website/dm_javadoc/compbio/metadata/ChunkHolder.html

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   7 ChunkHolder\r
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   9 \r
  10 <META NAME="date" CONTENT="2010-11-24">\r
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  15 function windowTitle()\r
  16 {\r
  17     if (location.href.indexOf('is-external=true') == -1) {\r
  18         parent.document.title="ChunkHolder";\r
  19     }\r
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  89 <H2>\r
  90 <FONT SIZE="-1">\r
  91 compbio.metadata</FONT>\r
  92 <BR>\r
  93 Class ChunkHolder</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.metadata.ChunkHolder</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public class <B>ChunkHolder</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 Represents a chunk of a string data together with the position in a file for
 105  the next read operation.\r
 106 <P>\r
 107 \r
 108 <P>\r
 109 <DL>\r
 110 <DT><B>Version:</B></DT>\r
 111   <DD>1.0 December 2009</DD>\r
 112 <DT><B>Author:</B></DT>\r
 113   <DD>pvtroshin</DD>\r
 114 </DL>\r
 115 <HR>\r
 116 \r
 117 <P>\r
 118 \r
 119 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 120 \r
 121 <A NAME="constructor_summary"><!-- --></A>\r
 122 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 123 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 124 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 125 <B>Constructor Summary</B></FONT></TH>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#ChunkHolder(java.lang.String, long)">ChunkHolder</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;chunk,\r
 129             long&nbsp;position)</CODE>\r
 130 \r
 131 <BR>\r
 132 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 133 </TR>\r
 134 </TABLE>\r
 135 &nbsp;\r
 136 <!-- ========== METHOD SUMMARY =========== -->\r
 137 \r
 138 <A NAME="method_summary"><!-- --></A>\r
 139 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 140 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 141 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 142 <B>Method Summary</B></FONT></TH>\r
 143 </TR>\r
 144 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 145 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 146 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 147 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 148 \r
 149 <BR>\r
 150 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 151 </TR>\r
 152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 153 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 154 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 155 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#getChunk()">getChunk</A></B>()</CODE>\r
 156 \r
 157 <BR>\r
 158 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 159 </TR>\r
 160 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 161 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 162 <CODE>&nbsp;long</CODE></FONT></TD>\r
 163 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#getNextPosition()">getNextPosition</A></B>()</CODE>\r
 164 \r
 165 <BR>\r
 166 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 167 </TR>\r
 168 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 169 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 170 <CODE>&nbsp;int</CODE></FONT></TD>\r
 171 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#hashCode()">hashCode</A></B>()</CODE>\r
 172 \r
 173 <BR>\r
 174 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 175 </TR>\r
 176 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 177 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 178 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 179 <TD><CODE><B><A HREF="../../compbio/metadata/ChunkHolder.html#toString()">toString</A></B>()</CODE>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 183 </TR>\r
 184 </TABLE>\r
 185 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 186 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 187 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 188 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 189 </TR>\r
 190 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 191 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#clone()" title="class or interface in java.lang">clone</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 192 </TR>\r
 193 </TABLE>\r
 194 &nbsp;\r
 195 <P>\r
 196 \r
 197 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 198 \r
 199 <A NAME="constructor_detail"><!-- --></A>\r
 200 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 201 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 202 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 203 <B>Constructor Detail</B></FONT></TH>\r
 204 </TR>\r
 205 </TABLE>\r
 206 \r
 207 <A NAME="ChunkHolder(java.lang.String, long)"><!-- --></A><H3>\r
 208 ChunkHolder</H3>\r
 209 <PRE>\r
 210 public <B>ChunkHolder</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;chunk,\r
 211                    long&nbsp;position)</PRE>\r
 212 <DL>\r
 213 </DL>\r
 214 \r
 215 <!-- ============ METHOD DETAIL ========== -->\r
 216 \r
 217 <A NAME="method_detail"><!-- --></A>\r
 218 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 219 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 220 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 221 <B>Method Detail</B></FONT></TH>\r
 222 </TR>\r
 223 </TABLE>\r
 224 \r
 225 <A NAME="getChunk()"><!-- --></A><H3>\r
 226 getChunk</H3>\r
 227 <PRE>\r
 228 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getChunk</B>()</PRE>\r
 229 <DL>\r
 230 <DD><DL>\r
 231 </DL>\r
 232 </DD>\r
 233 </DL>\r
 234 <HR>\r
 235 \r
 236 <A NAME="getNextPosition()"><!-- --></A><H3>\r
 237 getNextPosition</H3>\r
 238 <PRE>\r
 239 public long <B>getNextPosition</B>()</PRE>\r
 240 <DL>\r
 241 <DD><DL>\r
 242 </DL>\r
 243 </DD>\r
 244 </DL>\r
 245 <HR>\r
 246 \r
 247 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 248 equals</H3>\r
 249 <PRE>\r
 250 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 251 <DL>\r
 252 <DD><DL>\r
 253 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 254 </DD>\r
 255 <DD><DL>\r
 256 </DL>\r
 257 </DD>\r
 258 </DL>\r
 259 <HR>\r
 260 \r
 261 <A NAME="toString()"><!-- --></A><H3>\r
 262 toString</H3>\r
 263 <PRE>\r
 264 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
 265 <DL>\r
 266 <DD><DL>\r
 267 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 268 </DD>\r
 269 <DD><DL>\r
 270 </DL>\r
 271 </DD>\r
 272 </DL>\r
 273 <HR>\r
 274 \r
 275 <A NAME="hashCode()"><!-- --></A><H3>\r
 276 hashCode</H3>\r
 277 <PRE>\r
 278 public int <B>hashCode</B>()</PRE>\r
 279 <DL>\r
 280 <DD><DL>\r
 281 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 282 </DD>\r
 283 <DD><DL>\r
 284 </DL>\r
 285 </DD>\r
 286 </DL>\r
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 300   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 301   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 302   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
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