website/docs/full_javadoc/compbio/data/sequence/class-use/ScoreManager.html

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   6 <title>Uses of Class compbio.data.sequence.ScoreManager</title>
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  72 <div class="header">
  73 <h2 title="Uses of Class compbio.data.sequence.ScoreManager" class="title">Uses of Class<br>compbio.data.sequence.ScoreManager</h2>
  74 </div>
  75 <div class="classUseContainer">
  76 <ul class="blockList">
  77 <li class="blockList">
  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.data.msa">compbio.data.msa</a></td>
  87 <td class="colLast">
  88 <div class="block">Web Service interfaces for JAva Bioinformatics Analysis Web Services.</div>
  89 </td>
  90 </tr>
  91 <tr class="rowColor">
  92 <td class="colFirst"><a href="#compbio.data.msa.jaxws">compbio.data.msa.jaxws</a></td>
  93 <td class="colLast">&nbsp;</td>
  94 </tr>
  95 <tr class="altColor">
  96 <td class="colFirst"><a href="#compbio.data.sequence">compbio.data.sequence</a></td>
  97 <td class="colLast">
  98 <div class="block">A data model for multiple sequence alignment web services and utility methods
  99  that work on the objects of this model.</div>
 100 </td>
 101 </tr>
 102 <tr class="rowColor">
 103 <td class="colFirst"><a href="#compbio.runner.conservation">compbio.runner.conservation</a></td>
 104 <td class="colLast">&nbsp;</td>
 105 </tr>
 106 <tr class="altColor">
 107 <td class="colFirst"><a href="#compbio.runner.disorder">compbio.runner.disorder</a></td>
 108 <td class="colLast">&nbsp;</td>
 109 </tr>
 110 <tr class="rowColor">
 111 <td class="colFirst"><a href="#compbio.ws.client">compbio.ws.client</a></td>
 112 <td class="colLast">
 113 <div class="block">A command line client and web services testing client for
 114  JAva Bioinformatics Analysis Web Services.</div>
 115 </td>
 116 </tr>
 117 <tr class="altColor">
 118 <td class="colFirst"><a href="#compbio.ws.server">compbio.ws.server</a></td>
 119 <td class="colLast">&nbsp;</td>
 120 </tr>
 121 </tbody>
 122 </table>
 123 </li>
 124 <li class="blockList">
 125 <ul class="blockList">
 126 <li class="blockList"><a name="compbio.data.msa">
 127 <!--   -->
 128 </a>
 129 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</a></h3>
 130 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 131 <caption><span>Methods in <a href="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 132 <tr>
 133 <th class="colFirst" scope="col">Modifier and Type</th>
 134 <th class="colLast" scope="col">Method and Description</th>
 135 </tr>
 136 <tbody>
 137 <tr class="altColor">
 138 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 139 <td class="colLast"><span class="typeNameLabel">SequenceAnnotation.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/SequenceAnnotation.html#getAnnotation-java.lang.String-">getAnnotation</a></span>(java.lang.String&nbsp;jobId)</code>
 140 <div class="block">Return the result of the job.</div>
 141 </td>
 142 </tr>
 143 </tbody>
 144 </table>
 145 </li>
 146 <li class="blockList"><a name="compbio.data.msa.jaxws">
 147 <!--   -->
 148 </a>
 149 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></h3>
 150 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing fields, and an explanation">
 151 <caption><span>Fields in <a href="../../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a> declared as <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 152 <tr>
 153 <th class="colFirst" scope="col">Modifier and Type</th>
 154 <th class="colLast" scope="col">Field and Description</th>
 155 </tr>
 156 <tbody>
 157 <tr class="altColor">
 158 <td class="colFirst"><code>private <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 159 <td class="colLast"><span class="typeNameLabel">GetAnnotationResponse.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/GetAnnotationResponse.html#Z:Z_return">_return</a></span></code>&nbsp;</td>
 160 </tr>
 161 </tbody>
 162 </table>
 163 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 164 <caption><span>Methods in <a href="../../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 165 <tr>
 166 <th class="colFirst" scope="col">Modifier and Type</th>
 167 <th class="colLast" scope="col">Method and Description</th>
 168 </tr>
 169 <tbody>
 170 <tr class="altColor">
