website/full_javadoc/compbio/engine/FilePuller.html

   1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
   2 <!--NewPage-->\r
   3 <HTML>\r
   4 <HEAD>\r
   5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
   6 <TITLE>\r
   7 FilePuller\r
   8 </TITLE>\r
   9 \r
  10 <META NAME="date" CONTENT="2011-08-12">\r
  11 \r
  12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">\r
  13 \r
  14 <SCRIPT type="text/javascript">\r
  15 function windowTitle()\r
  16 {\r
  17     if (location.href.indexOf('is-external=true') == -1) {\r
  18         parent.document.title="FilePuller";\r
  19     }\r
  20 }\r
  21 </SCRIPT>\r
  22 <NOSCRIPT>\r
  23 </NOSCRIPT>\r
  24 \r
  25 </HEAD>\r
  26 \r
  27 <BODY BGCOLOR="white" onload="windowTitle();">\r
  28 <HR>\r
  29 \r
  30 \r
  31 <!-- ========= START OF TOP NAVBAR ======= -->\r
  32 <A NAME="navbar_top"><!-- --></A>\r
  33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
  34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
  35 <TR>\r
  36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
  37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
  38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
  39   <TR ALIGN="center" VALIGN="top">\r
  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
  42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
  43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/FilePuller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
  44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
  45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
  46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
  47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
  48   </TR>\r
  49 </TABLE>\r
  50 </TD>\r
  51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
  52 </EM>\r
  53 </TD>\r
  54 </TR>\r
  55 \r
  56 <TR>\r
  57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  58 &nbsp;<A HREF="../../compbio/engine/Configurator.html" title="class in compbio.engine"><B>PREV CLASS</B></A>&nbsp;\r
  59 &nbsp;<A HREF="../../compbio/engine/Job.html" title="class in compbio.engine"><B>NEXT CLASS</B></A></FONT></TD>\r
  60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  61   <A HREF="../../index.html?compbio/engine/FilePuller.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
  62 &nbsp;<A HREF="FilePuller.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
  63 &nbsp;<SCRIPT type="text/javascript">\r
  64   <!--\r
  65   if(window==top) {\r
  66     document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');\r
  67   }\r
  68   //-->\r
  69 </SCRIPT>\r
  70 <NOSCRIPT>\r
  71   <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>\r
  72 </NOSCRIPT>\r
  73 \r
  74 \r
  75 </FONT></TD>\r
  76 </TR>\r
  77 <TR>\r
  78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
  80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
  81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
  82 </TR>\r
  83 </TABLE>\r
  84 <A NAME="skip-navbar_top"></A>\r
  85 <!-- ========= END OF TOP NAVBAR ========= -->\r
  86 \r
  87 <HR>\r
  88 <!-- ======== START OF CLASS DATA ======== -->\r
  89 <H2>\r
  90 <FONT SIZE="-1">\r
  91 compbio.engine</FONT>\r
  92 <BR>\r
  93 Class FilePuller</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.FilePuller</B>\r
  97 </PRE>\r
  98 <DL>\r
  99 <DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>&gt;, <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DD>\r
 100 </DL>\r
 101 <HR>\r
 102 <DL>\r
 103 <DT><PRE>public class <B>FilePuller</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A><DT>implements <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DL>\r
 104 </PRE>\r
 105 \r
 106 <P>\r
 107 <HR>\r
 108 \r
 109 <P>\r
 110 \r
 111 <!-- ========== METHOD SUMMARY =========== -->\r
 112 \r
 113 <A NAME="method_summary"><!-- --></A>\r
 114 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 115 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 116 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 117 <B>Method Summary</B></FONT></TH>\r
 118 </TR>\r
 119 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 120 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 121 <CODE>&nbsp;int</CODE></FONT></TD>\r
 122 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#compareTo(java.util.concurrent.Delayed)">compareTo</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>&nbsp;o)</CODE>\r
 123 \r
 124 <BR>\r
 125 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 129 <CODE>&nbsp;void</CODE></FONT></TD>\r
 130 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#disconnect()">disconnect</A></B>()</CODE>\r
 131 \r
 132 <BR>\r
 133 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 134 </TR>\r
