website/docs/full_javadoc/compbio/metadata/class-use/Parameter.html

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   6 <title>Uses of Class compbio.metadata.Parameter</title>
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  73 <h2 title="Uses of Class compbio.metadata.Parameter" class="title">Uses of Class<br>compbio.metadata.Parameter</h2>
  74 </div>
  75 <div class="classUseContainer">
  76 <ul class="blockList">
  77 <li class="blockList">
  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.metadata">compbio.metadata</a></td>
  87 <td class="colLast">
  88 <div class="block">A meta-data model for multiple sequence alignment web services
  89  Classes in this package have no dependencies to other sources in the project.</div>
  90 </td>
  91 </tr>
  92 <tr class="rowColor">
  93 <td class="colFirst"><a href="#compbio.runner">compbio.runner</a></td>
  94 <td class="colLast">
  95 <div class="block">Utilities commonly used by all runners.</div>
  96 </td>
  97 </tr>
  98 </tbody>
  99 </table>
 100 </li>
 101 <li class="blockList">
 102 <ul class="blockList">
 103 <li class="blockList"><a name="compbio.metadata">
 104 <!--   -->
 105 </a>
 106 <h3>Uses of <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a> in <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a></h3>
 107 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing fields, and an explanation">
 108 <caption><span>Fields in <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a> with type parameters of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 109 <tr>
 110 <th class="colFirst" scope="col">Modifier and Type</th>
 111 <th class="colLast" scope="col">Field and Description</th>
 112 </tr>
 113 <tbody>
 114 <tr class="altColor">
 115 <td class="colFirst"><code>(package private) java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;<a href="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</a>&gt;&gt;</code></td>
 116 <td class="colLast"><span class="typeNameLabel">RunnerConfig.</span><code><span class="memberNameLink"><a href="../../../compbio/metadata/RunnerConfig.html#parameters">parameters</a></span></code>&nbsp;</td>
 117 </tr>
 118 </tbody>
 119 </table>
 120 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 121 <caption><span>Methods in <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a> that return types with arguments of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 122 <tr>
 123 <th class="colFirst" scope="col">Modifier and Type</th>
 124 <th class="colLast" scope="col">Method and Description</th>
 125 </tr>
 126 <tbody>
 127 <tr class="altColor">
 128 <td class="colFirst"><code>java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;<a href="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</a>&gt;&gt;</code></td>
 129 <td class="colLast"><span class="typeNameLabel">RunnerConfig.</span><code><span class="memberNameLink"><a href="../../../compbio/metadata/RunnerConfig.html#getParameters--">getParameters</a></span>()</code>
 130 <div class="block">Returns the list of parameters supported executable of type T.</div>
 131 </td>
 132 </tr>
 133 </tbody>
 134 </table>
 135 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 136 <caption><span>Methods in <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a> with parameters of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 137 <tr>
 138 <th class="colFirst" scope="col">Modifier and Type</th>
 139 <th class="colLast" scope="col">Method and Description</th>
 140 </tr>
 141 <tbody>
 142 <tr class="altColor">
 143 <td class="colFirst"><code>void</code></td>
 144 <td class="colLast"><span class="typeNameLabel">RunnerConfig.</span><code><span class="memberNameLink"><a href="../../../compbio/metadata/RunnerConfig.html#addParameter-compbio.metadata.Parameter-">addParameter</a></span>(<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;<a href="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</a>&gt;&nbsp;param)</code>
 145 <div class="block">Adds parameter to the internal parameter list</div>
 146 </td>
 147 </tr>
 148 </tbody>
 149 </table>
 150 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 151 <caption><span>Method parameters in <a href="../../../compbio/metadata/package-summary.html">compbio.metadata</a> with type arguments of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 152 <tr>
 153 <th class="colFirst" scope="col">Modifier and Type</th>
 154 <th class="colLast" scope="col">Method and Description</th>
 155 </tr>
 156 <tbody>
 157 <tr class="altColor">
 158 <td class="colFirst"><code>void</code></td>
 159 <td class="colLast"><span class="typeNameLabel">RunnerConfig.</span><code><span class="memberNameLink"><a href="../../../compbio/metadata/RunnerConfig.html#setParameters-java.util.List-">setParameters</a></span>(java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;<a href="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</a>&gt;&gt;&nbsp;parameters)</code>
 160 <div class="block">Sets the list of parameters as internal list</div>
 161 </td>
 162 </tr>
 163 </tbody>
 164 </table>
 165 </li>