 171 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 172 <td class="colLast"><span class="typeNameLabel">GetAnnotationResponse.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/GetAnnotationResponse.html#getReturn--">getReturn</a></span>()</code>&nbsp;</td>
 173 </tr>
 174 </tbody>
 175 </table>
 176 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 177 <caption><span>Methods in <a href="../../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a> with parameters of type <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 178 <tr>
 179 <th class="colFirst" scope="col">Modifier and Type</th>
 180 <th class="colLast" scope="col">Method and Description</th>
 181 </tr>
 182 <tbody>
 183 <tr class="altColor">
 184 <td class="colFirst"><code>void</code></td>
 185 <td class="colLast"><span class="typeNameLabel">GetAnnotationResponse.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/msa/jaxws/GetAnnotationResponse.html#setReturn-compbio.data.sequence.ScoreManager-">setReturn</a></span>(<a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a>&nbsp;_return)</code>&nbsp;</td>
 186 </tr>
 187 </tbody>
 188 </table>
 189 </li>
 190 <li class="blockList"><a name="compbio.data.sequence">
 191 <!--   -->
 192 </a>
 193 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></h3>
 194 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation">
 195 <caption><span>Subclasses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></span><span class="tabEnd">&nbsp;</span></caption>
 196 <tr>
 197 <th class="colFirst" scope="col">Modifier and Type</th>
 198 <th class="colLast" scope="col">Class and Description</th>
 199 </tr>
 200 <tbody>
 201 <tr class="altColor">
 202 <td class="colFirst"><code>class&nbsp;</code></td>
 203 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/RNAStructScoreManager.html" title="class in compbio.data.sequence">RNAStructScoreManager</a></span></code>&nbsp;</td>
 204 </tr>
 205 </tbody>
 206 </table>
 207 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 208 <caption><span>Methods in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 209 <tr>
 210 <th class="colFirst" scope="col">Modifier and Type</th>
 211 <th class="colLast" scope="col">Method and Description</th>
 212 </tr>
 213 <tbody>
 214 <tr class="altColor">
 215 <td class="colFirst"><code>static <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 216 <td class="colLast"><span class="typeNameLabel">ScoreManager.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/ScoreManager.html#newInstance-java.util.Map-">newInstance</a></span>(java.util.Map&lt;java.lang.String,java.util.Set&lt;<a href="../../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&gt;&nbsp;data)</code>&nbsp;</td>
 217 </tr>
 218 <tr class="rowColor">
 219 <td class="colFirst"><code>static <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 220 <td class="colLast"><span class="typeNameLabel">ScoreManager.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/ScoreManager.html#newInstanceSingleScore-java.util.Map-">newInstanceSingleScore</a></span>(java.util.Map&lt;java.lang.String,<a href="../../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&nbsp;seqScoresMap)</code>&nbsp;</td>
 221 </tr>
 222 <tr class="altColor">
 223 <td class="colFirst"><code>static <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 224 <td class="colLast"><span class="typeNameLabel">ScoreManager.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/ScoreManager.html#newInstanceSingleSequence-java.util.Set-">newInstanceSingleSequence</a></span>(java.util.Set&lt;<a href="../../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a>&gt;&nbsp;data)</code>&nbsp;</td>
 225 </tr>
 226 </tbody>
 227 </table>
 228 </li>
 229 <li class="blockList"><a name="compbio.runner.conservation">
 230 <!--   -->
 231 </a>
 232 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/runner/conservation/package-summary.html">compbio.runner.conservation</a></h3>
 233 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 234 <caption><span>Methods in <a href="../../../../compbio/runner/conservation/package-summary.html">compbio.runner.conservation</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 235 <tr>
 236 <th class="colFirst" scope="col">Modifier and Type</th>
 237 <th class="colLast" scope="col">Method and Description</th>
 238 </tr>
 239 <tbody>
 240 <tr class="altColor">
