updated javadoc
[jabaws.git] / website / full_javadoc / compbio / data / msa / class-use / SequenceAnnotation.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
6 <TITLE>\r
7 Uses of Interface compbio.data.msa.SequenceAnnotation\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="Uses of Interface compbio.data.msa.SequenceAnnotation";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
43   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;PREV&nbsp;\r
59 &nbsp;NEXT</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../../index.html?compbio/data/msa/\class-useSequenceAnnotation.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="SequenceAnnotation.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <CENTER>\r
83 <H2>\r
84 <B>Uses of Interface<br>compbio.data.msa.SequenceAnnotation</B></H2>\r
85 </CENTER>\r
86 \r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
90 Packages that use <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A></FONT></TH>\r
91 </TR>\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
93 <TD><A HREF="#compbio.ws.client"><B>compbio.ws.client</B></A></TD>\r
94 <TD>A command line client and web services testing client for    
95  JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
96 </TR>\r
97 <TR BGCOLOR="white" CLASS="TableRowColor">\r
98 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
99 <TD>&nbsp;&nbsp;</TD>\r
100 </TR>\r
101 </TABLE>\r
102 &nbsp;\r
103 <P>\r
104 <A NAME="compbio.ws.client"><!-- --></A>\r
105 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
106 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
107 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
108 Uses of <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A> in <A HREF="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</A></FONT></TH>\r
109 </TR>\r
110 </TABLE>\r
111 &nbsp;\r
112 <P>\r
113 \r
114 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
115 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
116 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/ws/client/package-summary.html">compbio.ws.client</A> that return <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A></FONT></TH>\r
117 </TR>\r
118 <TR BGCOLOR="white" CLASS="TableRowColor">\r
119 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
120 <CODE>static&nbsp;<A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A>&lt;<A HREF="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</A>&gt;</CODE></FONT></TD>\r
121 <TD><CODE><B>AAConClient.</B><B><A HREF="../../../../compbio/ws/client/AAConClient.html#connect()">connect</A></B>()</CODE>\r
122 \r
123 <BR>\r
124 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Connects to a AACon web service by the host and the service name</TD>\r
125 </TR>\r
126 </TABLE>\r
127 &nbsp;\r
128 <P>\r
129 <A NAME="compbio.ws.server"><!-- --></A>\r
130 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
131 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
132 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
133 Uses of <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A> in <A HREF="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
134 </TR>\r
135 </TABLE>\r
136 &nbsp;\r
137 <P>\r
138 \r
139 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
140 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
141 <TH ALIGN="left" COLSPAN="2">Classes in <A HREF="../../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that implement <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</A></FONT></TH>\r
142 </TR>\r
143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
145 <CODE>&nbsp;class</CODE></FONT></TD>\r
146 <TD><CODE><B><A HREF="../../../../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</A></B></CODE>\r
147 \r
148 <BR>\r
149 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
150 </TR>\r
151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
152 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
153 <CODE>&nbsp;class</CODE></FONT></TD>\r
154 <TD><CODE><B><A HREF="../../../../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</A></B></CODE>\r
155 \r
156 <BR>\r
157 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
158 </TR>\r
159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
161 <CODE>&nbsp;class</CODE></FONT></TD>\r
162 <TD><CODE><B><A HREF="../../../../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</A></B></CODE>\r
163 \r
164 <BR>\r
165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
166 </TR>\r
167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
169 <CODE>&nbsp;class</CODE></FONT></TD>\r
170 <TD><CODE><B><A HREF="../../../../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</A></B></CODE>\r
171 \r
172 <BR>\r
173 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
174 </TR>\r
175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
177 <CODE>&nbsp;class</CODE></FONT></TD>\r
178 <TD><CODE><B><A HREF="../../../../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</A></B></CODE>\r
179 \r
180 <BR>\r
181 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
182 </TR>\r
183 </TABLE>\r
184 &nbsp;\r
185 <P>\r
186 <HR>\r
187 \r
188 \r
189 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
190 <A NAME="navbar_bottom"><!-- --></A>\r
191 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
192 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
193 <TR>\r
194 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
195 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
196 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
197   <TR ALIGN="center" VALIGN="top">\r
198   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
199   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
200   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
201   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
202   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
203   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
204   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
205   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
206   </TR>\r
207 </TABLE>\r
208 </TD>\r
209 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
210 </EM>\r
211 </TD>\r
212 </TR>\r
213 \r
214 <TR>\r
215 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
216 &nbsp;PREV&nbsp;\r
217 &nbsp;NEXT</FONT></TD>\r
218 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
219   <A HREF="../../../../index.html?compbio/data/msa/\class-useSequenceAnnotation.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
220 &nbsp;<A HREF="SequenceAnnotation.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
221 &nbsp;<SCRIPT type="text/javascript">\r
222   <!--\r
223   if(window==top) {\r
224     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
225   }\r
226   //-->\r
227 </SCRIPT>\r
228 <NOSCRIPT>\r
229   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
230 </NOSCRIPT>\r
231 \r
232 \r
233 </FONT></TD>\r
234 </TR>\r
235 </TABLE>\r
236 <A NAME="skip-navbar_bottom"></A>\r
237 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
238 \r
239 <HR>\r
240 \r
241 </BODY>\r
242 </HTML>\r