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  76 <li>Summary:&nbsp;</li>
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  94 <div class="header">
  95 <div class="subTitle">compbio.data.sequence</div>
  96 <h2 title="Enum ConservationMethod" class="title">Enum ConservationMethod</h2>
  97 </div>
  98 <div class="contentContainer">
  99 <ul class="inheritance">
 100 <li>java.lang.Object</li>
 101 <li>
 102 <ul class="inheritance">
 103 <li>java.lang.Enum&lt;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>&gt;</li>
 104 <li>
 105 <ul class="inheritance">
 106 <li>compbio.data.sequence.ConservationMethod</li>
 107 </ul>
 108 </li>
 109 </ul>
 110 </li>
 111 </ul>
 112 <div class="description">
 113 <ul class="blockList">
 114 <li class="blockList">
 115 <dl>
 116 <dt>All Implemented Interfaces:</dt>
 117 <dd>java.io.Serializable, java.lang.Comparable&lt;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>&gt;</dd>
 118 </dl>
 119 <hr>
 120 <br>
 121 <pre>public enum <span class="typeNameLabel">ConservationMethod</span>
 122 extends java.lang.Enum&lt;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>&gt;</pre>
 123 <div class="block">Enumeration listing of all the supported methods.</div>
 124 <dl>
 125 <dt><span class="simpleTagLabel">Author:</span></dt>
 126 <dd>Agnieszka Golicz & Peter Troshin</dd>
 127 </dl>
 128 </li>
 129 </ul>
 130 </div>
 131 <div class="summary">
 132 <ul class="blockList">
 133 <li class="blockList">
 134 <!-- =========== ENUM CONSTANT SUMMARY =========== -->
 135 <ul class="blockList">
 136 <li class="blockList"><a name="enum.constant.summary">
 137 <!--   -->
 138 </a>
 139 <h3>Enum Constant Summary</h3>
 140 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
 141 <caption><span>Enum Constants</span><span class="tabEnd">&nbsp;</span></caption>
 142 <tr>
 143 <th class="colOne" scope="col">Enum Constant and Description</th>
 144 </tr>
 145 <tr class="altColor">
 146 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#ARMON">ARMON</a></span></code>&nbsp;</td>
 147 </tr>
 148 <tr class="rowColor">
 149 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#GERSTEIN">GERSTEIN</a></span></code>&nbsp;</td>
 150 </tr>
 151 <tr class="altColor">
 152 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#JORES">JORES</a></span></code>&nbsp;</td>
 153 </tr>
 154 <tr class="rowColor">
 155 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#KABAT">KABAT</a></span></code>&nbsp;</td>
 156 </tr>
 157 <tr class="altColor">
 158 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#KARLIN">KARLIN</a></span></code>&nbsp;</td>
 159 </tr>
 160 <tr class="rowColor">
 161 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#LANDGRAF">LANDGRAF</a></span></code>&nbsp;</td>
 162 </tr>
 163 <tr class="altColor">
 164 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#MIRNY">MIRNY</a></span></code>&nbsp;</td>
 165 </tr>
 166 <tr class="rowColor">
 167 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#NOT_LANCET">NOT_LANCET</a></span></code>&nbsp;</td>
 168 </tr>
 169 <tr class="altColor">
 170 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SANDER">SANDER</a></span></code>&nbsp;</td>
 171 </tr>
 172 <tr class="rowColor">
 173 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SCHNEIDER">SCHNEIDER</a></span></code>&nbsp;</td>
 174 </tr>
 175 <tr class="altColor">
 176 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SHENKIN">SHENKIN</a></span></code>&nbsp;</td>
 177 </tr>
 178 <tr class="rowColor">
 179 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#SMERFS">SMERFS</a></span></code>&nbsp;</td>
 180 </tr>
 181 <tr class="altColor">
 182 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_GAPS">TAYLOR_GAPS</a></span></code>&nbsp;</td>
 183 </tr>
 184 <tr class="rowColor">
 185 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#TAYLOR_NO_GAPS">TAYLOR_NO_GAPS</a></span></code>&nbsp;</td>
 186 </tr>
 187 <tr class="altColor">
 188 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#THOMPSON">THOMPSON</a></span></code>&nbsp;</td>
 189 </tr>
 190 <tr class="rowColor">
 191 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#VALDAR">VALDAR</a></span></code>&nbsp;</td>
 192 </tr>
 193 <tr class="altColor">
 194 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#WILLIAMSON">WILLIAMSON</a></span></code>&nbsp;</td>
 195 </tr>
 196 <tr class="rowColor">
