updated javadoc
[jabaws.git] / website / full_javadoc / compbio / engine / cluster / drmaa / ClusterSession.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
6 <TITLE>\r
7 ClusterSession\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="ClusterSession";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/ClusterSession.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="../../../../compbio/engine/cluster/drmaa/AsyncJobRunner.html" title="class in compbio.engine.cluster.drmaa"><B>PREV CLASS</B></A>&nbsp;\r
59 &nbsp;<A HREF="../../../../compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa"><B>NEXT CLASS</B></A></FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../../index.html?compbio/engine/cluster/drmaa/ClusterSession.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="ClusterSession.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 <TR>\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
81 DETAIL:&nbsp;<A HREF="#field_detail">FIELD</A>&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
82 </TR>\r
83 </TABLE>\r
84 <A NAME="skip-navbar_top"></A>\r
85 <!-- ========= END OF TOP NAVBAR ========= -->\r
86 \r
87 <HR>\r
88 <!-- ======== START OF CLASS DATA ======== -->\r
89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.engine.cluster.drmaa</FONT>\r
92 <BR>\r
93 Class ClusterSession</H2>\r
94 <PRE>\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
96   <IMG SRC="../../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.cluster.drmaa.ClusterSession</B>\r
97 </PRE>\r
98 <HR>\r
99 <DL>\r
100 <DT><PRE>public final class <B>ClusterSession</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
101 </PRE>\r
102 \r
103 <P>\r
104 <HR>\r
105 \r
106 <P>\r
107 <!-- =========== FIELD SUMMARY =========== -->\r
108 \r
109 <A NAME="field_summary"><!-- --></A>\r
110 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
111 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
112 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
113 <B>Field Summary</B></FONT></TH>\r
114 </TR>\r
115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
116 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
117 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
118 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#JOBID">JOBID</A></B></CODE>\r
119 \r
120 <BR>\r
121 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
122 </TR>\r
123 </TABLE>\r
124 &nbsp;\r
125 <!-- ========== METHOD SUMMARY =========== -->\r
126 \r
127 <A NAME="method_summary"><!-- --></A>\r
128 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
129 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
130 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
131 <B>Method Summary</B></FONT></TH>\r
132 </TR>\r
133 <TR BGCOLOR="white" CLASS="TableRowColor">\r
134 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
135 <CODE>&nbsp;void</CODE></FONT></TD>\r
136 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#close()">close</A></B>()</CODE>\r
137 \r
138 <BR>\r
139 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
140 </TR>\r
141 <TR BGCOLOR="white" CLASS="TableRowColor">\r
142 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
143 <CODE>static&nbsp;<A HREF="../../../../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A></CODE></FONT></TD>\r
144 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getClusterJobId(java.lang.String)">getClusterJobId</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
145 \r
146 <BR>\r
147 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
148 </TR>\r
149 <TR BGCOLOR="white" CLASS="TableRowColor">\r
150 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
151 <CODE>&nbsp;int</CODE></FONT></TD>\r
152 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getJobStatus(compbio.engine.ClusterJobId)">getJobStatus</A></B>(<A HREF="../../../../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A>&nbsp;jobId)</CODE>\r
153 \r
154 <BR>\r
155 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Apparently completed jobs cannot be found! If this happened most likely
156  that the job is not running any more and Most likely it has been
157  cancelled, finished or failed.</TD>\r
158 </TR>\r
159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
161 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
162 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getJobStatus(int)">getJobStatus</A></B>(int&nbsp;status)</CODE>\r
163 \r
164 <BR>\r
165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;</TD>\r
166 </TR>\r
167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
169 <CODE>&nbsp;<A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;</CODE></FONT></TD>\r
170 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
171 \r
172 <BR>\r
173 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
174 </TR>\r
175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
177 <CODE>&nbsp;org.ggf.drmaa.Session</CODE></FONT></TD>\r
178 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getSession()">getSession</A></B>()</CODE>\r
179 \r
180 <BR>\r
181 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
182 </TR>\r
183 <TR BGCOLOR="white" CLASS="TableRowColor">\r
184 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
185 <CODE>static&nbsp;<A HREF="../../../../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A></CODE></FONT></TD>\r
186 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#getStatistics(org.ggf.drmaa.JobInfo)">getStatistics</A></B>(org.ggf.drmaa.JobInfo&nbsp;status)</CODE>\r
