website/docs/full_javadoc/compbio/data/msa/class-use/Metadata.html

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   6 <title>Uses of Interface compbio.data.msa.Metadata</title>
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  73 <h2 title="Uses of Interface compbio.data.msa.Metadata" class="title">Uses of Interface<br>compbio.data.msa.Metadata</h2>
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  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.data.msa">compbio.data.msa</a></td>
  87 <td class="colLast">
  88 <div class="block">Web Service interfaces for JAva Bioinformatics Analysis Web Services.</div>
  89 </td>
  90 </tr>
  91 <tr class="rowColor">
  92 <td class="colFirst"><a href="#compbio.ws.client">compbio.ws.client</a></td>
  93 <td class="colLast">
  94 <div class="block">A command line client and web services testing client for
  95  JAva Bioinformatics Analysis Web Services.</div>
  96 </td>
  97 </tr>
  98 <tr class="altColor">
  99 <td class="colFirst"><a href="#compbio.ws.server">compbio.ws.server</a></td>
 100 <td class="colLast">&nbsp;</td>
 101 </tr>
 102 </tbody>
 103 </table>
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 105 <li class="blockList">
 106 <ul class="blockList">
 107 <li class="blockList"><a name="compbio.data.msa">
 108 <!--   -->
 109 </a>
 110 <h3>Uses of <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a> in <a href="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</a></h3>
 111 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subinterfaces, and an explanation">
 112 <caption><span>Subinterfaces of <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a> in <a href="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</a></span><span class="tabEnd">&nbsp;</span></caption>
 113 <tr>
 114 <th class="colFirst" scope="col">Modifier and Type</th>
 115 <th class="colLast" scope="col">Interface and Description</th>
 116 </tr>
 117 <tbody>
 118 <tr class="altColor">
 119 <td class="colFirst"><code>interface&nbsp;</code></td>
 120 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</a>&lt;T&gt;</span></code>
 121 <div class="block">Multiple Sequence Alignment (MSA) Web Services Interface</div>
 122 </td>
 123 </tr>
 124 <tr class="rowColor">
 125 <td class="colFirst"><code>interface&nbsp;</code></td>
 126 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;</span></code>
 127 <div class="block">Interface for tools that results to one or more annotation to sequence(s)
 128
 129  Single, multiple sequences their groups or alignments can be annotated</div>
 130 </td>
 131 </tr>
 132 </tbody>
 133 </table>
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 136 <!--   -->
 137 </a>
 138 <h3>Uses of <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a> in <a href="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</a></h3>
 139 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 140 <caption><span>Methods in <a href="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</a> with parameters of type <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a></span><span class="tabEnd">&nbsp;</span></caption>
 141 <tr>
 142 <th class="colFirst" scope="col">Modifier and Type</th>
 143 <th class="colLast" scope="col">Method and Description</th>
 144 </tr>
 145 <tbody>
 146 <tr class="altColor">
 147 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;java.util.List&lt;<a href="../../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a>&lt;T&gt;&gt;</code></td>
 148 <td class="colLast"><span class="typeNameLabel">MetadataHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/MetadataHelper.html#getLimits-compbio.data.msa.Metadata-">getLimits</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws)</code>
 149 <div class="block">Returns a list of limits supported by web service Each limit correspond
 150  to a particular preset.</div>
 151 </td>
 152 </tr>
 153 <tr class="rowColor">
 154 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;java.util.List&lt;<a href="../../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;T&gt;&gt;</code></td>
 155 <td class="colLast"><span class="typeNameLabel">MetadataHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/MetadataHelper.html#getParametersList-compbio.data.msa.Metadata-">getParametersList</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws)</code>
 156 <div class="block">Returns a list of options supported by web service</div>
 157 </td>
 158 </tr>
 159 <tr class="altColor">
 160 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;java.util.List&lt;<a href="../../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;T&gt;&gt;</code></td>
 161 <td class="colLast"><span class="typeNameLabel">MetadataHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/MetadataHelper.html#getParametersList-compbio.data.msa.Metadata-java.lang.String-">getParametersList</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws,
 162                  java.lang.String&nbsp;host)</code>
 163 <div class="block">Returns a list of options supported by web service</div>
 164 </td>
 165 </tr>
