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   6 <title>Uses of Package compbio.data.sequence</title>
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  72 <div class="header">
  73 <h1 title="Uses of Package compbio.data.sequence" class="title">Uses of Package<br>compbio.data.sequence</h1>
  74 </div>
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  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.data.sequence">compbio.data.sequence</a></td>
  87 <td class="colLast">
  88 <div class="block">A data model for multiple sequence alignment web services and utility methods
  89  that work on the objects of this model.</div>
  90 </td>
  91 </tr>
  92 <tr class="rowColor">
  93 <td class="colFirst"><a href="#compbio.metadata">compbio.metadata</a></td>
  94 <td class="colLast">
  95 <div class="block">A meta-data model for multiple sequence alignment web services
  96  Classes in this package have no dependencies to other sources in the project.</div>
  97 </td>
  98 </tr>
  99 </tbody>
 100 </table>
 101 </li>
 102 <li class="blockList"><a name="compbio.data.sequence">
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 104 </a>
 105 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
 106 <caption><span>Classes in <a href="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> used by <a href="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></span><span class="tabEnd">&nbsp;</span></caption>
 107 <tr>
 108 <th class="colOne" scope="col">Class and Description</th>
 109 </tr>
 110 <tbody>
 111 <tr class="altColor">
 112 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/Alignment.html#compbio.data.sequence">Alignment</a>
 113 <div class="block">Multiple sequence alignment.</div>
 114 </td>
 115 </tr>
 116 <tr class="rowColor">
 117 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/AlignmentMetadata.html#compbio.data.sequence">AlignmentMetadata</a>
 118 <div class="block">Alignment metadata e.g.</div>
 119 </td>
 120 </tr>
 121 <tr class="altColor">
 122 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/ConservationMethod.html#compbio.data.sequence">ConservationMethod</a>
 123 <div class="block">Enumeration listing of all the supported methods.</div>
 124 </td>
 125 </tr>
 126 <tr class="rowColor">
 127 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/DisemblResult.html#compbio.data.sequence">DisemblResult</a>&nbsp;</td>
 128 </tr>
 129 <tr class="altColor">
 130 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/DisorderMethod.html#compbio.data.sequence">DisorderMethod</a>&nbsp;</td>
 131 </tr>
 132 <tr class="rowColor">
 133 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/FastaSequence.html#compbio.data.sequence">FastaSequence</a>
 134 <div class="block">A FASTA formatted sequence.</div>
 135 </td>
 136 </tr>
 137 <tr class="altColor">
 138 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/GlobProtResult.html#compbio.data.sequence">GlobProtResult</a>&nbsp;</td>
 139 </tr>
 140 <tr class="rowColor">
 141 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/IUPredResult.html#compbio.data.sequence">IUPredResult</a>&nbsp;</td>
 142 </tr>
 143 <tr class="altColor">
 144 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/Program.html#compbio.data.sequence">Program</a>
 145 <div class="block">The list of programmes that can produce alignments</div>
 146 </td>
 147 </tr>
 148 <tr class="rowColor">
 149 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/Range.html#compbio.data.sequence">Range</a>&nbsp;</td>
 150 </tr>
 151 <tr class="altColor">
 152 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/RNAStructReader.AlifoldLine.html#compbio.data.sequence">RNAStructReader.AlifoldLine</a>&nbsp;</td>
 153 </tr>
 154 <tr class="rowColor">
 155 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/RNAStructReader.AlifoldResult.html#compbio.data.sequence">RNAStructReader.AlifoldResult</a>&nbsp;</td>
 156 </tr>
 157 <tr class="altColor">
 158 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/RNAStructReader.RNAOut.html#compbio.data.sequence">RNAStructReader.RNAOut</a>&nbsp;</td>
 159 </tr>
 160 <tr class="rowColor">
 161 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/RNAStructScoreManager.html#compbio.data.sequence">RNAStructScoreManager</a>&nbsp;</td>
 162 </tr>
 163 <tr class="altColor">
 164 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/Score.html#compbio.data.sequence">Score</a>
 165 <div class="block">A value class for AACon annotation results storage.</div>
 166 </td>
 167 </tr>
 168 <tr class="rowColor">
 169 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/ScoreManager.html#compbio.data.sequence">ScoreManager</a>&nbsp;</td>
 170 </tr>
 171 <tr class="altColor">
 172 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/ScoreManager.ScoreHolder.html#compbio.data.sequence">ScoreManager.ScoreHolder</a>&nbsp;</td>
 173 </tr>
 174 <tr class="rowColor">
 175 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/SMERFSConstraints.html#compbio.data.sequence">SMERFSConstraints</a>
 176 <div class="block">Enumeration defining two constraints for SMERFS columns score calculation.</div>
 177 </td>
 178 </tr>
 179 <tr class="altColor">
 180 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/UnknownFileFormatException.html#compbio.data.sequence">UnknownFileFormatException</a>&nbsp;</td>
 181 </tr>
 182 </tbody>
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 188 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
 189 <caption><span>Classes in <a href="../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> used by <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a></span><span class="tabEnd">&nbsp;</span></caption>
 190 <tr>
 191 <th class="colOne" scope="col">Class and Description</th>
 192 </tr>
 193 <tbody>
 194 <tr class="altColor">
 195 <td class="colOne"><a href="../../../compbio/data/sequence/class-use/FastaSequence.html#compbio.metadata">FastaSequence</a>
 196 <div class="block">A FASTA formatted sequence.</div>
 197 </td>
 198 </tr>
 199 </tbody>
 200 </table>
 201 </li>
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