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  75 <ul class="subNavList">
  76 <li>Summary:&nbsp;</li>
  77 <li>Nested&nbsp;|&nbsp;</li>
  78 <li><a href="#enum.constant.summary">Enum Constants</a>&nbsp;|&nbsp;</li>
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  83 <li>Detail:&nbsp;</li>
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  94 <div class="header">
  95 <div class="subTitle">compbio.data.sequence</div>
  96 <h2 title="Enum Program" class="title">Enum Program</h2>
  97 </div>
  98 <div class="contentContainer">
  99 <ul class="inheritance">
 100 <li>java.lang.Object</li>
 101 <li>
 102 <ul class="inheritance">
 103 <li>java.lang.Enum&lt;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>&gt;</li>
 104 <li>
 105 <ul class="inheritance">
 106 <li>compbio.data.sequence.Program</li>
 107 </ul>
 108 </li>
 109 </ul>
 110 </li>
 111 </ul>
 112 <div class="description">
 113 <ul class="blockList">
 114 <li class="blockList">
 115 <dl>
 116 <dt>All Implemented Interfaces:</dt>
 117 <dd>java.io.Serializable, java.lang.Comparable&lt;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>&gt;</dd>
 118 </dl>
 119 <hr>
 120 <br>
 121 <pre>public enum <span class="typeNameLabel">Program</span>
 122 extends java.lang.Enum&lt;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>&gt;</pre>
 123 <div class="block">The list of programmes that can produce alignments</div>
 124 <dl>
 125 <dt><span class="simpleTagLabel">Author:</span></dt>
 126 <dd>pvtroshin</dd>
 127 </dl>
 128 </li>
 129 </ul>
 130 </div>
 131 <div class="summary">
 132 <ul class="blockList">
 133 <li class="blockList">
 134 <!-- =========== ENUM CONSTANT SUMMARY =========== -->
 135 <ul class="blockList">
 136 <li class="blockList"><a name="enum.constant.summary">
 137 <!--   -->
 138 </a>
 139 <h3>Enum Constant Summary</h3>
 140 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Enum Constant Summary table, listing enum constants, and an explanation">
 141 <caption><span>Enum Constants</span><span class="tabEnd">&nbsp;</span></caption>
 142 <tr>
 143 <th class="colOne" scope="col">Enum Constant and Description</th>
 144 </tr>
 145 <tr class="altColor">
 146 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#CLUSTAL">CLUSTAL</a></span></code>
 147 <div class="block">ClustalW</div>
 148 </td>
 149 </tr>
 150 <tr class="rowColor">
 151 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#ClustalO">ClustalO</a></span></code>
 152 <div class="block">ClustalO</div>
 153 </td>
 154 </tr>
 155 <tr class="altColor">
 156 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#GLprobs">GLprobs</a></span></code>
 157 <div class="block">GLprobs</div>
 158 </td>
 159 </tr>
 160 <tr class="rowColor">
 161 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Mafft">Mafft</a></span></code>
 162 <div class="block">Mafft</div>
 163 </td>
 164 </tr>
 165 <tr class="altColor">
 166 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#MSAprobs">MSAprobs</a></span></code>
 167 <div class="block">MSAprobs</div>
 168 </td>
 169 </tr>
 170 <tr class="rowColor">
 171 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Muscle">Muscle</a></span></code>
 172 <div class="block">Muscle</div>
 173 </td>
 174 </tr>
 175 <tr class="altColor">
 176 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Probcons">Probcons</a></span></code>
 177 <div class="block">Probcons</div>
 178 </td>
 179 </tr>
 180 <tr class="rowColor">
 181 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#Tcoffee">Tcoffee</a></span></code>
 182 <div class="block">Tcoffee</div>
 183 </td>
 184 </tr>
 185 </table>
 186 </li>
 187 </ul>
 188 <!-- ========== METHOD SUMMARY =========== -->
 189 <ul class="blockList">
 190 <li class="blockList"><a name="method.summary">
 191 <!--   -->
 192 </a>
 193 <h3>Method Summary</h3>
 194 <table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
 195 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
 196 <tr>
 197 <th class="colFirst" scope="col">Modifier and Type</th>
 198 <th class="colLast" scope="col">Method and Description</th>
 199 </tr>
 200 <tr id="i0" class="altColor">
 201 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></code></td>
 202 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#valueOf-java.lang.String-">valueOf</a></span>(java.lang.String&nbsp;name)</code>
 203 <div class="block">Returns the enum constant of this type with the specified name.</div>
 204 </td>
 205 </tr>
 206 <tr id="i1" class="rowColor">
 207 <td class="colFirst"><code>static <a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>[]</code></td>
 208 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/data/sequence/Program.html#values--">values</a></span>()</code>
 209 <div class="block">Returns an array containing the constants of this enum type, in
 210 the order they are declared.</div>
 211 </td>
 212 </tr>
 213 </table>
 214 <ul class="blockList">
 215 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Enum">
