website/docs/full_javadoc/compbio/metadata/class-use/UnsupportedRuntimeException.html

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   6 <title>Uses of Class compbio.metadata.UnsupportedRuntimeException</title>
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  72 <div class="header">
  73 <h2 title="Uses of Class compbio.metadata.UnsupportedRuntimeException" class="title">Uses of Class<br>compbio.metadata.UnsupportedRuntimeException</h2>
  74 </div>
  75 <div class="classUseContainer">
  76 <ul class="blockList">
  77 <li class="blockList">
  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.data.msa">compbio.data.msa</a></td>
  87 <td class="colLast">
  88 <div class="block">Web Service interfaces for JAva Bioinformatics Analysis Web Services.</div>
  89 </td>
  90 </tr>
  91 <tr class="rowColor">
  92 <td class="colFirst"><a href="#compbio.engine.client">compbio.engine.client</a></td>
  93 <td class="colLast">&nbsp;</td>
  94 </tr>
  95 <tr class="altColor">
  96 <td class="colFirst"><a href="#compbio.ws.client">compbio.ws.client</a></td>
  97 <td class="colLast">
  98 <div class="block">A command line client and web services testing client for
  99  JAva Bioinformatics Analysis Web Services.</div>
 100 </td>
 101 </tr>
 102 <tr class="rowColor">
 103 <td class="colFirst"><a href="#compbio.ws.server">compbio.ws.server</a></td>
 104 <td class="colLast">&nbsp;</td>
 105 </tr>
 106 </tbody>
 107 </table>
 108 </li>
 109 <li class="blockList">
 110 <ul class="blockList">
 111 <li class="blockList"><a name="compbio.data.msa">
 112 <!--   -->
 113 </a>
 114 <h3>Uses of <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a> in <a href="../../../compbio/data/msa/package-summary.html">compbio.data.msa</a></h3>
 115 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 116 <caption><span>Methods in <a href="../../../compbio/data/msa/package-summary.html">compbio.data.msa</a> that throw <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a></span><span class="tabEnd">&nbsp;</span></caption>
 117 <tr>
 118 <th class="colFirst" scope="col">Modifier and Type</th>
 119 <th class="colLast" scope="col">Method and Description</th>
 120 </tr>
 121 <tbody>
 122 <tr class="altColor">
 123 <td class="colFirst"><code>java.lang.String</code></td>
 124 <td class="colLast"><span class="typeNameLabel">MsaWS.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/MsaWS.html#align-java.util.List-">align</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences)</code>
 125 <div class="block">Align a list of sequences with default settings.</div>
 126 </td>
 127 </tr>
 128 <tr class="rowColor">
 129 <td class="colFirst"><code>java.lang.String</code></td>
 130 <td class="colLast"><span class="typeNameLabel">SequenceAnnotation.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/SequenceAnnotation.html#analize-java.util.List-">analize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences)</code>
 131 <div class="block">Analyse the sequences.</div>
 132 </td>
 133 </tr>
 134 <tr class="altColor">
 135 <td class="colFirst"><code>java.lang.String</code></td>
 136 <td class="colLast"><span class="typeNameLabel">MsaWS.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/MsaWS.html#customAlign-java.util.List-java.util.List-">customAlign</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 137            java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</a>&gt;&gt;&nbsp;options)</code>
 138 <div class="block">Align a list of sequences with options.</div>
 139 </td>
 140 </tr>
 141 <tr class="rowColor">
 142 <td class="colFirst"><code>java.lang.String</code></td>
 143 <td class="colLast"><span class="typeNameLabel">SequenceAnnotation.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/SequenceAnnotation.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 144              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/data/msa/SequenceAnnotation.html" title="type parameter in SequenceAnnotation">T</a>&gt;&gt;&nbsp;options)</code>
 145 <div class="block">Analyse the sequences according to custom settings defined in options
 146  list.</div>
 147 </td>
 148 </tr>
 149 <tr class="altColor">
 150 <td class="colFirst"><code>java.lang.String</code></td>
 151 <td class="colLast"><span class="typeNameLabel">MsaWS.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/MsaWS.html#presetAlign-java.util.List-compbio.metadata.Preset-">presetAlign</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 152            <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</a>&gt;&nbsp;preset)</code>
 153 <div class="block">Align a list of sequences with preset.</div>
 154 </td>
 155 </tr>
 156 <tr class="rowColor">
 157 <td class="colFirst"><code>java.lang.String</code></td>
 158 <td class="colLast"><span class="typeNameLabel">SequenceAnnotation.</span><code><span class="memberNameLink"><a href="../../../compbio/data/msa/SequenceAnnotation.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 159              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/data/msa/SequenceAnnotation.html" title="type parameter in SequenceAnnotation">T</a>&gt;&nbsp;preset)</code>
