website/full_javadoc/compbio/data/msa/Metadata.html

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   7 Metadata\r
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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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  91 compbio.data.msa</FONT>\r
  92 <BR>\r
  93 Interface Metadata&lt;T&gt;</H2>\r
  94 <DL>\r
  95 <DT><B>All Known Subinterfaces:</B> <DD><A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</A>&lt;T&gt;, <A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A>&lt;T&gt;</DD>\r
  96 </DL>\r
  97 <DL>\r
  98 <DT><B>All Known Implementing Classes:</B> <DD><A HREF="../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</A>, <A HREF="../../../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</A>, <A HREF="../../../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</A>, <A HREF="../../../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</A>, <A HREF="../../../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</A>, <A HREF="../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</A>, <A HREF="../../../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</A>, <A HREF="../../../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</A>, <A HREF="../../../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</A>, <A HREF="../../../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</A>, <A HREF="../../../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</A></DD>\r
  99 </DL>\r
 100 <HR>\r
 101 <DL>\r
 102 <DT><PRE>public interface <B>Metadata&lt;T&gt;</B></DL>\r
 103 </PRE>\r
 104 \r
 105 <P>\r
 106 <HR>\r
 107 \r
 108 <P>\r
 109 \r
 110 <!-- ========== METHOD SUMMARY =========== -->\r
 111 \r
 112 <A NAME="method_summary"><!-- --></A>\r
 113 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 114 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 115 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 116 <B>Method Summary</B></FONT></TH>\r
 117 </TR>\r
 118 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 119 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 120 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
 121 <TD><CODE><B><A HREF="../../../compbio/data/msa/Metadata.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
 122 \r
 123 <BR>\r
 124 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Get a Limit for a preset.</TD>\r
 125 </TR>\r
 126 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 127 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 128 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
 129 <TD><CODE><B><A HREF="../../../compbio/data/msa/Metadata.html#getLimits()">getLimits</A></B>()</CODE>\r
 130 \r
 131 <BR>\r
 132 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;List Limits supported by a web service.</TD>\r
 133 </TR>\r
 134 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 135 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 136 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
 137 <TD><CODE><B><A HREF="../../../compbio/data/msa/Metadata.html#getPresets()">getPresets</A></B>()</CODE>\r
 138 \r
 139 <BR>\r
 140 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Get presets supported by a web service</TD>\r
 141 </TR>\r
 142 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 143 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 144 <CODE>&nbsp;<A HREF="../../../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
 145 <TD><CODE><B><A HREF="../../../compbio/data/msa/Metadata.html#getRunnerOptions()">getRunnerOptions</A></B>()</CODE>\r
 146 \r
 147 <BR>\r
 148 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Get options supported by a web service</TD>\r
 149 </TR>\r
 150 </TABLE>\r
 151 &nbsp;\r
 152 <P>\r
 153 \r
 154 <!-- ============ METHOD DETAIL ========== -->\r
 155 \r
 156 <A NAME="method_detail"><!-- --></A>\r
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 158 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 159 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 160 <B>Method Detail</B></FONT></TH>\r
 161 </TR>\r
 162 </TABLE>\r
 163 \r
 164 <A NAME="getRunnerOptions()"><!-- --></A><H3>\r
 165 getRunnerOptions</H3>\r
 166 <PRE>\r
 167 <A HREF="../../../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt; <B>getRunnerOptions</B>()</PRE>\r
 168 <DL>\r
 169 <DD>Get options supported by a web service\r
 170 <P>\r
 171 <DD><DL>\r
 172 \r
 173 <DT><B>Returns:</B><DD>RunnerConfig the list of options and parameters supported by a
 174          web service.</DL>\r
 175 </DD>\r
 176 </DL>\r
 177 <HR>\r
 178 \r
 179 <A NAME="getPresets()"><!-- --></A><H3>\r
 180 getPresets</H3>\r
 181 <PRE>\r
 182 <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt; <B>getPresets</B>()</PRE>\r
 183 <DL>\r
 184 <DD>Get presets supported by a web service\r
 185 <P>\r
 186 <DD><DL>\r
 187 \r
 188 <DT><B>Returns:</B><DD>PresetManager the object contains information about presets
 189          supported by a web service</DL>\r
 190 </DD>\r
 191 </DL>\r
 192 <HR>\r
 193 \r
 194 <A NAME="getLimit(java.lang.String)"><!-- --></A><H3>\r
 195 getLimit</H3>\r
 196 <PRE>\r
 197 <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt; <B>getLimit</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</PRE>\r
 198 <DL>\r
 199 <DD>Get a Limit for a preset.\r
 200 <P>\r
 201 <DD><DL>\r
 202 <DT><B>Parameters:</B><DD><CODE>presetName</CODE> - the name of the preset. if no name is provided, then the
 203             default preset is returned. If no limit for a particular
 204             preset is defined then the default preset is returned\r
 205 <DT><B>Returns:</B><DD>Limit</DL>\r
 206 </DD>\r
 207 </DL>\r
 208 <HR>\r
 209 \r
 210 <A NAME="getLimits()"><!-- --></A><H3>\r
 211 getLimits</H3>\r
 212 <PRE>\r
 213 <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt; <B>getLimits</B>()</PRE>\r
 214 <DL>\r
 215 <DD>List Limits supported by a web service.\r
 216 <P>\r
 217 <DD><DL>\r
 218 \r
 219 <DT><B>Returns:</B><DD>LimitManager</DL>\r
 220 </DD>\r
 221 </DL>\r
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