187 \r
188 <BR>\r
189 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
190 </TR>\r
191 <TR BGCOLOR="white" CLASS="TableRowColor">\r
192 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
193 <CODE>&nbsp;void</CODE></FONT></TD>\r
194 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#removeJob(java.lang.String)">removeJob</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
195 \r
196 <BR>\r
197 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
198 </TR>\r
199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
200 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
201 <CODE>&nbsp;org.ggf.drmaa.JobInfo</CODE></FONT></TD>\r
202 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#waitForJob(java.lang.String)">waitForJob</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
203 \r
204 <BR>\r
205 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
206 </TR>\r
207 <TR BGCOLOR="white" CLASS="TableRowColor">\r
208 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
209 <CODE>&nbsp;org.ggf.drmaa.JobInfo</CODE></FONT></TD>\r
210 <TD><CODE><B><A HREF="../../../../compbio/engine/cluster/drmaa/ClusterSession.html#waitForJob(java.lang.String, long)">waitForJob</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;jobId,\r
211            long&nbsp;waitingTime)</CODE>\r
212 \r
213 <BR>\r
214 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
215 </TR>\r
216 </TABLE>\r
217 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
218 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
219 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
220 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
221 </TR>\r
222 <TR BGCOLOR="white" CLASS="TableRowColor">\r
223 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
224 </TR>\r
225 </TABLE>\r
226 &nbsp;\r
227 <P>\r
228 \r
229 <!-- ============ FIELD DETAIL =========== -->\r
230 \r
231 <A NAME="field_detail"><!-- --></A>\r
232 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
233 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
234 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
235 <B>Field Detail</B></FONT></TH>\r
236 </TR>\r
237 </TABLE>\r
238 \r
239 <A NAME="JOBID"><!-- --></A><H3>\r
240 JOBID</H3>\r
241 <PRE>\r
242 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>JOBID</B></PRE>\r
243 <DL>\r
244 <DL>\r
245 <DT><B>See Also:</B><DD><A HREF="../../../../constant-values.html#compbio.engine.cluster.drmaa.ClusterSession.JOBID">Constant Field Values</A></DL>\r
246 </DL>\r
247 \r
248 <!-- ============ METHOD DETAIL ========== -->\r
249 \r
250 <A NAME="method_detail"><!-- --></A>\r
251 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
252 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
253 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
254 <B>Method Detail</B></FONT></TH>\r
255 </TR>\r
256 </TABLE>\r
257 \r
258 <A NAME="getSession()"><!-- --></A><H3>\r
259 getSession</H3>\r
260 <PRE>\r
261 public org.ggf.drmaa.Session <B>getSession</B>()</PRE>\r
262 <DL>\r
263 <DD><DL>\r
264 </DL>\r
265 </DD>\r
266 </DL>\r
267 <HR>\r
268 \r
269 <A NAME="close()"><!-- --></A><H3>\r
270 close</H3>\r
271 <PRE>\r
272 public void <B>close</B>()</PRE>\r
273 <DL>\r
274 <DD><DL>\r
275 </DL>\r
276 </DD>\r
277 </DL>\r
278 <HR>\r
279 \r
280 <A NAME="removeJob(java.lang.String)"><!-- --></A><H3>\r
281 removeJob</H3>\r
282 <PRE>\r
283 public void <B>removeJob</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</PRE>\r
284 <DL>\r
285 <DD><DL>\r
286 </DL>\r
287 </DD>\r
288 </DL>\r
289 <HR>\r
290 \r
291 <A NAME="waitForJob(java.lang.String)"><!-- --></A><H3>\r
292 waitForJob</H3>\r
293 <PRE>\r
294 public org.ggf.drmaa.JobInfo <B>waitForJob</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)\r
295                                  throws org.ggf.drmaa.DrmaaException,\r
296                                         <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
297 <DL>\r
298 <DD><DL>\r
299 \r
300 <DT><B>Throws:</B>\r
301 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE>\r
302 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
303 </DD>\r
304 </DL>\r
305 <HR>\r
306 \r
307 <A NAME="getClusterJobId(java.lang.String)"><!-- --></A><H3>\r
308 getClusterJobId</H3>\r
309 <PRE>\r
310 public static <A HREF="../../../../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A> <B>getClusterJobId</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)\r
311                                     throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
312 <DL>\r
313 <DD><DL>\r
314 \r
315 <DT><B>Throws:</B>\r
316 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
317 </DD>\r
318 </DL>\r
319 <HR>\r
320 \r
321 <A NAME="waitForJob(java.lang.String, long)"><!-- --></A><H3>\r
322 waitForJob</H3>\r
323 <PRE>\r
324 public org.ggf.drmaa.JobInfo <B>waitForJob</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;jobId,\r
325                                         long&nbsp;waitingTime)\r
326                                  throws org.ggf.drmaa.DrmaaException,\r
327                                         <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
328 <DL>\r
329 <DD><DL>\r
330 \r
331 <DT><B>Throws:</B>\r
332 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE>\r
333 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
334 </DD>\r
335 </DL>\r
336 <HR>\r
337 \r
338 <A NAME="getResults(java.lang.String)"><!-- --></A><H3>\r
339 getResults</H3>\r
340 <PRE>\r