 160 <div class="block">Analyse the sequences according to the preset settings.</div>
 161 </td>
 162 </tr>
 163 </tbody>
 164 </table>
 165 </li>
 166 <li class="blockList"><a name="compbio.engine.client">
 167 <!--   -->
 168 </a>
 169 <h3>Uses of <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a> in <a href="../../../compbio/engine/client/package-summary.html">compbio.engine.client</a></h3>
 170 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 171 <caption><span>Methods in <a href="../../../compbio/engine/client/package-summary.html">compbio.engine.client</a> that throw <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a></span><span class="tabEnd">&nbsp;</span></caption>
 172 <tr>
 173 <th class="colFirst" scope="col">Modifier and Type</th>
 174 <th class="colLast" scope="col">Method and Description</th>
 175 </tr>
 176 <tbody>
 177 <tr class="altColor">
 178 <td class="colFirst"><code>java.lang.String</code></td>
 179 <td class="colLast"><span class="typeNameLabel">ConfExecutable.</span><code><span class="memberNameLink"><a href="../../../compbio/engine/client/ConfExecutable.html#getCommand-compbio.engine.client.Executable.ExecProvider-">getCommand</a></span>(<a href="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</a>&nbsp;provider)</code>&nbsp;</td>
 180 </tr>
 181 </tbody>
 182 </table>
 183 </li>
 184 <li class="blockList"><a name="compbio.ws.client">
 185 <!--   -->
 186 </a>
 187 <h3>Uses of <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a> in <a href="../../../compbio/ws/client/package-summary.html">compbio.ws.client</a></h3>
 188 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 189 <caption><span>Methods in <a href="../../../compbio/ws/client/package-summary.html">compbio.ws.client</a> that throw <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a></span><span class="tabEnd">&nbsp;</span></caption>
 190 <tr>
 191 <th class="colFirst" scope="col">Modifier and Type</th>
 192 <th class="colLast" scope="col">Method and Description</th>
 193 </tr>
 194 <tbody>
 195 <tr class="altColor">
 196 <td class="colFirst"><code>private &lt;T&gt;&nbsp;boolean</code></td>
 197 <td class="colLast"><span class="typeNameLabel">WSTester.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/client/WSTester.html#presetAlign-compbio.data.msa.MsaWS-java.util.List-">presetAlign</a></span>(<a href="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</a>&lt;T&gt;&nbsp;msaws,
 198            java.util.List&lt;<a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;T&gt;&gt;&nbsp;presets)</code>
 199 <div class="block">Calls alignment with preset</div>
 200 </td>
 201 </tr>
 202 <tr class="rowColor">
 203 <td class="colFirst"><code>private &lt;T&gt;&nbsp;void</code></td>
 204 <td class="colLast"><span class="typeNameLabel">WSTester.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/client/WSTester.html#testMetadata-compbio.data.msa.Metadata-">testMetadata</a></span>(<a href="../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;&nbsp;msaws)</code>&nbsp;</td>
 205 </tr>
 206 </tbody>
 207 </table>
 208 </li>
 209 <li class="blockList"><a name="compbio.ws.server">
 210 <!--   -->
 211 </a>
 212 <h3>Uses of <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a> in <a href="../../../compbio/ws/server/package-summary.html">compbio.ws.server</a></h3>
 213 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 214 <caption><span>Methods in <a href="../../../compbio/ws/server/package-summary.html">compbio.ws.server</a> that throw <a href="../../../compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</a></span><span class="tabEnd">&nbsp;</span></caption>
 215 <tr>
 216 <th class="colFirst" scope="col">Modifier and Type</th>
 217 <th class="colLast" scope="col">Method and Description</th>
 218 </tr>
 219 <tbody>
 220 <tr class="altColor">
 221 <td class="colFirst"><code>java.lang.String</code></td>
 222 <td class="colLast"><span class="typeNameLabel">SequenceAnnotationService.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/SequenceAnnotationService.html#analize-java.util.List-">analize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences)</code>&nbsp;</td>
 223 </tr>
 224 <tr class="rowColor">
 225 <td class="colFirst"><code>java.lang.String</code></td>
 226 <td class="colLast"><span class="typeNameLabel">AAConWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/AAConWS.html#analize-java.util.List-">analize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences)</code>&nbsp;</td>
 227 </tr>
 228 <tr class="altColor">
 229 <td class="colFirst"><code>java.lang.String</code></td>
 230 <td class="colLast"><span class="typeNameLabel">RNAalifoldWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/RNAalifoldWS.html#analize-java.util.List-">analize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences)</code>&nbsp;</td>
 231 </tr>
 232 <tr class="rowColor">
 233 <td class="colFirst"><code>java.lang.String</code></td>