 197 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#ZVELIBIL">ZVELIBIL</a></span></code>&nbsp;</td>
 198 </tr>
 199 </table>
 200 </li>
 201 </ul>
 202 <!-- ========== METHOD SUMMARY =========== -->
 203 <ul class="blockList">
 204 <li class="blockList"><a name="method.summary">
 205 <!--   -->
 206 </a>
 207 <h3>Method Summary</h3>
 208 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
 209 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
 210 <tr>
 211 <th class="colFirst" scope="col">Modifier and Type</th>
 212 <th class="colLast" scope="col">Method and Description</th>
 213 </tr>
 214 <tr id="i0" class="altColor">
 215 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></code></td>
 216 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#getMethod-java.lang.String-">getMethod</a></span>(java.lang.String&nbsp;meth)</code>&nbsp;</td>
 217 </tr>
 218 <tr id="i1" class="rowColor">
 219 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></code></td>
 220 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String&nbsp;name)</code>
 221 <div class="block">Returns the enum constant of this type with the specified name.</div>
 222 </td>
 223 </tr>
 224 <tr id="i2" class="altColor">
 225 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>[]</code></td>
 226 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/ConservationMethod.html#values--">values</a></span>()</code>
 227 <div class="block">Returns an array containing the constants of this enum type, in
 228 the order they are declared.</div>
 229 </td>
 230 </tr>
 231 </table>
 232 <ul class="blockList">
 233 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Enum">
 234 <!--   -->
 235 </a>
 236 <h3>Methods inherited from class&nbsp;java.lang.Enum</h3>
 237 <code>clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf</code></li>
 238 </ul>
 239 <ul class="blockList">
 240 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
 241 <!--   -->
 242 </a>
 243 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 244 <code>getClass, notify, notifyAll, wait, wait, wait</code></li>
 245 </ul>
 246 </li>
 247 </ul>
 248 </li>
 249 </ul>
 250 </div>
 251 <div class="details">
 252 <ul class="blockList">
 253 <li class="blockList">
 254 <!-- ============ ENUM CONSTANT DETAIL =========== -->
 255 <ul class="blockList">
 256 <li class="blockList"><a name="enum.constant.detail">
 257 <!--   -->
 258 </a>
 259 <h3>Enum Constant Detail</h3>
 260 <a name="KABAT">
 261 <!--   -->
 262 </a>
 263 <ul class="blockList">
 264 <li class="blockList">
 265 <h4>KABAT</h4>
 266 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> KABAT</pre>
 267 </li>
 268 </ul>
 269 <a name="JORES">
 270 <!--   -->
 271 </a>
 272 <ul class="blockList">
 273 <li class="blockList">
 274 <h4>JORES</h4>
 275 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> JORES</pre>
 276 </li>
 277 </ul>
 278 <a name="SCHNEIDER">
 279 <!--   -->
 280 </a>
 281 <ul class="blockList">
 282 <li class="blockList">
 283 <h4>SCHNEIDER</h4>
 284 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SCHNEIDER</pre>
 285 </li>
 286 </ul>
 287 <a name="SHENKIN">
 288 <!--   -->
 289 </a>
 290 <ul class="blockList">
 291 <li class="blockList">
 292 <h4>SHENKIN</h4>
 293 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SHENKIN</pre>
 294 </li>
 295 </ul>
 296 <a name="GERSTEIN">
 297 <!--   -->
 298 </a>
 299 <ul class="blockList">
 300 <li class="blockList">
 301 <h4>GERSTEIN</h4>
 302 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> GERSTEIN</pre>
 303 </li>
 304 </ul>
 305 <a name="TAYLOR_GAPS">
 306 <!--   -->
 307 </a>
 308 <ul class="blockList">
 309 <li class="blockList">
 310 <h4>TAYLOR_GAPS</h4>
 311 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> TAYLOR_GAPS</pre>
 312 </li>
 313 </ul>
 314 <a name="TAYLOR_NO_GAPS">
 315 <!--   -->
 316 </a>
 317 <ul class="blockList">
 318 <li class="blockList">
 319 <h4>TAYLOR_NO_GAPS</h4>
 320 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> TAYLOR_NO_GAPS</pre>
 321 </li>
 322 </ul>
 323 <a name="ZVELIBIL">
 324 <!--   -->
 325 </a>
 326 <ul class="blockList">
 327 <li class="blockList">
 328 <h4>ZVELIBIL</h4>
 329 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> ZVELIBIL</pre>
 330 </li>
 331 </ul>
 332 <a name="KARLIN">
 333 <!--   -->
 334 </a>
 335 <ul class="blockList">
 336 <li class="blockList">