 241 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 242 <td class="colLast"><span class="typeNameLabel">AACon.</span><code><span class="memberNameLink"><a href="../../../../compbio/runner/conservation/AACon.html#getResults-java.lang.String-">getResults</a></span>(java.lang.String&nbsp;workDirectory)</code>&nbsp;</td>
 243 </tr>
 244 </tbody>
 245 </table>
 246 </li>
 247 <li class="blockList"><a name="compbio.runner.disorder">
 248 <!--   -->
 249 </a>
 250 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/runner/disorder/package-summary.html">compbio.runner.disorder</a></h3>
 251 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 252 <caption><span>Methods in <a href="../../../../compbio/runner/disorder/package-summary.html">compbio.runner.disorder</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 253 <tr>
 254 <th class="colFirst" scope="col">Modifier and Type</th>
 255 <th class="colLast" scope="col">Method and Description</th>
 256 </tr>
 257 <tbody>
 258 <tr class="altColor">
 259 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 260 <td class="colLast"><span class="typeNameLabel">Jronn.</span><code><span class="memberNameLink"><a href="../../../../compbio/runner/disorder/Jronn.html#getResults-java.lang.String-">getResults</a></span>(java.lang.String&nbsp;workDirectory)</code>&nbsp;</td>
 261 </tr>
 262 <tr class="rowColor">
 263 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 264 <td class="colLast"><span class="typeNameLabel">IUPred.</span><code><span class="memberNameLink"><a href="../../../../compbio/runner/disorder/IUPred.html#getResults-java.lang.String-">getResults</a></span>(java.lang.String&nbsp;workDirectory)</code>&nbsp;</td>
 265 </tr>
 266 <tr class="altColor">
 267 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 268 <td class="colLast"><span class="typeNameLabel">Disembl.</span><code><span class="memberNameLink"><a href="../../../../compbio/runner/disorder/Disembl.html#getResults-java.lang.String-">getResults</a></span>(java.lang.String&nbsp;workDirectory)</code>&nbsp;</td>
 269 </tr>
 270 <tr class="rowColor">
 271 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 272 <td class="colLast"><span class="typeNameLabel">GlobPlot.</span><code><span class="memberNameLink"><a href="../../../../compbio/runner/disorder/GlobPlot.html#getResults-java.lang.String-">getResults</a></span>(java.lang.String&nbsp;workDirectory)</code>&nbsp;</td>
 273 </tr>
 274 </tbody>
 275 </table>
 276 </li>
 277 <li class="blockList"><a name="compbio.ws.client">
 278 <!--   -->
 279 </a>
 280 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</a></h3>
 281 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 282 <caption><span>Methods in <a href="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 283 <tr>
 284 <th class="colFirst" scope="col">Modifier and Type</th>
 285 <th class="colLast" scope="col">Method and Description</th>
 286 </tr>
 287 <tbody>
 288 <tr class="altColor">
 289 <td class="colFirst"><code>(package private) static <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 290 <td class="colLast"><span class="typeNameLabel">AAConClient.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/AAConClient.html#analize-java.io.File-compbio.data.msa.SequenceAnnotation-compbio.metadata.Preset-java.util.List-">analize</a></span>(java.io.File&nbsp;file,
 291        <a href="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;<a href="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a>&gt;&nbsp;wsproxy,
 292        <a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a>&gt;&nbsp;preset,
 293        java.util.List&lt;<a href="../../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a>&gt;&gt;&nbsp;customOptions)</code>
 294 <div class="block">Calculate conservation for sequences loaded from the file</div>
 295 </td>
 296 </tr>
 297 <tr class="rowColor">
 298 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;<a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 299 <td class="colLast"><span class="typeNameLabel">Jws2Client.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/Jws2Client.html#analize-java.io.File-compbio.data.msa.SequenceAnnotation-compbio.metadata.Preset-java.util.List-">analize</a></span>(java.io.File&nbsp;file,
 300        <a href="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;&nbsp;wsproxy,
 301        <a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;T&gt;&nbsp;preset,