 234 <td class="colLast"><span class="typeNameLabel">AAConWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/AAConWS.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 235              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/runner/conservation/AACon.html" title="class in compbio.runner.conservation">AACon</a>&gt;&gt;&nbsp;options)</code>&nbsp;</td>
 236 </tr>
 237 <tr class="altColor">
 238 <td class="colFirst"><code>java.lang.String</code></td>
 239 <td class="colLast"><span class="typeNameLabel">DisemblWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/DisemblWS.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 240              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</a>&gt;&gt;&nbsp;options)</code>&nbsp;</td>
 241 </tr>
 242 <tr class="rowColor">
 243 <td class="colFirst"><code>java.lang.String</code></td>
 244 <td class="colLast"><span class="typeNameLabel">GlobPlotWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/GlobPlotWS.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 245              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</a>&gt;&gt;&nbsp;options)</code>&nbsp;</td>
 246 </tr>
 247 <tr class="altColor">
 248 <td class="colFirst"><code>java.lang.String</code></td>
 249 <td class="colLast"><span class="typeNameLabel">RNAalifoldWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/RNAalifoldWS.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 250              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/runner/structure/RNAalifold.html" title="class in compbio.runner.structure">RNAalifold</a>&gt;&gt;&nbsp;options)</code>&nbsp;</td>
 251 </tr>
 252 <tr class="rowColor">
 253 <td class="colFirst"><code>java.lang.String</code></td>
 254 <td class="colLast"><span class="typeNameLabel">SequenceAnnotationService.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/SequenceAnnotationService.html#customAnalize-java.util.List-java.util.List-">customAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 255              java.util.List&lt;<a href="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a>&lt;<a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="type parameter in SequenceAnnotationService">T</a>&gt;&gt;&nbsp;options)</code>&nbsp;</td>
 256 </tr>
 257 <tr class="altColor">
 258 <td class="colFirst"><code>java.lang.String</code></td>
 259 <td class="colLast"><span class="typeNameLabel">AAConWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/AAConWS.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 260              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/runner/conservation/AACon.html" title="class in compbio.runner.conservation">AACon</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 261 </tr>
 262 <tr class="rowColor">
 263 <td class="colFirst"><code>java.lang.String</code></td>
 264 <td class="colLast"><span class="typeNameLabel">DisemblWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/DisemblWS.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 265              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 266 </tr>
 267 <tr class="altColor">
 268 <td class="colFirst"><code>java.lang.String</code></td>
 269 <td class="colLast"><span class="typeNameLabel">GlobPlotWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/GlobPlotWS.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 270              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 271 </tr>
 272 <tr class="rowColor">
 273 <td class="colFirst"><code>java.lang.String</code></td>
 274 <td class="colLast"><span class="typeNameLabel">IUPredWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/IUPredWS.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 275              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder">IUPred</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 276 </tr>
 277 <tr class="altColor">
 278 <td class="colFirst"><code>java.lang.String</code></td>
 279 <td class="colLast"><span class="typeNameLabel">RNAalifoldWS.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/RNAalifoldWS.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 280              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/runner/structure/RNAalifold.html" title="class in compbio.runner.structure">RNAalifold</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 281 </tr>
 282 <tr class="rowColor">
 283 <td class="colFirst"><code>java.lang.String</code></td>
 284 <td class="colLast"><span class="typeNameLabel">SequenceAnnotationService.</span><code><span class="memberNameLink"><a href="../../../compbio/ws/server/SequenceAnnotationService.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></span>(java.util.List&lt;<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a>&gt;&nbsp;sequences,
 285              <a href="../../../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a>&lt;<a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="type parameter in SequenceAnnotationService">T</a>&gt;&nbsp;preset)</code>&nbsp;</td>
 286 </tr>
 287 </tbody>
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