website/docs/full_javadoc/compbio/ws/server/JronnWS.html

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  95 <div class="subTitle">compbio.ws.server</div>
  96 <h2 title="Class JronnWS" class="title">Class JronnWS</h2>
  97 </div>
  98 <div class="contentContainer">
  99 <ul class="inheritance">
 100 <li>java.lang.Object</li>
 101 <li>
 102 <ul class="inheritance">
 103 <li><a href="../../../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">compbio.ws.server.GenericMetadataService</a></li>
 104 <li>
 105 <ul class="inheritance">
 106 <li><a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server">compbio.ws.server.SequenceAnnotationService</a>&lt;<a href="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a>&gt;</li>
 107 <li>
 108 <ul class="inheritance">
 109 <li>compbio.ws.server.JronnWS</li>
 110 </ul>
 111 </li>
 112 </ul>
 113 </li>
 114 </ul>
 115 </li>
 116 </ul>
 117 <div class="description">
 118 <ul class="blockList">
 119 <li class="blockList">
 120 <dl>
 121 <dt>All Implemented Interfaces:</dt>
 122 <dd><a href="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a>, <a href="../../../compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a>, <a href="../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;<a href="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a>&gt;, <a href="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;<a href="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a>&gt;</dd>
 123 </dl>
 124 <hr>
 125 <br>
 126 <pre>public class <span class="typeNameLabel">JronnWS</span>
 127 extends <a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server">SequenceAnnotationService</a>&lt;<a href="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a>&gt;
 128 implements <a href="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;<a href="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a>&gt;</pre>
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 142 <caption><span>Fields</span><span class="tabEnd">&nbsp;</span></caption>
 143 <tr>
 144 <th class="colFirst" scope="col">Modifier and Type</th>
 145 <th class="colLast" scope="col">Field and Description</th>
 146 </tr>
 147 <tr class="altColor">
 148 <td class="colFirst"><code>private static org.apache.log4j.Logger</code></td>
 149 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/ws/server/JronnWS.html#log">log</a></span></code>&nbsp;</td>
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 154 <!--   -->
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 156 <h3>Fields inherited from interface&nbsp;compbio.data.msa.<a href="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a></h3>
 157 <code><a href="../../../compbio/data/msa/JABAService.html#JABAWS_VERSION">JABAWS_VERSION</a>, <a href="../../../compbio/data/msa/JABAService.html#SERVICE_NAMESPACE">SERVICE_NAMESPACE</a>, <a href="../../../compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE">V2_SERVICE_NAMESPACE</a>, <a href="../../../compbio/data/msa/JABAService.html#V3_SERVICE_NAMESPACE">V3_SERVICE_NAMESPACE</a></code></li>
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 168 <caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
 169 <tr>
 170 <th class="colOne" scope="col">Constructor and Description</th>
 171 </tr>
 172 <tr class="altColor">
 173 <td class="colOne"><code><span class="memberNameLink"><a href="../../../compbio/ws/server/JronnWS.html#JronnWS--">JronnWS</a></span>()</code>&nbsp;</td>
 174 </tr>
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 185 <caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
 186 <tr>
 187 <th class="colFirst" scope="col">Modifier and Type</th>
 188 <th class="colLast" scope="col">Method and Description</th>
 189 </tr>
 190 <tr id="i0" class="altColor">
 191 <td class="colFirst"><code><a href="../../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</a></code></td>
 192 <td class="colLast"><code><span class="memberNameLink"><a href="../../../compbio/ws/server/JronnWS.html#pullExecStatistics-java.lang.String-long-">pullExecStatistics</a></span>(java.lang.String&nbsp;jobId,
