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  83 Package compbio.data.sequence\r
  84 </H2>\r
  85 A data model for multiple sequence alignment web services
  86  Classes in this package have no dependencies to other sources in the project.\r
  87 <P>\r
  88 <B>See:</B>\r
  89 <BR>\r
  90 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<A HREF="#package_description"><B>Description</B></A>\r
  91 <P>\r
  92 \r
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  94 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  95 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  96 <B>Class Summary</B></FONT></TH>\r
  97 </TR>\r
  98 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  99 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></B></TD>\r
 100 <TD>Multiple sequence alignment.</TD>\r
 101 </TR>\r
 102 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 103 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A></B></TD>\r
 104 <TD>Alignment metadata e.g.</TD>\r
 105 </TR>\r
 106 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 107 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A></B></TD>\r
 108 <TD>Tools to read and write clustal formated files</TD>\r
 109 </TR>\r
 110 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 111 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A></B></TD>\r
 112 <TD>A FASTA formatted sequence.</TD>\r
 113 </TR>\r
 114 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 115 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A></B></TD>\r
 116 <TD>Utility class for operations on sequences</TD>\r
 117 </TR>\r
 118 </TABLE>\r
 119 &nbsp;\r
 120 \r
 121 <P>\r
 122 \r
 123 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 124 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 125 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 126 <B>Enum Summary</B></FONT></TH>\r
 127 </TR>\r
 128 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 129 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A></B></TD>\r
 130 <TD>Programmes that can produce alignments</TD>\r
 131 </TR>\r
 132 </TABLE>\r
 133 &nbsp;\r
 134 \r
 135 <P>\r
 136 \r
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 139 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 140 <B>Exception Summary</B></FONT></TH>\r
 141 </TR>\r
 142 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 143 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">UnknownFileFormatException</A></B></TD>\r
 144 <TD>&nbsp;</TD>\r
 145 </TR>\r
 146 </TABLE>\r
 147 &nbsp;\r
 148 \r
 149 <P>\r
 150 <A NAME="package_description"><!-- --></A><H2>\r
 151 Package compbio.data.sequence Description\r
 152 </H2>\r
 153 \r
 154 <P>\r
 155 A data model for multiple sequence alignment web services
 156  Classes in this package have no dependencies to other sources in the project.
 157  They form a base layer of Jalview Web Services v2.\r
 158 <P>\r
 159 \r
 160 <P>\r
 161 <DL>\r
 162 <DT><B>Author:</B></DT>\r
 163   <DD>Petr Troshin
 164
 165         Date January 2010</DD>\r
 166 </DL>\r
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