website/full_javadoc/compbio/data/msa/class-use/JABAService.html

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   7 Uses of Interface compbio.data.msa.JABAService\r
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  84 <B>Uses of Interface<br>compbio.data.msa.JABAService</B></H2>\r
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  86 \r
  87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  90 Packages that use <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></FONT></TH>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
  94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD><A HREF="#compbio.ws.client"><B>compbio.ws.client</B></A></TD>\r
  98 <TD>A command line client and web services testing client for
  99  JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
 100 </TR>\r
 101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 102 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
 103 <TD>&nbsp;&nbsp;</TD>\r
 104 </TR>\r
 105 </TABLE>\r
 106 &nbsp;\r
 107 <P>\r
 108 <A NAME="compbio.data.msa"><!-- --></A>\r
 109 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 110 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 111 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 112 Uses of <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A> in <A HREF="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
 113 </TR>\r
 114 </TABLE>\r
 115 &nbsp;\r
 116 <P>\r
 117 \r
 118 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 119 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 120 <TH ALIGN="left" COLSPAN="2">Subinterfaces of <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A> in <A HREF="../../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
 121 </TR>\r
 122 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 123 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 124 <CODE>&nbsp;interface</CODE></FONT></TD>\r
 125 <TD><CODE><B><A HREF="../../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS&lt;T&gt;</A></B></CODE>\r
 126 \r
 127 <BR>\r
 128 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Multiple Sequence Alignment (MSA) Web Services Interface</TD>\r
 129 </TR>\r
 130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 131 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 132 <CODE>&nbsp;interface</CODE></FONT></TD>\r
 133 <TD><CODE><B><A HREF="../../../../compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa">RegistryWS</A></B></CODE>\r
 134 \r
 135 <BR>\r
 136 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;JABAWS services registry</TD>\r
 137 </TR>\r
 138 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 139 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 140 <CODE>&nbsp;interface</CODE></FONT></TD>\r
 141 <TD><CODE><B><A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation&lt;T&gt;</A></B></CODE>\r
 142 \r
 143 <BR>\r
 144 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Interface for tools that results to one or more annotation to sequence(s)
 145
 146  Single, multiple sequences their groups or alignments can be annotated</TD>\r
 147 </TR>\r
 148 </TABLE>\r
 149 &nbsp;\r
 150 <P>\r
 151 <A NAME="compbio.ws.client"><!-- --></A>\r
 152 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 153 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 154 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 155 Uses of <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A> in <A HREF="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</A></FONT></TH>\r
 156 </TR>\r
 157 </TABLE>\r
 158 &nbsp;\r
 159 <P>\r
 160 \r
 161 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 162 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 163 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</A> that return <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></FONT></TH>\r
 164 </TR>\r
 165 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 166 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 167 <CODE>static&nbsp;<A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></CODE></FONT></TD>\r
 168 <TD><CODE><B>Jws2Client.</B><B><A HREF="../../../../compbio/ws/client/Jws2Client.html#connect(java.lang.String, compbio.ws.client.Services)">connect</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;host,\r
 169         <A HREF="../../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
 170 \r
 171 <BR>\r
 172 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Connects to a web service by the host and the service name web service
 173  type</TD>\r
 174 </TR>\r
 175 </TABLE>\r
 176 &nbsp;\r
 177 <P>\r
 178 <A NAME="compbio.ws.server"><!-- --></A>\r
 179 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 180 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 181 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 182 Uses of <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A> in <A HREF="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
 183 </TR>\r
 184 </TABLE>\r
 185 &nbsp;\r
 186 <P>\r
 187 \r
 188 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 189 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 190 <TH ALIGN="left" COLSPAN="2">Classes in <A HREF="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that implement <A HREF="../../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></FONT></TH>\r
 191 </TR>\r
 192 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 193 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 194 <CODE>&nbsp;class</CODE></FONT></TD>\r
 195 <TD><CODE><B><A HREF="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</A></B></CODE>\r
 196 \r
 197 <BR>\r
 198 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 199 </TR>\r
 200 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 201 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 202 <CODE>&nbsp;class</CODE></FONT></TD>\r
 203 <TD><CODE><B><A HREF="../../../../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</A></B></CODE>\r
 204 \r
 205 <BR>\r
 206 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 207 </TR>\r
 208 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 209 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 210 <CODE>&nbsp;class</CODE></FONT></TD>\r
 211 <TD><CODE><B><A HREF="../../../../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</A></B></CODE>\r
 212 \r
 213 <BR>\r
 214 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 215 </TR>\r
 216 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 217 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 218 <CODE>&nbsp;class</CODE></FONT></TD>\r
 219 <TD><CODE><B><A HREF="../../../../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</A></B></CODE>\r
 220 \r
 221 <BR>\r
 222 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 223 </TR>\r
 224 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 225 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 226 <CODE>&nbsp;class</CODE></FONT></TD>\r
 227 <TD><CODE><B><A HREF="../../../../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</A></B></CODE>\r
 228 \r
 229 <BR>\r
 230 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 231 </TR>\r
 232 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 233 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 234 <CODE>&nbsp;class</CODE></FONT></TD>\r
 235 <TD><CODE><B><A HREF="../../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</A></B></CODE>\r
 236 \r
 237 <BR>\r
 238 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 239 </TR>\r
 240 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 241 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 242 <CODE>&nbsp;class</CODE></FONT></TD>\r
 243 <TD><CODE><B><A HREF="../../../../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</A></B></CODE>\r
 244 \r
 245 <BR>\r
 246 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 247 </TR>\r
 248 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 249 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 250 <CODE>&nbsp;class</CODE></FONT></TD>\r
 251 <TD><CODE><B><A HREF="../../../../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</A></B></CODE>\r
 252 \r
 253 <BR>\r
 254 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 255 </TR>\r
 256 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 257 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 258 <CODE>&nbsp;class</CODE></FONT></TD>\r
 259 <TD><CODE><B><A HREF="../../../../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</A></B></CODE>\r
 260 \r
 261 <BR>\r
 262 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 263 </TR>\r
 264 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 265 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 266 <CODE>&nbsp;class</CODE></FONT></TD>\r
 267 <TD><CODE><B><A HREF="../../../../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</A></B></CODE>\r
 268 \r
 269 <BR>\r
 270 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 271 </TR>\r
 272 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 273 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 274 <CODE>&nbsp;class</CODE></FONT></TD>\r
 275 <TD><CODE><B><A HREF="../../../../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</A></B></CODE>\r
 276 \r
 277 <BR>\r
 278 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;JABAWS services registry</TD>\r
 279 </TR>\r
 280 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 281 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 282 <CODE>&nbsp;class</CODE></FONT></TD>\r
 283 <TD><CODE><B><A HREF="../../../../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</A></B></CODE>\r
 284 \r
 285 <BR>\r
 286 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 287 </TR>\r
 288 </TABLE>\r
 289 &nbsp;\r
 290 <P>\r
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