 166 <tr class="rowColor">
 167 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;<a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;T&gt;</code></td>
 168 <td class="colLast"><span class="typeNameLabel">MetadataHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/MetadataHelper.html#getPreset-compbio.data.msa.Metadata-java.lang.String-">getPreset</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws,
 169          java.lang.String&nbsp;presetName)</code>
 170 <div class="block">Returns <code>Preset</code> by its name</div>
 171 </td>
 172 </tr>
 173 <tr class="altColor">
 174 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;<a href="../../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</a>&lt;T&gt;</code></td>
 175 <td class="colLast"><span class="typeNameLabel">MetadataHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/MetadataHelper.html#getPresetList-compbio.data.msa.Metadata-">getPresetList</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws)</code>
 176 <div class="block">Returns an objects from which the list of presets supported by web
 177  service <T> can be obtained</div>
 178 </td>
 179 </tr>
 180 <tr class="rowColor">
 181 <td class="colFirst"><code>private &lt;T&gt;&nbsp;void</code></td>
 182 <td class="colLast"><span class="typeNameLabel">WSTester.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/WSTester.html#testMetadata-compbio.data.msa.Metadata-">testMetadata</a></span>(<a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws)</code>&nbsp;</td>
 183 </tr>
 184 </tbody>
 185 </table>
 186 </li>
 187 <li class="blockList"><a name="compbio.ws.server">
 188 <!--   -->
 189 </a>
 190 <h3>Uses of <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a> in <a href="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</a></h3>
 191 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
 192 <caption><span>Classes in <a href="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</a> that implement <a href="../../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a></span><span class="tabEnd">&nbsp;</span></caption>
 193 <tr>
 194 <th class="colFirst" scope="col">Modifier and Type</th>
 195 <th class="colLast" scope="col">Class and Description</th>
 196 </tr>
 197 <tbody>
 198 <tr class="altColor">
 199 <td class="colFirst"><code>class&nbsp;</code></td>
 200 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a></span></code>&nbsp;</td>
 201 </tr>
 202 <tr class="rowColor">
 203 <td class="colFirst"><code>class&nbsp;</code></td>
 204 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</a></span></code>&nbsp;</td>
 205 </tr>
 206 <tr class="altColor">
 207 <td class="colFirst"><code>class&nbsp;</code></td>
 208 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</a></span></code>&nbsp;</td>
 209 </tr>
 210 <tr class="rowColor">
 211 <td class="colFirst"><code>class&nbsp;</code></td>
 212 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</a></span></code>&nbsp;</td>
 213 </tr>
 214 <tr class="altColor">
 215 <td class="colFirst"><code>class&nbsp;</code></td>
 216 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</a></span></code>&nbsp;</td>
 217 </tr>
 218 <tr class="rowColor">
 219 <td class="colFirst"><code>class&nbsp;</code></td>
 220 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/GLprobsWS.html" title="class in compbio.ws.server">GLprobsWS</a></span></code>&nbsp;</td>
 221 </tr>
 222 <tr class="altColor">
 223 <td class="colFirst"><code>class&nbsp;</code></td>
 224 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</a></span></code>&nbsp;</td>
 225 </tr>
 226 <tr class="rowColor">
 227 <td class="colFirst"><code>class&nbsp;</code></td>
 228 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</a></span></code>&nbsp;</td>
 229 </tr>
 230 <tr class="altColor">
 231 <td class="colFirst"><code>class&nbsp;</code></td>
 232 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</a></span></code>&nbsp;</td>
 233 </tr>
 234 <tr class="rowColor">
 235 <td class="colFirst"><code>class&nbsp;</code></td>
 236 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/MSAprobsWS.html" title="class in compbio.ws.server">MSAprobsWS</a></span></code>&nbsp;</td>
 237 </tr>
 238 <tr class="altColor">
 239 <td class="colFirst"><code>class&nbsp;</code></td>
 240 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</a></span></code>&nbsp;</td>
 241 </tr>
 242 <tr class="rowColor">
 243 <td class="colFirst"><code>class&nbsp;</code></td>
 244 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</a></span></code>&nbsp;</td>
 245 </tr>
 246 <tr class="altColor">
 247 <td class="colFirst"><code>class&nbsp;</code></td>
 248 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/RNAalifoldWS.html" title="class in compbio.ws.server">RNAalifoldWS</a></span></code>&nbsp;</td>
 249 </tr>
 250 <tr class="rowColor">
 251 <td class="colFirst"><code>class&nbsp;</code></td>
 252 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></span></code>&nbsp;</td>
 253 </tr>
 254 </tbody>
 255 </table>
 256 </li>
 257 </ul>
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