 166 <li class="blockList"><a name="compbio.runner">
 167 <!--   -->
 168 </a>
 169 <h3>Uses of <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a> in <a href="../../../compbio/runner/package-summary.html">compbio.runner</a></h3>
 170 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 171 <caption><span>Methods in <a href="../../../compbio/runner/package-summary.html">compbio.runner</a> that return types with arguments of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 172 <tr>
 173 <th class="colFirst" scope="col">Modifier and Type</th>
 174 <th class="colLast" scope="col">Method and Description</th>
 175 </tr>
 176 <tbody>
 177 <tr class="altColor">
 178 <td class="colFirst"><code>java.util.Map&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;,java.lang.String&gt;</code></td>
 179 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getAllConstrainedParametersWithBorderValues-boolean-">getAllConstrainedParametersWithBorderValues</a></span>(boolean&nbsp;minValue)</code>&nbsp;</td>
 180 </tr>
 181 <tr class="rowColor">
 182 <td class="colFirst"><code>java.util.Map&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;,java.lang.String&gt;</code></td>
 183 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getAllConstrainedParametersWithRandomValues--">getAllConstrainedParametersWithRandomValues</a></span>()</code>&nbsp;</td>
 184 </tr>
 185 <tr class="altColor">
 186 <td class="colFirst"><code>java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&gt;</code></td>
 187 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getAllParameters--">getAllParameters</a></span>()</code>&nbsp;</td>
 188 </tr>
 189 </tbody>
 190 </table>
 191 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 192 <caption><span>Methods in <a href="../../../compbio/runner/package-summary.html">compbio.runner</a> with parameters of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 193 <tr>
 194 <th class="colFirst" scope="col">Modifier and Type</th>
 195 <th class="colLast" scope="col">Method and Description</th>
 196 </tr>
 197 <tbody>
 198 <tr class="altColor">
 199 <td class="colFirst"><code>(package private) java.lang.String</code></td>
 200 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getLowBorderValue-compbio.metadata.Parameter-">getLowBorderValue</a></span>(<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&nbsp;param)</code>&nbsp;</td>
 201 </tr>
 202 <tr class="rowColor">
 203 <td class="colFirst"><code>(package private) java.lang.String</code></td>
 204 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getRandomValue-compbio.metadata.Parameter-">getRandomValue</a></span>(<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&nbsp;param)</code>&nbsp;</td>
 205 </tr>
 206 <tr class="altColor">
 207 <td class="colFirst"><code>(package private) java.lang.String</code></td>
 208 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getUpperBorderValue-compbio.metadata.Parameter-">getUpperBorderValue</a></span>(<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&nbsp;param)</code>&nbsp;</td>
 209 </tr>
 210 <tr class="rowColor">
 211 <td class="colFirst"><code>(package private) static java.lang.String</code></td>
 212 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#getValue-compbio.metadata.Parameter-">getValue</a></span>(<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&nbsp;param)</code>&nbsp;</td>
 213 </tr>
 214 </tbody>
 215 </table>
 216 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 217 <caption><span>Method parameters in <a href="../../../compbio/runner/package-summary.html">compbio.runner</a> with type arguments of type <a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></span><span class="tabEnd">&nbsp;</span></caption>
 218 <tr>
 219 <th class="colFirst" scope="col">Modifier and Type</th>
 220 <th class="colLast" scope="col">Method and Description</th>
 221 </tr>
 222 <tbody>
 223 <tr class="altColor">
 224 <td class="colFirst"><code>java.util.List&lt;java.lang.String&gt;</code></td>
 225 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#parametersToCommandString-java.util.List-java.util.Map-">parametersToCommandString</a></span>(java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&gt;&nbsp;orderedList,
 226                          java.util.Map&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;,java.lang.String&gt;&nbsp;prmValue)</code>&nbsp;</td>
 227 </tr>
 228 <tr class="rowColor">
 229 <td class="colFirst"><code>java.util.List&lt;java.lang.String&gt;</code></td>
 230 <td class="colLast"><span class="typeNameLabel">OptionCombinator.</span><code><span class="memberNameLink"><a href="../../../compbio/runner/OptionCombinator.html#parametersToCommandString-java.util.List-java.util.Map-">parametersToCommandString</a></span>(java.util.List&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;&gt;&nbsp;orderedList,
 231                          java.util.Map&lt;<a href="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a>&lt;?&gt;,java.lang.String&gt;&nbsp;prmValue)</code>&nbsp;</td>
 232 </tr>
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