 135 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 136 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 137 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 138 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
 139 \r
 140 <BR>\r
 141 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 142 </TR>\r
 143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 145 <CODE>&nbsp;long</CODE></FONT></TD>\r
 146 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getDelay(java.util.concurrent.TimeUnit)">getDelay</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A>&nbsp;unit)</CODE>\r
 147 \r
 148 <BR>\r
 149 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 150 </TR>\r
 151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 152 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 153 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 154 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getFile()">getFile</A></B>()</CODE>\r
 155 \r
 156 <BR>\r
 157 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 158 </TR>\r
 159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 161 <CODE>&nbsp;byte</CODE></FONT></TD>\r
 162 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getProgress()">getProgress</A></B>()</CODE>\r
 163 \r
 164 <BR>\r
 165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 166 </TR>\r
 167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 169 <CODE>&nbsp;int</CODE></FONT></TD>\r
 170 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#hashCode()">hashCode</A></B>()</CODE>\r
 171 \r
 172 <BR>\r
 173 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 174 </TR>\r
 175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 177 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 178 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#hasMoreData()">hasMoreData</A></B>()</CODE>\r
 179 \r
 180 <BR>\r
 181 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 182 </TR>\r
 183 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 184 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 185 <CODE>&nbsp;void</CODE></FONT></TD>\r
 186 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#initPull()">initPull</A></B>()</CODE>\r
 187 \r
 188 <BR>\r
 189 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 190 </TR>\r
 191 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 192 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 193 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
 194 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#isFileCreated()">isFileCreated</A></B>()</CODE>\r
 195 \r
 196 <BR>\r
 197 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 198 </TR>\r
 199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 200 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 201 <CODE>static&nbsp;<A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>\r
 202 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newFilePuller(java.lang.String, int)">newFilePuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file,\r
 203               int&nbsp;chunkSize)</CODE>\r
 204 \r
 205 <BR>\r
 206 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 207 </TR>\r
 208 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 209 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 210 <CODE>static&nbsp;<A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>\r
 211 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newProgressPuller(java.lang.String)">newProgressPuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file)</CODE>\r
 212 \r
 213 <BR>\r
 214 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Progress Puller is designed to read 3 characters from the beginning of
 215  the file, nothing more.</TD>\r
 216 </TR>\r
 217 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 218 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 219 <CODE>&nbsp;<A HREF="../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A></CODE></FONT></TD>\r
 220 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#pull(long)">pull</A></B>(long&nbsp;position)</CODE>\r
 221 \r
 222 <BR>\r
 223 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 224 </TR>\r
 225 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 226 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 227 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 228 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#toString()">toString</A></B>()</CODE>\r
 229 \r
 230 <BR>\r
 231 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 232 </TR>\r
 233 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 234 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 235 <CODE>&nbsp;void</CODE></FONT></TD>\r