 193                   long&nbsp;position)</code>
 194 <div class="block">Assume statistics is not supported</div>
 195 </td>
 196 </tr>
 197 </table>
 198 <ul class="blockList">
 199 <li class="blockList"><a name="methods.inherited.from.class.compbio.ws.server.SequenceAnnotationService">
 200 <!--   -->
 201 </a>
 202 <h3>Methods inherited from class&nbsp;compbio.ws.server.<a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server">SequenceAnnotationService</a></h3>
 203 <code><a href="../../../compbio/ws/server/SequenceAnnotationService.html#analize-java.util.List-">analize</a>, <a href="../../../compbio/ws/server/SequenceAnnotationService.html#customAnalize-java.util.List-java.util.List-">customAnalize</a>, <a href="../../../compbio/ws/server/SequenceAnnotationService.html#getAnnotation-java.lang.String-">getAnnotation</a>, <a href="../../../compbio/ws/server/SequenceAnnotationService.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></code></li>
 204 </ul>
 205 <ul class="blockList">
 206 <li class="blockList"><a name="methods.inherited.from.class.compbio.ws.server.GenericMetadataService">
 207 <!--   -->
 208 </a>
 209 <h3>Methods inherited from class&nbsp;compbio.ws.server.<a href="../../../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</a></h3>
 210 <code><a href="../../../compbio/ws/server/GenericMetadataService.html#cancelJob-java.lang.String-">cancelJob</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#getJobStatus-java.lang.String-">getJobStatus</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#getLimit-java.lang.String-">getLimit</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#getLimits--">getLimits</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#getPresets--">getPresets</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#getRunnerOptions--">getRunnerOptions</a>, <a href="../../../compbio/ws/server/GenericMetadataService.html#init-java.util.List-">init</a></code></li>
 211 </ul>
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 214 <!--   -->
 215 </a>
 216 <h3>Methods inherited from class&nbsp;java.lang.Object</h3>
 217 <code>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
 218 </ul>
 219 <ul class="blockList">
 220 <li class="blockList"><a name="methods.inherited.from.class.compbio.data.msa.SequenceAnnotation">
 221 <!--   -->
 222 </a>
 223 <h3>Methods inherited from interface&nbsp;compbio.data.msa.<a href="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a></h3>
 224 <code><a href="../../../compbio/data/msa/SequenceAnnotation.html#analize-java.util.List-">analize</a>, <a href="../../../compbio/data/msa/SequenceAnnotation.html#customAnalize-java.util.List-java.util.List-">customAnalize</a>, <a href="../../../compbio/data/msa/SequenceAnnotation.html#getAnnotation-java.lang.String-">getAnnotation</a>, <a href="../../../compbio/data/msa/SequenceAnnotation.html#presetAnalize-java.util.List-compbio.metadata.Preset-">presetAnalize</a></code></li>
 225 </ul>
 226 <ul class="blockList">
 227 <li class="blockList"><a name="methods.inherited.from.class.compbio.data.msa.JManagement">
 228 <!--   -->
 229 </a>
 230 <h3>Methods inherited from interface&nbsp;compbio.data.msa.<a href="../../../compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a></h3>
 231 <code><a href="../../../compbio/data/msa/JManagement.html#cancelJob-java.lang.String-">cancelJob</a>, <a href="../../../compbio/data/msa/JManagement.html#getJobStatus-java.lang.String-">getJobStatus</a></code></li>
 232 </ul>
 233 <ul class="blockList">
 234 <li class="blockList"><a name="methods.inherited.from.class.compbio.data.msa.Metadata">
 235 <!--   -->
 236 </a>
 237 <h3>Methods inherited from interface&nbsp;compbio.data.msa.<a href="../../../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a></h3>
 238 <code><a href="../../../compbio/data/msa/Metadata.html#getLimit-java.lang.String-">getLimit</a>, <a href="../../../compbio/data/msa/Metadata.html#getLimits--">getLimits</a>, <a href="../../../compbio/data/msa/Metadata.html#getPresets--">getPresets</a>, <a href="../../../compbio/data/msa/Metadata.html#getRunnerOptions--">getRunnerOptions</a></code></li>
