \r
 109 <P>\r
 110 <!-- =========== FIELD SUMMARY =========== -->\r
 111 \r
 112 <A NAME="field_summary"><!-- --></A>\r
 113 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 114 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 115 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 116 <B>Field Summary</B></FONT></TH>\r
 117 </TR>\r
 118 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 119 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 120 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 121 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#id">id</A></B></CODE>\r
 122 \r
 123 <BR>\r
 124 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 125 </TR>\r
 126 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 127 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 128 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/TreeSet.html?is-external=true" title="class or interface in java.util">TreeSet</A>&lt;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>&gt;</CODE></FONT></TD>\r
 129 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#scores">scores</A></B></CODE>\r
 130 \r
 131 <BR>\r
 132 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 133 </TR>\r
 134 </TABLE>\r
 135 &nbsp;\r
 136 <!-- ========== METHOD SUMMARY =========== -->\r
 137 \r
 138 <A NAME="method_summary"><!-- --></A>\r
 139 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 140 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 141 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 142 <B>Method Summary</B></FONT></TH>\r
 143 </TR>\r
 144 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 145 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 146 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 147 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 148 \r
 149 <BR>\r
 150 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 151 </TR>\r
 152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 153 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 154 <CODE>&nbsp;int</CODE></FONT></TD>\r
 155 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getNumberOfScores()">getNumberOfScores</A></B>()</CODE>\r
 156 \r
 157 <BR>\r
 158 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 159 </TR>\r
 160 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 161 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 162 <CODE>&nbsp;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A></CODE></FONT></TD>\r
 163 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod(java.lang.Enum)">getScoreByMethod</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A>&lt;?&gt;&nbsp;method)</CODE>\r
 164 \r
 165 <BR>\r
 166 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 167 </TR>\r
 168 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 169 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 170 <CODE>&nbsp;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A></CODE></FONT></TD>\r
 171 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#getScoreByMethod(java.lang.String)">getScoreByMethod</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;method)</CODE>\r
 172 \r
 173 <BR>\r
 174 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 175 </TR>\r
 176 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 177 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 178 <CODE>&nbsp;int</CODE></FONT></TD>\r
 179 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode()">hashCode</A></B>()</CODE>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 183 </TR>\r
 184 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 185 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 186 <CODE>&nbsp;void</CODE></FONT></TD>\r
 187 <TD><CODE><B><A HREF="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html#writeOut(java.io.Writer)">writeOut</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/Writer.html?is-external=true" title="class or interface in java.io">Writer</A>&nbsp;writer)</CODE>\r
 188 \r
 189 <BR>\r
 190 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 191 </TR>\r
 192 </TABLE>\r
 193 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 194 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 195 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 196 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 197 </TR>\r
 198 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 199 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 200 </TR>\r
 201 </TABLE>\r
 202 &nbsp;\r
 203 <P>\r
 204 \r
 205 <!-- ============ FIELD DETAIL =========== -->\r
 206 \r
 207 <A NAME="field_detail"><!-- --></A>\r
 208 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 209 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 210 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 211 <B>Field Detail</B></FONT></TH>\r
 212 </TR>\r
 213 </TABLE>\r
 214 \r
 215 <A NAME="id"><!-- --></A><H3>\r
 216 id</H3>\r
 217 <PRE>\r
 218 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>id</B></PRE>\r
 219 <DL>\r
 220 <DL>\r
 221 </DL>\r
 222 </DL>\r
 223 <HR>\r
 224 \r
 225 <A NAME="scores"><!-- --></A><H3>\r
 226 scores</H3>\r
 227 <PRE>\r
 228 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/TreeSet.html?is-external=true" title="class or interface in java.util">TreeSet</A>&lt;<A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>&gt; <B>scores</B></PRE>\r
 229 <DL>\r
 230 <DL>\r
 231 </DL>\r
 232 </DL>\r
 233 \r
 234 <!-- ============ METHOD DETAIL ========== -->\r
 235 \r
 236 <A NAME="method_detail"><!-- --></A>\r
 237 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 238 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 239 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 240 <B>Method Detail</B></FONT></TH>\r
 241 </TR>\r
 242 </TABLE>\r
 243 \r
 244 <A NAME="writeOut(java.io.Writer)"><!-- --></A><H3>\r
 245 writeOut</H3>\r
 246 <PRE>\r
 247 public void <B>writeOut</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/Writer.html?is-external=true" title="class or interface in java.io">Writer</A>&nbsp;writer)\r
 248               throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 249 <DL>\r
 250 <DD><DL>\r
 251 \r
 252 <DT><B>Throws:</B>\r
 253 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
 254 </DD>\r
 255 </DL>\r
 256 <HR>\r
 257 \r
 258 <A NAME="getScoreByMethod(java.lang.Enum)"><!-- --></A><H3>\r
 259 getScoreByMethod</H3>\r
 260 <PRE>\r
 261 public <A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A> <B>getScoreByMethod</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A>&lt;?&gt;&nbsp;method)</PRE>\r
 262 <DL>\r
 263 <DD><DL>\r
 264 </DL>\r
 265 </DD>\r
 266 </DL>\r
 267 <HR>\r
 268 \r
 269 <A NAME="getScoreByMethod(java.lang.String)"><!-- --></A><H3>\r
 270 getScoreByMethod</H3>\r
 271 <PRE>\r
 272 public <A HREF="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A> <B>getScoreByMethod</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;method)</PRE>\r
 273 <DL>\r
 274 <DD><DL>\r
 275 </DL>\r
 276 </DD>\r
 277 </DL>\r
 278 <HR>\r
 279 \r
 280 <A NAME="getNumberOfScores()"><!-- --></A><H3>\r
 281 getNumberOfScores</H3>\r
 282 <PRE>\r
 283 public int <B>getNumberOfScores</B>()</PRE>\r
 284 <DL>\r
 285 <DD><DL>\r
 286 </DL>\r
 287 </DD>\r
 288 </DL>\r
 289 <HR>\r
 290 \r
 291 <A NAME="hashCode()"><!-- --></A><H3>\r
 292 hashCode</H3>\r
 293 <PRE>\r
 294 public int <B>hashCode</B>()</PRE>\r
 295 <DL>\r
 296 <DD><DL>\r
 297 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 298 </DD>\r
 299 <DD><DL>\r
 300 </DL>\r
 301 </DD>\r
 302 </DL>\r
 303 <HR>\r
 304 \r
 305 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 306 equals</H3>\r
 307 <PRE>\r
 308 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 309 <DL>\r
 310 <DD><DL>\r
 311 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 312 </DD>\r
 313 <DD><DL>\r
 314 </DL>\r
 315 </DD>\r
 316 </DL>\r
 317 <!-- ========= END OF CLASS DATA ========= -->\r
 318 <HR>\r
 319 \r
 320 \r
 321 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 322 <A NAME="navbar_bottom"><!-- --></A>\r
 323 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
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 327 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 328 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 329   <TR ALIGN="center" VALIGN="top">\r
 330   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
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 333   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/ScoreManager.ScoreHolder.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 334   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
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 338   </TR>\r
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 341 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
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