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   7 Constant Field Values\r
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  84 Constant Field Values</H1>\r
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  87 <B>Contents</B><UL>\r
  88 <LI><A HREF="#compbio.data">compbio.data.*</A>\r
  89 <LI><A HREF="#compbio.metadata">compbio.metadata.*</A>\r
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  91 \r
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  96 compbio.data.*</FONT></TH>\r
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  99 \r
 100 <P>\r
 101 \r
 102 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 103 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 104 <TH ALIGN="left" COLSPAN="3">compbio.data.msa.<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></TH>\r
 105 </TR>\r
 106 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 107 <A NAME="compbio.data.msa.JABAService.SERVICE_NAMESPACE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 108 <CODE>public&nbsp;static&nbsp;final&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 109 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/JABAService.html#SERVICE_NAMESPACE">SERVICE_NAMESPACE</A></CODE></TD>\r
 110 <TD ALIGN="right"><CODE>"http://msa.data.compbio/01/01/2010/"</CODE></TD>\r
 111 </TR>\r
 112 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 113 <A NAME="compbio.data.msa.JABAService.V2_SERVICE_NAMESPACE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 114 <CODE>public&nbsp;static&nbsp;final&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 115 <TD ALIGN="left"><CODE><A HREF="compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE">V2_SERVICE_NAMESPACE</A></CODE></TD>\r
 116 <TD ALIGN="right"><CODE>"http://msa.data.compbio/01/12/2010/"</CODE></TD>\r
 117 </TR>\r
 118 </FONT></TD>\r
 119 </TR>\r
 120 </TABLE>\r
 121 \r
 122 <P>\r
 123 \r
 124 <P>\r
 125 \r
 126 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 127 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 128 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A></TH>\r
 129 </TR>\r
 130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 131 <A NAME="compbio.data.sequence.ClustalAlignmentUtil.gapchar"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 132 <CODE>public&nbsp;static&nbsp;final&nbsp;char</CODE></FONT></TD>\r
 133 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/ClustalAlignmentUtil.html#gapchar">gapchar</A></CODE></TD>\r
 134 <TD ALIGN="right"><CODE>45</CODE></TD>\r
 135 </TR>\r
 136 </FONT></TD>\r
 137 </TR>\r
 138 </TABLE>\r
 139 \r
 140 <P>\r
 141 \r
 142 <P>\r
 143 \r
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 145 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 146 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></TH>\r
 147 </TR>\r
 148 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 149 <A NAME="compbio.data.sequence.ScoreManager.SINGLE_ENTRY_KEY"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 150 <CODE>public&nbsp;static&nbsp;final&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 151 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/ScoreManager.html#SINGLE_ENTRY_KEY">SINGLE_ENTRY_KEY</A></CODE></TD>\r
 152 <TD ALIGN="right"><CODE>"Alignment"</CODE></TD>\r
 153 </TR>\r
 154 </FONT></TD>\r
 155 </TR>\r
 156 </TABLE>\r
 157 \r
 158 <P>\r
 159 \r
 160 <P>\r
 161 \r
 162 <TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 163 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 164 <TH ALIGN="left" COLSPAN="3">compbio.data.sequence.<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A></TH>\r
 165 </TR>\r
 166 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 167 <A NAME="compbio.data.sequence.SMERFSConstraints.DEFAULT_GAP_THRESHOLD"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 168 <CODE>public&nbsp;static&nbsp;final&nbsp;double</CODE></FONT></TD>\r
 169 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/SMERFSConstraints.html#DEFAULT_GAP_THRESHOLD">DEFAULT_GAP_THRESHOLD</A></CODE></TD>\r
 170 <TD ALIGN="right"><CODE>0.1</CODE></TD>\r
 171 </TR>\r
 172 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 173 <A NAME="compbio.data.sequence.SMERFSConstraints.DEFAULT_WINDOW_SIZE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 174 <CODE>public&nbsp;static&nbsp;final&nbsp;int</CODE></FONT></TD>\r
 175 <TD ALIGN="left"><CODE><A HREF="compbio/data/sequence/SMERFSConstraints.html#DEFAULT_WINDOW_SIZE">DEFAULT_WINDOW_SIZE</A></CODE></TD>\r
 176 <TD ALIGN="right"><CODE>7</CODE></TD>\r
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 192 \r
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 194 \r
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 196 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 197 <TH ALIGN="left" COLSPAN="3">compbio.metadata.<A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="compbio/metadata/PresetManager.html" title="type parameter in PresetManager">T</A>&gt;</TH>\r
 198 </TR>\r
 199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 200 <A NAME="compbio.metadata.PresetManager.LOCAL_ENGINE_LIMIT_PRESET"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">\r
 201 <CODE>public&nbsp;static&nbsp;final&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 202 <TD ALIGN="left"><CODE><A HREF="compbio/metadata/PresetManager.html#LOCAL_ENGINE_LIMIT_PRESET">LOCAL_ENGINE_LIMIT_PRESET</A></CODE></TD>\r
 203 <TD ALIGN="right"><CODE>"# LocalEngineExecutionLimit #"</CODE></TD>\r
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