 337 <h4>KARLIN</h4>
 338 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> KARLIN</pre>
 339 </li>
 340 </ul>
 341 <a name="ARMON">
 342 <!--   -->
 343 </a>
 344 <ul class="blockList">
 345 <li class="blockList">
 346 <h4>ARMON</h4>
 347 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> ARMON</pre>
 348 </li>
 349 </ul>
 350 <a name="THOMPSON">
 351 <!--   -->
 352 </a>
 353 <ul class="blockList">
 354 <li class="blockList">
 355 <h4>THOMPSON</h4>
 356 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> THOMPSON</pre>
 357 </li>
 358 </ul>
 359 <a name="NOT_LANCET">
 360 <!--   -->
 361 </a>
 362 <ul class="blockList">
 363 <li class="blockList">
 364 <h4>NOT_LANCET</h4>
 365 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> NOT_LANCET</pre>
 366 </li>
 367 </ul>
 368 <a name="MIRNY">
 369 <!--   -->
 370 </a>
 371 <ul class="blockList">
 372 <li class="blockList">
 373 <h4>MIRNY</h4>
 374 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> MIRNY</pre>
 375 </li>
 376 </ul>
 377 <a name="WILLIAMSON">
 378 <!--   -->
 379 </a>
 380 <ul class="blockList">
 381 <li class="blockList">
 382 <h4>WILLIAMSON</h4>
 383 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> WILLIAMSON</pre>
 384 </li>
 385 </ul>
 386 <a name="LANDGRAF">
 387 <!--   -->
 388 </a>
 389 <ul class="blockList">
 390 <li class="blockList">
 391 <h4>LANDGRAF</h4>
 392 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> LANDGRAF</pre>
 393 </li>
 394 </ul>
 395 <a name="SANDER">
 396 <!--   -->
 397 </a>
 398 <ul class="blockList">
 399 <li class="blockList">
 400 <h4>SANDER</h4>
 401 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SANDER</pre>
 402 </li>
 403 </ul>
 404 <a name="VALDAR">
 405 <!--   -->
 406 </a>
 407 <ul class="blockList">
 408 <li class="blockList">
 409 <h4>VALDAR</h4>
 410 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> VALDAR</pre>
 411 </li>
 412 </ul>
 413 <a name="SMERFS">
 414 <!--   -->
 415 </a>
 416 <ul class="blockListLast">
 417 <li class="blockList">
 418 <h4>SMERFS</h4>
 419 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a> SMERFS</pre>
 420 </li>
 421 </ul>
 422 </li>
 423 </ul>
 424 <!-- ============ METHOD DETAIL ========== -->
 425 <ul class="blockList">
 426 <li class="blockList"><a name="method.detail">
 427 <!--   -->
 428 </a>
 429 <h3>Method Detail</h3>
 430 <a name="values--">
 431 <!--   -->
 432 </a>
 433 <ul class="blockList">
 434 <li class="blockList">
 435 <h4>values</h4>
 436 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>[]&nbsp;values()</pre>
 437 <div class="block">Returns an array containing the constants of this enum type, in
 438 the order they are declared.  This method may be used to iterate
 439 over the constants as follows:
 440 <pre>
 441 for (ConservationMethod c : ConservationMethod.values())
 442 &nbsp;   System.out.println(c);
 443 </pre></div>
 444 <dl>
 445 <dt><span class="returnLabel">Returns:</span></dt>
 446 <dd>an array containing the constants of this enum type, in the order they are declared</dd>
 447 </dl>
 448 </li>
 449 </ul>
 450 <a name="valueOf-java.lang.String-">
 451 <!--   -->
 452 </a>
 453 <ul class="blockList">
 454 <li class="blockList">
 455 <h4>valueOf</h4>
 456 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>&nbsp;valueOf(java.lang.String&nbsp;name)</pre>
 457 <div class="block">Returns the enum constant of this type with the specified name.
 458 The string must match <i>exactly</i> an identifier used to declare an
 459 enum constant in this type.  (Extraneous whitespace characters are
 460 not permitted.)</div>
 461 <dl>
 462 <dt><span class="paramLabel">Parameters:</span></dt>
 463 <dd><code>name</code> - the name of the enum constant to be returned.</dd>
 464 <dt><span class="returnLabel">Returns:</span></dt>
 465 <dd>the enum constant with the specified name</dd>
 466 <dt><span class="throwsLabel">Throws:</span></dt>
 467 <dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
 468 <dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
 469 </dl>
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 471 </ul>
 472 <a name="getMethod-java.lang.String-">
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 477 <h4>getMethod</h4>
 478 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a>&nbsp;getMethod(java.lang.String&nbsp;meth)</pre>
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