 236 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#waitForFile(long)">waitForFile</A></B>(long&nbsp;maxWaitSeconds)</CODE>\r
 237 \r
 238 <BR>\r
 239 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 240 </TR>\r
 241 </TABLE>\r
 242 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 243 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 244 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 245 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 246 </TR>\r
 247 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 248 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 249 </TR>\r
 250 </TABLE>\r
 251 &nbsp;\r
 252 <P>\r
 253 \r
 254 <!-- ============ METHOD DETAIL ========== -->\r
 255 \r
 256 <A NAME="method_detail"><!-- --></A>\r
 257 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 258 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 259 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 260 <B>Method Detail</B></FONT></TH>\r
 261 </TR>\r
 262 </TABLE>\r
 263 \r
 264 <A NAME="newFilePuller(java.lang.String, int)"><!-- --></A><H3>\r
 265 newFilePuller</H3>\r
 266 <PRE>\r
 267 public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newFilePuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file,\r
 268                                        int&nbsp;chunkSize)</PRE>\r
 269 <DL>\r
 270 <DD><DL>\r
 271 </DL>\r
 272 </DD>\r
 273 <DD><DL>\r
 274 </DL>\r
 275 </DD>\r
 276 </DL>\r
 277 <HR>\r
 278 \r
 279 <A NAME="newProgressPuller(java.lang.String)"><!-- --></A><H3>\r
 280 newProgressPuller</H3>\r
 281 <PRE>\r
 282 public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newProgressPuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file)</PRE>\r
 283 <DL>\r
 284 <DD>Progress Puller is designed to read 3 characters from the beginning of
 285  the file, nothing more. Intended to be used in conjunction with a tool
 286  which output progress as a percent value from 0 to 100. In any cases
 287  progress could not be more than the largest byte value 255.\r
 288 <P>\r
 289 <DD><DL>\r
 290 </DL>\r
 291 </DD>\r
 292 <DD><DL>\r
 293 <DT><B>Parameters:</B><DD><CODE>file</CODE> - \r
 294 <DT><B>Returns:</B><DD>instance</DL>\r
 295 </DD>\r
 296 </DL>\r
 297 <HR>\r
 298 \r
 299 <A NAME="pull(long)"><!-- --></A><H3>\r
 300 pull</H3>\r
 301 <PRE>\r
 302 public <A HREF="../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A> <B>pull</B>(long&nbsp;position)\r
 303                  throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 304 <DL>\r
 305 <DD><DL>\r
 306 </DL>\r
 307 </DD>\r
 308 <DD><DL>\r
 309 \r
 310 <DT><B>Throws:</B>\r
 311 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
 312 </DD>\r
 313 </DL>\r
 314 <HR>\r
 315 \r
 316 <A NAME="initPull()"><!-- --></A><H3>\r
 317 initPull</H3>\r
 318 <PRE>\r
 319 public void <B>initPull</B>()</PRE>\r
 320 <DL>\r
 321 <DD><DL>\r
 322 </DL>\r
 323 </DD>\r
 324 <DD><DL>\r
 325 </DL>\r
 326 </DD>\r
 327 </DL>\r
 328 <HR>\r
 329 \r
 330 <A NAME="getFile()"><!-- --></A><H3>\r
 331 getFile</H3>\r
 332 <PRE>\r
 333 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getFile</B>()</PRE>\r
 334 <DL>\r
 335 <DD><DL>\r
 336 </DL>\r
 337 </DD>\r
 338 <DD><DL>\r
 339 </DL>\r
 340 </DD>\r
 341 </DL>\r
 342 <HR>\r
 343 \r
 344 <A NAME="isFileCreated()"><!-- --></A><H3>\r
 345 isFileCreated</H3>\r
 346 <PRE>\r
 347 public boolean <B>isFileCreated</B>()</PRE>\r
 348 <DL>\r
 349 <DD><DL>\r
 350 </DL>\r
 351 </DD>\r
 352 <DD><DL>\r
 353 </DL>\r
 354 </DD>\r
 355 </DL>\r
 356 <HR>\r
 357 \r
 358 <A NAME="waitForFile(long)"><!-- --></A><H3>\r
 359 waitForFile</H3>\r
 360 <PRE>\r
 361 public void <B>waitForFile</B>(long&nbsp;maxWaitSeconds)</PRE>\r
 362 <DL>\r
 363 <DD><DL>\r
 364 </DL>\r
 365 </DD>\r
 366 <DD><DL>\r
 367 </DL>\r
 368 </DD>\r
 369 </DL>\r
 370 <HR>\r
 371 \r
 372 <A NAME="hasMoreData()"><!-- --></A><H3>\r
 373 hasMoreData</H3>\r
 374 <PRE>\r
 375 public boolean <B>hasMoreData</B>()\r
 376                     throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 377 <DL>\r
 378 <DD><DL>\r
 379 </DL>\r
 380 </DD>\r
 381 <DD><DL>\r
 382 \r
 383 <DT><B>Throws:</B>\r
 384 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
 385 </DD>\r
 386 </DL>\r
 387 <HR>\r
 388 \r
 389 <A NAME="compareTo(java.util.concurrent.Delayed)"><!-- --></A><H3>\r
 390 compareTo</H3>\r
 391 <PRE>\r
 392 public int <B>compareTo</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>&nbsp;o)</PRE>\r
 393 <DL>\r
 394 <DD><DL>\r
 395 <DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true#compareTo(T)" title="class or interface in java.lang">compareTo</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A>&lt;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>&gt;</CODE></DL>\r
 396 </DD>\r
 397 <DD><DL>\r
 398 </DL>\r
 399 </DD>\r