 302        java.util.List&lt;<a href="../../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;T&gt;&gt;&nbsp;customOptions)</code>
 303 <div class="block">Calculate conservation for sequences loaded from the file</div>
 304 </td>
 305 </tr>
 306 <tr class="altColor">
 307 <td class="colFirst"><code>(package private) static &lt;T&gt;&nbsp;<a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 308 <td class="colLast"><span class="typeNameLabel">Jws2Client.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/Jws2Client.html#analize-java.util.List-compbio.data.msa.SequenceAnnotation-compbio.metadata.Preset-java.util.List-">analize</a></span>(java.util.List&lt;<a href="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;fastalist,
 309        <a href="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;&nbsp;wsproxy,
 310        <a href="../../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;T&gt;&nbsp;preset,
 311        java.util.List&lt;<a href="../../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;T&gt;&gt;&nbsp;customOptions)</code>
 312 <div class="block">Calculate conservation for sequences loaded from a FASTA record list structure</div>
 313 </td>
 314 </tr>
 315 </tbody>
 316 </table>
 317 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 318 <caption><span>Methods in <a href="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</a> with parameters of type <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 319 <tr>
 320 <th class="colFirst" scope="col">Modifier and Type</th>
 321 <th class="colLast" scope="col">Method and Description</th>
 322 </tr>
 323 <tbody>
 324 <tr class="altColor">
 325 <td class="colFirst"><code>(package private) static void</code></td>
 326 <td class="colLast"><span class="typeNameLabel">AAConClient.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/AAConClient.html#writeOut-java.io.Writer-compbio.data.sequence.ScoreManager-">writeOut</a></span>(java.io.Writer&nbsp;writer,
 327         <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a>&nbsp;result)</code>
 328 <div class="block">Outputs AAcon results into the file represented by the outStream</div>
 329 </td>
 330 </tr>
 331 <tr class="rowColor">
 332 <td class="colFirst"><code>(package private) static void</code></td>
 333 <td class="colLast"><span class="typeNameLabel">IOHelper.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/client/IOHelper.html#writeOut-java.io.Writer-compbio.data.sequence.ScoreManager-">writeOut</a></span>(java.io.Writer&nbsp;writer,
 334         <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a>&nbsp;results)</code>
 335 <div class="block">Outputs AAcon results into the file represented by the outStream</div>
 336 </td>
 337 </tr>
 338 </tbody>
 339 </table>
 340 </li>
 341 <li class="blockList"><a name="compbio.ws.server">
 342 <!--   -->
 343 </a>
 344 <h3>Uses of <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a> in <a href="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</a></h3>
 345 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 346 <caption><span>Methods in <a href="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</a> that return <a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></span><span class="tabEnd">&nbsp;</span></caption>
 347 <tr>
 348 <th class="colFirst" scope="col">Modifier and Type</th>
 349 <th class="colLast" scope="col">Method and Description</th>
 350 </tr>
 351 <tbody>
 352 <tr class="altColor">
 353 <td class="colFirst"><code><a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 354 <td class="colLast"><span class="typeNameLabel">SequenceAnnotationService.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/SequenceAnnotationService.html#getAnnotation-java.lang.String-">getAnnotation</a></span>(java.lang.String&nbsp;jobId)</code>&nbsp;</td>
 355 </tr>
 356 <tr class="rowColor">
 357 <td class="colFirst"><code>static &lt;T&gt;&nbsp;<a href="../../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></code></td>
 358 <td class="colLast"><span class="typeNameLabel">WSUtil.</span><code><span class="memberNameLink"><a href="../../../../compbio/ws/server/WSUtil.html#getAnnotation-java.lang.String-org.apache.log4j.Logger-">getAnnotation</a></span>(java.lang.String&nbsp;jobId,
 359              org.apache.log4j.Logger&nbsp;log)</code>&nbsp;</td>
 360 </tr>
 361 </tbody>
 362 </table>
 363 </li>
 364 </ul>
 365 </li>
 366 </ul>
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