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  83 Package compbio.engine.client\r
  84 </H2>\r
  85 Classes and interfaces representing an input for engines.\r
  86 <P>\r
  87 <B>See:</B>\r
  88 <BR>\r
  89 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<A HREF="#package_description"><B>Description</B></A>\r
  90 <P>\r
  91 \r
  92 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  93 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  94 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  95 <B>Interface Summary</B></FONT></TH>\r
  96 </TR>\r
  97 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  98 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ClusterNativeSpecExecutable.html" title="interface in compbio.engine.client">ClusterNativeSpecExecutable&lt;T&gt;</A></B></TD>\r
  99 <TD>&nbsp;</TD>\r
 100 </TR>\r
 101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 102 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable&lt;T&gt;</A></B></TD>\r
 103 <TD>&nbsp;</TD>\r
 104 </TR>\r
 105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 106 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable&lt;T&gt;</A></B></TD>\r
 107 <TD>Interface to a native executable.</TD>\r
 108 </TR>\r
 109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 110 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client">PipedExecutable&lt;T&gt;</A></B></TD>\r
 111 <TD>This is a marker interface to indicate that the output of the process must be\r
 112  captured.</TD>\r
 113 </TR>\r
 114 </TABLE>\r
 115 &nbsp;\r
 116 \r
 117 <P>\r
 118 \r
 119 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 120 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 121 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 122 <B>Class Summary</B></FONT></TH>\r
 123 </TR>\r
 124 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 125 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder&lt;T&gt;</A></B></TD>\r
 126 <TD>&nbsp;</TD>\r
 127 </TR>\r
 128 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 129 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable&lt;T&gt;</A></B></TD>\r
 130 <TD>&nbsp;</TD>\r
 131 </TR>\r
 132 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 133 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/EnvVariableProcessor.html" title="class in compbio.engine.client">EnvVariableProcessor</A></B></TD>\r
 134 <TD>&nbsp;</TD>\r
 135 </TR>\r
 136 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 137 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A></B></TD>\r
 138 <TD>&nbsp;</TD>\r
 139 </TR>\r
 140 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 141 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</A></B></TD>\r
 142 <TD>Value class for persisting ConfExecutable instances</TD>\r
 143 </TR>\r
 144 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 145 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable&lt;T&gt;</A></B></TD>\r
 146 <TD>&nbsp;</TD>\r
 147 </TR>\r
 148 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 149 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</A></B></TD>\r
 150 <TD>&nbsp;</TD>\r
 151 </TR>\r
 152 </TABLE>\r
 153 &nbsp;\r
 154 \r
 155 <P>\r
 156 \r
 157 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 158 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 159 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 160 <B>Enum Summary</B></FONT></TH>\r
 161 </TR>\r
 162 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 163 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></B></TD>\r
 164 <TD>&nbsp;</TD>\r
 165 </TR>\r
 166 </TABLE>\r
 167 &nbsp;\r
 168 \r
 169 <P>\r
 170 <A NAME="package_description"><!-- --></A><H2>\r
 171 Package compbio.engine.client Description\r
 172 </H2>\r
 173 \r
 174 <P>\r
 175 Classes and interfaces representing an input for engines. These classes are known to runners, \r
 176  which form the next layer of the JABAWS hierarchy.\r
 177 <P>\r
 178 \r
 179 <P>\r
 180 <DL>\r
 181 <DT><B>Author:</B></DT>\r
 182   <DD>Petr Troshin \r
 183  \r
 184         Date January 2010</DD>\r
 185 </DL>\r
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 212 </TR>\r
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