 400 </DL>\r
 401 <HR>\r
 402 \r
 403 <A NAME="getDelay(java.util.concurrent.TimeUnit)"><!-- --></A><H3>\r
 404 getDelay</H3>\r
 405 <PRE>\r
 406 public long <B>getDelay</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A>&nbsp;unit)</PRE>\r
 407 <DL>\r
 408 <DD><DL>\r
 409 <DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true#getDelay(java.util.concurrent.TimeUnit)" title="class or interface in java.util.concurrent">getDelay</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></CODE></DL>\r
 410 </DD>\r
 411 <DD><DL>\r
 412 </DL>\r
 413 </DD>\r
 414 </DL>\r
 415 <HR>\r
 416 \r
 417 <A NAME="disconnect()"><!-- --></A><H3>\r
 418 disconnect</H3>\r
 419 <PRE>\r
 420 public void <B>disconnect</B>()</PRE>\r
 421 <DL>\r
 422 <DD><DL>\r
 423 </DL>\r
 424 </DD>\r
 425 <DD><DL>\r
 426 </DL>\r
 427 </DD>\r
 428 </DL>\r
 429 <HR>\r
 430 \r
 431 <A NAME="toString()"><!-- --></A><H3>\r
 432 toString</H3>\r
 433 <PRE>\r
 434 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
 435 <DL>\r
 436 <DD><DL>\r
 437 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 438 </DD>\r
 439 <DD><DL>\r
 440 </DL>\r
 441 </DD>\r
 442 </DL>\r
 443 <HR>\r
 444 \r
 445 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
 446 equals</H3>\r
 447 <PRE>\r
 448 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
 449 <DL>\r
 450 <DD><DL>\r
 451 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 452 </DD>\r
 453 <DD><DL>\r
 454 </DL>\r
 455 </DD>\r
 456 </DL>\r
 457 <HR>\r
 458 \r
 459 <A NAME="hashCode()"><!-- --></A><H3>\r
 460 hashCode</H3>\r
 461 <PRE>\r
 462 public int <B>hashCode</B>()</PRE>\r
 463 <DL>\r
 464 <DD><DL>\r
 465 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
 466 </DD>\r
 467 <DD><DL>\r
 468 </DL>\r
 469 </DD>\r
 470 </DL>\r
 471 <HR>\r
 472 \r
 473 <A NAME="getProgress()"><!-- --></A><H3>\r
 474 getProgress</H3>\r
 475 <PRE>\r
 476 public byte <B>getProgress</B>()\r
 477                  throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 478 <DL>\r
 479 <DD><DL>\r
 480 </DL>\r
 481 </DD>\r
 482 <DD><DL>\r
 483 \r
 484 <DT><B>Throws:</B>\r
 485 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
 486 </DD>\r
 487 </DL>\r
 488 <!-- ========= END OF CLASS DATA ========= -->\r
 489 <HR>\r
 490 \r
 491 \r
 492 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 493 <A NAME="navbar_bottom"><!-- --></A>\r
 494 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 495 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 496 <TR>\r
 497 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 498 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 499 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 500   <TR ALIGN="center" VALIGN="top">\r
 501   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 502   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 503   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
 504   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/FilePuller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 505   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 506   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 507   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 508   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 509   </TR>\r
 510 </TABLE>\r
 511 </TD>\r
 512 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 513 </EM>\r
 514 </TD>\r
 515 </TR>\r
 516 \r
 517 <TR>\r
 518 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 519 &nbsp;<A HREF="../../compbio/engine/Configurator.html" title="class in compbio.engine"><B>PREV CLASS</B></A>&nbsp;\r
 520 &nbsp;<A HREF="../../compbio/engine/Job.html" title="class in compbio.engine"><B>NEXT CLASS</B></A></FONT></TD>\r
 521 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 522   <A HREF="../../index.html?compbio/engine/FilePuller.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 523 &nbsp;<A HREF="FilePuller.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 524 &nbsp;<SCRIPT type="text/javascript">\r
 525   <!--\r
 526   if(window==top) {\r
 527     document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 528   }\r
 529   //-->\r
 530 </SCRIPT>\r
 531 <NOSCRIPT>\r
 532   <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>\r
 533 </NOSCRIPT>\r
 534 \r
 535 \r
 536 </FONT></TD>\r
 537 </TR>\r
 538 <TR>\r
 539 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 540   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
 541 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 542 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
 543 </TR>\r
 544 </TABLE>\r
 545 <A NAME="skip-navbar_bottom"></A>\r
 546 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 547 \r
 548 <HR>\r
 549 \r
 550 </BODY>\r
 551 </HTML>\r