JWS-109 & JWS-116 Regenerated the JABAWS JavaDoc (with eclipse java 8) and moved...
[jabaws.git] / website / docs / full_javadoc / compbio / ws / server / package-summary.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
2 <!-- NewPage -->
3 <html lang="en">
4 <head>
5 <!-- Generated by javadoc (1.8.0_121) on Fri Apr 21 15:32:50 BST 2017 -->
6 <title>compbio.ws.server</title>
7 <meta name="date" content="2017-04-21">
8 <link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
9 <script type="text/javascript" src="../../../script.js"></script>
10 </head>
11 <body>
12 <script type="text/javascript"><!--
13     try {
14         if (location.href.indexOf('is-external=true') == -1) {
15             parent.document.title="compbio.ws.server";
16         }
17     }
18     catch(err) {
19     }
20 //-->
21 </script>
22 <noscript>
23 <div>JavaScript is disabled on your browser.</div>
24 </noscript>
25 <!-- ========= START OF TOP NAVBAR ======= -->
26 <div class="topNav"><a name="navbar.top">
27 <!--   -->
28 </a>
29 <div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
30 <a name="navbar.top.firstrow">
31 <!--   -->
32 </a>
33 <ul class="navList" title="Navigation">
34 <li><a href="../../../overview-summary.html">Overview</a></li>
35 <li class="navBarCell1Rev">Package</li>
36 <li>Class</li>
37 <li><a href="package-use.html">Use</a></li>
38 <li><a href="package-tree.html">Tree</a></li>
39 <li><a href="../../../deprecated-list.html">Deprecated</a></li>
40 <li><a href="../../../index-files/index-1.html">Index</a></li>
41 <li><a href="../../../help-doc.html">Help</a></li>
42 </ul>
43 </div>
44 <div class="subNav">
45 <ul class="navList">
46 <li><a href="../../../compbio/ws/client/package-summary.html">Prev&nbsp;Package</a></li>
47 <li>Next&nbsp;Package</li>
48 </ul>
49 <ul class="navList">
50 <li><a href="../../../index.html?compbio/ws/server/package-summary.html" target="_top">Frames</a></li>
51 <li><a href="package-summary.html" target="_top">No&nbsp;Frames</a></li>
52 </ul>
53 <ul class="navList" id="allclasses_navbar_top">
54 <li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
55 </ul>
56 <div>
57 <script type="text/javascript"><!--
58   allClassesLink = document.getElementById("allclasses_navbar_top");
59   if(window==top) {
60     allClassesLink.style.display = "block";
61   }
62   else {
63     allClassesLink.style.display = "none";
64   }
65   //-->
66 </script>
67 </div>
68 <a name="skip.navbar.top">
69 <!--   -->
70 </a></div>
71 <!-- ========= END OF TOP NAVBAR ========= -->
72 <div class="header">
73 <h1 title="Package" class="title">Package&nbsp;compbio.ws.server</h1>
74 </div>
75 <div class="contentContainer">
76 <ul class="blockList">
77 <li class="blockList">
78 <table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
79 <caption><span>Class Summary</span><span class="tabEnd">&nbsp;</span></caption>
80 <tr>
81 <th class="colFirst" scope="col">Class</th>
82 <th class="colLast" scope="col">Description</th>
83 </tr>
84 <tbody>
85 <tr class="altColor">
86 <td class="colFirst"><a href="../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a></td>
87 <td class="colLast">&nbsp;</td>
88 </tr>
89 <tr class="rowColor">
90 <td class="colFirst"><a href="../../../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</a></td>
91 <td class="colLast">&nbsp;</td>
92 </tr>
93 <tr class="altColor">
94 <td class="colFirst"><a href="../../../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</a></td>
95 <td class="colLast">&nbsp;</td>
96 </tr>
97 <tr class="rowColor">
98 <td class="colFirst"><a href="../../../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</a></td>
99 <td class="colLast">&nbsp;</td>
100 </tr>
101 <tr class="altColor">
102 <td class="colFirst"><a href="../../../compbio/ws/server/GAUtils.html" title="class in compbio.ws.server">GAUtils</a></td>
103 <td class="colLast">&nbsp;</td>
104 </tr>
105 <tr class="rowColor">
106 <td class="colFirst"><a href="../../../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</a>&lt;T&gt;</td>
107 <td class="colLast">&nbsp;</td>
108 </tr>
109 <tr class="altColor">
110 <td class="colFirst"><a href="../../../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</a></td>
111 <td class="colLast">&nbsp;</td>
112 </tr>
113 <tr class="rowColor">
114 <td class="colFirst"><a href="../../../compbio/ws/server/GLprobsWS.html" title="class in compbio.ws.server">GLprobsWS</a></td>
115 <td class="colLast">&nbsp;</td>
116 </tr>
117 <tr class="altColor">
118 <td class="colFirst"><a href="../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</a></td>