341 public <A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt; <B>getResults</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)\r
342                                    throws org.ggf.drmaa.DrmaaException,\r
343                                           <A HREF="../../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></PRE>\r
344 <DL>\r
345 <DD><DL>\r
346 \r
347 <DT><B>Throws:</B>\r
348 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE>\r
349 <DD><CODE><A HREF="../../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></CODE></DL>\r
350 </DD>\r
351 </DL>\r
352 <HR>\r
353 \r
354 <A NAME="getStatistics(org.ggf.drmaa.JobInfo)"><!-- --></A><H3>\r
355 getStatistics</H3>\r
356 <PRE>\r
357 public static <A HREF="../../../../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A> <B>getStatistics</B>(org.ggf.drmaa.JobInfo&nbsp;status)\r
358                                       throws org.ggf.drmaa.DrmaaException</PRE>\r
359 <DL>\r
360 <DD><DL>\r
361 \r
362 <DT><B>Throws:</B>\r
363 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE></DL>\r
364 </DD>\r
365 </DL>\r
366 <HR>\r
367 \r
368 <A NAME="getJobStatus(compbio.engine.ClusterJobId)"><!-- --></A><H3>\r
369 getJobStatus</H3>\r
370 <PRE>\r
371 public int <B>getJobStatus</B>(<A HREF="../../../../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A>&nbsp;jobId)\r
372                  throws org.ggf.drmaa.DrmaaException,\r
373                         org.ggf.drmaa.InvalidJobException</PRE>\r
374 <DL>\r
375 <DD>Apparently completed jobs cannot be found! If this happened most likely
376  that the job is not running any more and Most likely it has been
377  cancelled, finished or failed.\r
378 <P>\r
379 <DD><DL>\r
380 \r
381 <DT><B>Throws:</B>\r
382 <DD><CODE>org.ggf.drmaa.InvalidJobException</CODE> - if the job is no longer in the queue or running. basically it
383              will throw this exception for all finished or cancelled jobs\r
384 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE></DL>\r
385 </DD>\r
386 </DL>\r
387 <HR>\r
388 \r
389 <A NAME="getJobStatus(int)"><!-- --></A><H3>\r
390 getJobStatus</H3>\r
391 <PRE>\r
392 <FONT SIZE="-1"><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Deprecated.html?is-external=true" title="class or interface in java.lang">@Deprecated</A>\r
393 </FONT>public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getJobStatus</B>(int&nbsp;status)\r
394                            throws org.ggf.drmaa.DrmaaException</PRE>\r
395 <DL>\r
396 <DD><B>Deprecated.</B>&nbsp;\r
397 <P>\r
398 <DD>Method for getting jobs status by quering the cluster, It returns status
399  in therms of a Sessions, not a JobStatus Should only be used for testing!\r
400 <P>\r
401 <DD><DL>\r
402 <DT><B>Parameters:</B><DD><CODE>status</CODE> - \r
403 <DT><B>Returns:</B><DD>job status\r
404 <DT><B>Throws:</B>\r
405 <DD><CODE>org.ggf.drmaa.DrmaaException</CODE></DL>\r
406 </DD>\r
407 </DL>\r
408 <!-- ========= END OF CLASS DATA ========= -->\r
409 <HR>\r
410 \r
411 \r
412 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
413 <A NAME="navbar_bottom"><!-- --></A>\r
414 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
415 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
416 <TR>\r
417 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
418 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
419 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
420   <TR ALIGN="center" VALIGN="top">\r
421   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
422   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
423   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
424   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/ClusterSession.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
425   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
426   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
427   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
428   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
429   </TR>\r
430 </TABLE>\r
431 </TD>\r
432 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
433 </EM>\r
434 </TD>\r
435 </TR>\r
436 \r
437 <TR>\r
438 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
439 &nbsp;<A HREF="../../../../compbio/engine/cluster/drmaa/AsyncJobRunner.html" title="class in compbio.engine.cluster.drmaa"><B>PREV CLASS</B></A>&nbsp;\r
440 &nbsp;<A HREF="../../../../compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa"><B>NEXT CLASS</B></A></FONT></TD>\r
441 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
442   <A HREF="../../../../index.html?compbio/engine/cluster/drmaa/ClusterSession.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
443 &nbsp;<A HREF="ClusterSession.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
444 &nbsp;<SCRIPT type="text/javascript">\r
445   <!--\r
446   if(window==top) {\r
447     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
448   }\r
449   //-->\r
450 </SCRIPT>\r
451 <NOSCRIPT>\r
452   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
453 </NOSCRIPT>\r
454 \r
455 \r
456 </FONT></TD>\r
457 </TR>\r
458 <TR>\r
459 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
460   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
461 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
462 DETAIL:&nbsp;<A HREF="#field_detail">FIELD</A>&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
463 </TR>\r
464 </TABLE>\r
465 <A NAME="skip-navbar_bottom"></A>\r
466 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
467 \r
468 <HR>\r
469 \r
470 </BODY>\r
471 </HTML>\r