 216 <!--   -->
 217 </a>
 218 <h3>Methods inherited from class&nbsp;java.lang.Enum</h3>
 219 <code>clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf</code></li>
 220 </ul>
 221 <ul class="blockList">
 222 <li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
 223 <!--   -->
 224 </a>
 225 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 226 <code>getClass, notify, notifyAll, wait, wait, wait</code></li>
 227 </ul>
 228 </li>
 229 </ul>
 230 </li>
 231 </ul>
 232 </div>
 233 <div class="details">
 234 <ul class="blockList">
 235 <li class="blockList">
 236 <!-- ============ ENUM CONSTANT DETAIL =========== -->
 237 <ul class="blockList">
 238 <li class="blockList"><a name="enum.constant.detail">
 239 <!--   -->
 240 </a>
 241 <h3>Enum Constant Detail</h3>
 242 <a name="CLUSTAL">
 243 <!--   -->
 244 </a>
 245 <ul class="blockList">
 246 <li class="blockList">
 247 <h4>CLUSTAL</h4>
 248 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> CLUSTAL</pre>
 249 <div class="block">ClustalW</div>
 250 </li>
 251 </ul>
 252 <a name="ClustalO">
 253 <!--   -->
 254 </a>
 255 <ul class="blockList">
 256 <li class="blockList">
 257 <h4>ClustalO</h4>
 258 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> ClustalO</pre>
 259 <div class="block">ClustalO</div>
 260 </li>
 261 </ul>
 262 <a name="Mafft">
 263 <!--   -->
 264 </a>
 265 <ul class="blockList">
 266 <li class="blockList">
 267 <h4>Mafft</h4>
 268 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Mafft</pre>
 269 <div class="block">Mafft</div>
 270 </li>
 271 </ul>
 272 <a name="Muscle">
 273 <!--   -->
 274 </a>
 275 <ul class="blockList">
 276 <li class="blockList">
 277 <h4>Muscle</h4>
 278 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Muscle</pre>
 279 <div class="block">Muscle</div>
 280 </li>
 281 </ul>
 282 <a name="Tcoffee">
 283 <!--   -->
 284 </a>
 285 <ul class="blockList">
 286 <li class="blockList">
 287 <h4>Tcoffee</h4>
 288 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Tcoffee</pre>
 289 <div class="block">Tcoffee</div>
 290 </li>
 291 </ul>
 292 <a name="Probcons">
 293 <!--   -->
 294 </a>
 295 <ul class="blockList">
 296 <li class="blockList">
 297 <h4>Probcons</h4>
 298 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> Probcons</pre>
 299 <div class="block">Probcons</div>
 300 </li>
 301 </ul>
 302 <a name="MSAprobs">
 303 <!--   -->
 304 </a>
 305 <ul class="blockList">
 306 <li class="blockList">
 307 <h4>MSAprobs</h4>
 308 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> MSAprobs</pre>
 309 <div class="block">MSAprobs</div>
 310 </li>
 311 </ul>
 312 <a name="GLprobs">
 313 <!--   -->
 314 </a>
 315 <ul class="blockListLast">
 316 <li class="blockList">
 317 <h4>GLprobs</h4>
 318 <pre>public static final&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a> GLprobs</pre>
 319 <div class="block">GLprobs</div>
 320 </li>
 321 </ul>
 322 </li>
 323 </ul>
 324 <!-- ============ METHOD DETAIL ========== -->
 325 <ul class="blockList">
 326 <li class="blockList"><a name="method.detail">
 327 <!--   -->
 328 </a>
 329 <h3>Method Detail</h3>
 330 <a name="values--">
 331 <!--   -->
 332 </a>
 333 <ul class="blockList">
 334 <li class="blockList">
 335 <h4>values</h4>
 336 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>[]&nbsp;values()</pre>
 337 <div class="block">Returns an array containing the constants of this enum type, in
 338 the order they are declared.  This method may be used to iterate
 339 over the constants as follows:
 340 <pre>
 341 for (Program c : Program.values())
 342 &nbsp;   System.out.println(c);
 343 </pre></div>
 344 <dl>
 345 <dt><span class="returnLabel">Returns:</span></dt>
 346 <dd>an array containing the constants of this enum type, in the order they are declared</dd>
 347 </dl>
 348 </li>
 349 </ul>
 350 <a name="valueOf-java.lang.String-">
 351 <!--   -->
 352 </a>
 353 <ul class="blockListLast">
 354 <li class="blockList">
 355 <h4>valueOf</h4>
 356 <pre>public static&nbsp;<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a>&nbsp;valueOf(java.lang.String&nbsp;name)</pre>
 357 <div class="block">Returns the enum constant of this type with the specified name.
 358 The string must match <i>exactly</i> an identifier used to declare an
 359 enum constant in this type.  (Extraneous whitespace characters are
 360 not permitted.)</div>
 361 <dl>
 362 <dt><span class="paramLabel">Parameters:</span></dt>
 363 <dd><code>name</code> - the name of the enum constant to be returned.</dd>
 364 <dt><span class="returnLabel">Returns:</span></dt>
 365 <dd>the enum constant with the specified name</dd>
 366 <dt><span class="throwsLabel">Throws:</span></dt>
 367 <dd><code>java.lang.IllegalArgumentException</code> - if this enum type has no constant with the specified name</dd>
 368 <dd><code>java.lang.NullPointerException</code> - if the argument is null</dd>
 369 </dl>
 370 </li>
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