119 <td class="colLast">&nbsp;</td>
120 </tr>
121 <tr class="rowColor">
122 <td class="colFirst"><a href="../../../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</a></td>
123 <td class="colLast">&nbsp;</td>
124 </tr>
125 <tr class="altColor">
126 <td class="colFirst"><a href="../../../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</a></td>
127 <td class="colLast">&nbsp;</td>
128 </tr>
129 <tr class="rowColor">
130 <td class="colFirst"><a href="../../../compbio/ws/server/MainManager.html" title="class in compbio.ws.server">MainManager</a></td>
131 <td class="colLast">
132 <div class="block">Two tasks:
133  1.</div>
134 </td>
135 </tr>
136 <tr class="altColor">
137 <td class="colFirst"><a href="../../../compbio/ws/server/MSAprobsWS.html" title="class in compbio.ws.server">MSAprobsWS</a></td>
138 <td class="colLast">&nbsp;</td>
139 </tr>
140 <tr class="rowColor">
141 <td class="colFirst"><a href="../../../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</a></td>
142 <td class="colLast">&nbsp;</td>
143 </tr>
144 <tr class="altColor">
145 <td class="colFirst"><a href="../../../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</a></td>
146 <td class="colLast">&nbsp;</td>
147 </tr>
148 <tr class="rowColor">
149 <td class="colFirst"><a href="../../../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></td>
150 <td class="colLast">
151 <div class="block">JABAWS services registry</div>
152 </td>
153 </tr>
154 <tr class="altColor">
155 <td class="colFirst"><a href="../../../compbio/ws/server/RNAalifoldWS.html" title="class in compbio.ws.server">RNAalifoldWS</a></td>
156 <td class="colLast">&nbsp;</td>
157 </tr>
158 <tr class="rowColor">
159 <td class="colFirst"><a href="../../../compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server">SequenceAnnotationService</a>&lt;T&gt;</td>
160 <td class="colLast">
161 <div class="block">Common methods for all SequenceAnnotation web services</div>
162 </td>
163 </tr>
164 <tr class="altColor">
165 <td class="colFirst"><a href="../../../compbio/ws/server/SetExecutableFlag.html" title="class in compbio.ws.server">SetExecutableFlag</a></td>
166 <td class="colLast">
167 <div class="block">Run setexecflag.sh script if executable flag is not set</div>
168 </td>
169 </tr>
170 <tr class="rowColor">
171 <td class="colFirst"><a href="../../../compbio/ws/server/SimpleWSPublisher.html" title="class in compbio.ws.server">SimpleWSPublisher</a></td>
172 <td class="colLast">Deprecated</td>
173 </tr>
174 <tr class="altColor">
175 <td class="colFirst"><a href="../../../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></td>
176 <td class="colLast">&nbsp;</td>
177 </tr>
178 <tr class="rowColor">
179 <td class="colFirst"><a href="../../../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</a></td>
180 <td class="colLast">&nbsp;</td>
181 </tr>
182 </tbody>
183 </table>
184 </li>
185 </ul>
186 </div>
187 <!-- ======= START OF BOTTOM NAVBAR ====== -->
188 <div class="bottomNav"><a name="navbar.bottom">
189 <!--   -->
190 </a>
191 <div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
192 <a name="navbar.bottom.firstrow">
193 <!--   -->
194 </a>
195 <ul class="navList" title="Navigation">
196 <li><a href="../../../overview-summary.html">Overview</a></li>
197 <li class="navBarCell1Rev">Package</li>
198 <li>Class</li>
199 <li><a href="package-use.html">Use</a></li>
200 <li><a href="package-tree.html">Tree</a></li>
201 <li><a href="../../../deprecated-list.html">Deprecated</a></li>
202 <li><a href="../../../index-files/index-1.html">Index</a></li>
203 <li><a href="../../../help-doc.html">Help</a></li>
204 </ul>
205 </div>
206 <div class="subNav">
207 <ul class="navList">
208 <li><a href="../../../compbio/ws/client/package-summary.html">Prev&nbsp;Package</a></li>
209 <li>Next&nbsp;Package</li>
210 </ul>
211 <ul class="navList">
212 <li><a href="../../../index.html?compbio/ws/server/package-summary.html" target="_top">Frames</a></li>
213 <li><a href="package-summary.html" target="_top">No&nbsp;Frames</a></li>
214 </ul>
215 <ul class="navList" id="allclasses_navbar_bottom">
216 <li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
217 </ul>
218 <div>
219 <script type="text/javascript"><!--
220   allClassesLink = document.getElementById("allclasses_navbar_bottom");
221   if(window==top) {
222     allClassesLink.style.display = "block";
223   }
224   else {
225     allClassesLink.style.display = "none";
226   }
227   //-->
228 </script>
229 </div>
230 <a name="skip.navbar.bottom">
231 <!--   -->
232 </a></div>
233 <!-- ======== END OF BOTTOM NAVBAR ======= -->
234 </body>
235 </html>