updated javadoc
[jabaws.git] / website / full_javadoc / compbio / data / _structure / JpredResult.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
6 <TITLE>\r
7 JpredResult\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="JpredResult";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/JpredResult.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="../../../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure"><B>PREV CLASS</B></A>&nbsp;\r
59 &nbsp;NEXT CLASS</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/data/_structure/JpredResult.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="JpredResult.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 <TR>\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#methods_inherited_from_class_java.lang.Object">METHOD</A></FONT></TD>\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;METHOD</FONT></TD>\r
82 </TR>\r
83 </TABLE>\r
84 <A NAME="skip-navbar_top"></A>\r
85 <!-- ========= END OF TOP NAVBAR ========= -->\r
86 \r
87 <HR>\r
88 <!-- ======== START OF CLASS DATA ======== -->\r
89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.data._structure</FONT>\r
92 <BR>\r
93 Class JpredResult</H2>\r
94 <PRE>\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data._structure.JpredResult</B>\r
97 </PRE>\r
98 <HR>\r
99 <DL>\r
100 <DT><PRE>public class <B>JpredResult</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
101 </PRE>\r
102 \r
103 <P>\r
104 Jnet result
105  
106  jnetpred:-,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-,
107  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H
108  ,H,H,-,-,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,-,-,-,-,H,H,H,H,
109  -,-,-,-,-,-,-,-,-,-,-,-,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-
110  , JNETCONF:7,3,7,9,9,9,9,9,9,9,7,5,2,6,6,3,6,7,5,1,0,5,3,3,6,4,6,6,7,7,7,7,7,
111  7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,6,3,6,8,9,9,9,9,9,9,9
112  7,3,7,7,6,2,4,4,1,5,7,8,7,7,7,7,7,7,7,6,5,3,5,6,6,6,4,0,0,2,1,3,5,7,7,7,7,7,7
113  , JNETSOL25:B,B,-,-,-,B,-,B,-,B,B,B,-,-,-,B,-,B,-,-,-,-,-,B,-,B,-,-,-,-,-,-,
114  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,B,-,B,-
115  , B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,B,-,-,-,-,B,-,-,B,B,-,-
116  ,B,
117  JNETSOL5:-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,B,B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,-
118  ,-,-
119  JNETSOL0:-,-,-,-,-,-,B,-,-,B,-,B,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,
120  -,-,- ,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,-,B,-,-,
121  JNETHMM:-,H,H,H,H,H,H,H,H,H,H,
122  H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-,-,
123  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-
124  ,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,
125  JNETPROPH:0.0110,0.1125,0.8552,0.0107
126  ,0.6245,0.3614,0.0120,0.8702,0.1238,0.0120
127  ,0.0193,0.9284,0.0708,0.0278,0.8703,0.1244
128  ,0.1591,0.7399,0.1456,0.2488,0.5824,0.1017,
129  JNETPROPE:0.0107,0.6245,0.3614,0.0120
130  ,0.8702,0.1238,0.0120,0.9335,0.0656,0.0102
131  ,0.9586,0.0465,0.0094,0.9662,0.0433,
132  ,0.1525,0.7103,0.1088,0.1181,0.7425,0.1784,\r
133 <P>\r
134 \r
135 <P>\r
136 <DL>\r
137 <DT><B>Author:</B></DT>\r
138   <DD>pvtroshin</DD>\r
139 </DL>\r
140 <HR>\r
141 \r
142 <P>\r
143 \r
144 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
145 \r
146 <A NAME="constructor_summary"><!-- --></A>\r
147 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
148 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
149 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
150 <B>Constructor Summary</B></FONT></TH>\r
151 </TR>\r
152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
153 <TD><CODE><B><A HREF="../../../compbio/data/_structure/JpredResult.html#JpredResult()">JpredResult</A></B>()</CODE>\r
154 \r
155 <BR>\r
156 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
157 </TR>\r
158 </TABLE>\r
159 &nbsp;\r
160 <!-- ========== METHOD SUMMARY =========== -->\r
161 \r
162 <A NAME="method_summary"><!-- --></A>\r
163 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
164 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
165 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
166 <B>Method Summary</B></FONT></TH>\r
167 </TR>\r
168 </TABLE>\r
169 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
170 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
171 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
172 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
173 </TR>\r
174 <TR BGCOLOR="white" CLASS="TableRowColor">\r
175 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
176 </TR>\r
177 </TABLE>\r
178 &nbsp;\r
179 <P>\r
180 \r
181 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
182 \r
183 <A NAME="constructor_detail"><!-- --></A>\r
184 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
185 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
186 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
187 <B>Constructor Detail</B></FONT></TH>\r
188 </TR>\r
189 </TABLE>\r
190 \r
191 <A NAME="JpredResult()"><!-- --></A><H3>\r
192 JpredResult</H3>\r
193 <PRE>\r
194 public <B>JpredResult</B>()</PRE>\r
195 <DL>\r
196 </DL>\r
197 <!-- ========= END OF CLASS DATA ========= -->\r
198 <HR>\r
199 \r
200 \r
201 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
202 <A NAME="navbar_bottom"><!-- --></A>\r
203 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
204 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
205 <TR>\r
206 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
207 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
208 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
209   <TR ALIGN="center" VALIGN="top">\r
210   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
211   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
212   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
213   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/JpredResult.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
214   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
215   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
216   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
217   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
218   </TR>\r
219 </TABLE>\r
220 </TD>\r
221 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
222 </EM>\r
223 </TD>\r
224 </TR>\r
225 \r
226 <TR>\r
227 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
228 &nbsp;<A HREF="../../../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure"><B>PREV CLASS</B></A>&nbsp;\r
229 &nbsp;NEXT CLASS</FONT></TD>\r
230 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
231   <A HREF="../../../index.html?compbio/data/_structure/JpredResult.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
232 &nbsp;<A HREF="JpredResult.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
233 &nbsp;<SCRIPT type="text/javascript">\r
234   <!--\r
235   if(window==top) {\r
236     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
237   }\r
238   //-->\r
239 </SCRIPT>\r
240 <NOSCRIPT>\r
241   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
242 </NOSCRIPT>\r
243 \r
244 \r
245 </FONT></TD>\r
246 </TR>\r
247 <TR>\r
248 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
249   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#methods_inherited_from_class_java.lang.Object">METHOD</A></FONT></TD>\r
250 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
251 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;METHOD</FONT></TD>\r
252 </TR>\r
253 </TABLE>\r
254 <A NAME="skip-navbar_bottom"></A>\r
255 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
256 \r
257 <HR>\r
258 \r
259 </BODY>\r
260 </HTML>\r