 239 </ul>
 240 </li>
 241 </ul>
 242 </li>
 243 </ul>
 244 </div>
 245 <div class="details">
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 247 <li class="blockList">
 248 <!-- ============ FIELD DETAIL =========== -->
 249 <ul class="blockList">
 250 <li class="blockList"><a name="field.detail">
 251 <!--   -->
 252 </a>
 253 <h3>Field Detail</h3>
 254 <a name="log">
 255 <!--   -->
 256 </a>
 257 <ul class="blockListLast">
 258 <li class="blockList">
 259 <h4>log</h4>
 260 <pre>private static&nbsp;org.apache.log4j.Logger log</pre>
 261 </li>
 262 </ul>
 263 </li>
 264 </ul>
 265 <!-- ========= CONSTRUCTOR DETAIL ======== -->
 266 <ul class="blockList">
 267 <li class="blockList"><a name="constructor.detail">
 268 <!--   -->
 269 </a>
 270 <h3>Constructor Detail</h3>
 271 <a name="JronnWS--">
 272 <!--   -->
 273 </a>
 274 <ul class="blockListLast">
 275 <li class="blockList">
 276 <h4>JronnWS</h4>
 277 <pre>public&nbsp;JronnWS()</pre>
 278 </li>
 279 </ul>
 280 </li>
 281 </ul>
 282 <!-- ============ METHOD DETAIL ========== -->
 283 <ul class="blockList">
 284 <li class="blockList"><a name="method.detail">
 285 <!--   -->
 286 </a>
 287 <h3>Method Detail</h3>
 288 <a name="pullExecStatistics-java.lang.String-long-">
 289 <!--   -->
 290 </a>
 291 <ul class="blockListLast">
 292 <li class="blockList">
 293 <h4>pullExecStatistics</h4>
 294 <pre>public&nbsp;<a href="../../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</a>&nbsp;pullExecStatistics(java.lang.String&nbsp;jobId,
 295                                       long&nbsp;position)</pre>
 296 <div class="block"><span class="descfrmTypeLabel">Description copied from class:&nbsp;<code><a href="../../../compbio/ws/server/GenericMetadataService.html#pullExecStatistics-java.lang.String-long-">GenericMetadataService</a></code></span></div>
 297 <div class="block">Assume statistics is not supported</div>
 298 <dl>
 299 <dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
 300 <dd><code><a href="../../../compbio/data/msa/JManagement.html#pullExecStatistics-java.lang.String-long-">pullExecStatistics</a></code>&nbsp;in interface&nbsp;<code><a href="../../../compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a></code></dd>
 301 <dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
 302 <dd><code><a href="../../../compbio/ws/server/GenericMetadataService.html#pullExecStatistics-java.lang.String-long-">pullExecStatistics</a></code>&nbsp;in class&nbsp;<code><a href="../../../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</a></code></dd>
 303 <dt><span class="paramLabel">Parameters:</span></dt>
 304 <dd><code>jobId</code> - - unique job identifier</dd>
 305 <dd><code>position</code> - - next position within the file to read</dd>
 306 <dt><span class="returnLabel">Returns:</span></dt>
 307 <dd>ChunkHolder</dd>
 308 <dt><span class="seeLabel">See Also:</span></dt>
 309 <dd><a href="../../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata"><code>ChunkHolder</code></a></dd>
 310 </dl>
 311 </li>
 312 </ul>
 313 </li>
 314 </ul>
 315 </li>
 316 </ul>
 317 </div>
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 329 <li><a href="../../../overview-summary.html">Overview</a></li>
 330 <li><a href="package-summary.html">Package</a></li>
 331 <li class="navBarCell1Rev">Class</li>
 332 <li><a href="class-use/JronnWS.html">Use</a></li>
 333 <li><a href="package-tree.html">Tree</a></li>
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 335 <li><a href="../../../index-files/index-1.html">Index</a></li>
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 337 </ul>
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 340 <ul class="navList">
 341 <li><a href="../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server"><span class="typeNameLink">Prev&nbsp;Class</span></a></li>
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