updated javadoc
[jabaws.git] / website / full_javadoc / compbio / engine / conf / RunnerConfigMarshaller.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
6 <TITLE>\r
7 RunnerConfigMarshaller\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="RunnerConfigMarshaller";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/RunnerConfigMarshaller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="../../../compbio/engine/conf/PropertyHelperManager.html" title="class in compbio.engine.conf"><B>PREV CLASS</B></A>&nbsp;\r
59 &nbsp;NEXT CLASS</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/engine/conf/RunnerConfigMarshaller.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="RunnerConfigMarshaller.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 <TR>\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
82 </TR>\r
83 </TABLE>\r
84 <A NAME="skip-navbar_top"></A>\r
85 <!-- ========= END OF TOP NAVBAR ========= -->\r
86 \r
87 <HR>\r
88 <!-- ======== START OF CLASS DATA ======== -->\r
89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.engine.conf</FONT>\r
92 <BR>\r
93 Class RunnerConfigMarshaller&lt;T&gt;</H2>\r
94 <PRE>\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.conf.RunnerConfigMarshaller&lt;T&gt;</B>\r
97 </PRE>\r
98 <HR>\r
99 <DL>\r
100 <DT><PRE>public class <B>RunnerConfigMarshaller&lt;T&gt;</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
101 </PRE>\r
102 \r
103 <P>\r
104 <HR>\r
105 \r
106 <P>\r
107 \r
108 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
109 \r
110 <A NAME="constructor_summary"><!-- --></A>\r
111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
112 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
114 <B>Constructor Summary</B></FONT></TH>\r
115 </TR>\r
116 <TR BGCOLOR="white" CLASS="TableRowColor">\r
117 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#RunnerConfigMarshaller(java.lang.Class)">RunnerConfigMarshaller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;&nbsp;rootClass)</CODE>\r
118 \r
119 <BR>\r
120 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
121 </TR>\r
122 <TR BGCOLOR="white" CLASS="TableRowColor">\r
123 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#RunnerConfigMarshaller(java.lang.Class, java.lang.Class...)">RunnerConfigMarshaller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;&nbsp;rootClass,\r
124                        <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;...&nbsp;classes)</CODE>\r
125 \r
126 <BR>\r
127 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
128 </TR>\r
129 </TABLE>\r
130 &nbsp;\r
131 <!-- ========== METHOD SUMMARY =========== -->\r
132 \r
133 <A NAME="method_summary"><!-- --></A>\r
134 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
135 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
136 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
137 <B>Method Summary</B></FONT></TH>\r
138 </TR>\r
139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
140 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
141 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Schema.html?is-external=true" title="class or interface in javax.xml.validation">Schema</A></CODE></FONT></TD>\r
142 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getSchema(java.lang.String)">getSchema</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile)</CODE>\r
143 \r
144 <BR>\r
145 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
146 </TR>\r
147 <TR BGCOLOR="white" CLASS="TableRowColor">\r
148 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
149 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A></CODE></FONT></TD>\r
150 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getValidator(javax.xml.validation.Schema)">getValidator</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Schema.html?is-external=true" title="class or interface in javax.xml.validation">Schema</A>&nbsp;schema)</CODE>\r
151 \r
152 <BR>\r
153 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
154 </TR>\r
155 <TR BGCOLOR="white" CLASS="TableRowColor">\r
156 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
157 <CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A></CODE></FONT></TD>\r
158 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getValidator(java.lang.String)">getValidator</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile)</CODE>\r
159 \r
160 <BR>\r
161 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
162 </TR>\r
163 <TR BGCOLOR="white" CLASS="TableRowColor">\r
164 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
165 <CODE>\r
166 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
167 <TR ALIGN="right" VALIGN="">\r
168 <TD NOWRAP><FONT SIZE="-1">\r
169 <CODE>&lt;V&gt; V</CODE></FONT></TD>\r
170 </TR>\r
171 </TABLE>\r
172 </CODE></FONT></TD>\r
173 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#read(java.io.InputStream, java.lang.Class)">read</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;instream,\r
174      <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType)</CODE>\r
175 \r
176 <BR>\r
177 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
178 </TR>\r
179 <TR BGCOLOR="white" CLASS="TableRowColor">\r
180 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
181 <CODE>\r
182 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
183 <TR ALIGN="right" VALIGN="">\r
184 <TD NOWRAP><FONT SIZE="-1">\r
185 <CODE>&lt;V&gt; V</CODE></FONT></TD>\r
186 </TR>\r
187 </TABLE>\r
188 </CODE></FONT></TD>\r
189 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#read(java.io.InputStream, java.lang.Class, java.lang.Class...)">read</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;instream,\r
190      <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType,\r
191      <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;...&nbsp;classes)</CODE>\r
192 \r
193 <BR>\r
194 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
195 </TR>\r
196 <TR BGCOLOR="white" CLASS="TableRowColor">\r
197 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
198 <CODE>\r
199 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
200 <TR ALIGN="right" VALIGN="">\r
201 <TD NOWRAP><FONT SIZE="-1">\r
202 <CODE>&lt;V&gt; V</CODE></FONT></TD>\r
203 </TR>\r
204 </TABLE>\r
205 </CODE></FONT></TD>\r
206 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#readAndValidate(java.io.InputStream, java.lang.Class)">readAndValidate</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;document,\r
207                 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType)</CODE>\r
208 \r
209 <BR>\r
210 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
211 </TR>\r
212 <TR BGCOLOR="white" CLASS="TableRowColor">\r
213 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
214 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
215 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#validate(javax.xml.validation.Validator, java.lang.String)">validate</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A>&nbsp;validator,\r
216          <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;document)</CODE>\r
217 \r
218 <BR>\r
219 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
220 </TR>\r
221 <TR BGCOLOR="white" CLASS="TableRowColor">\r
222 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
223 <CODE>&nbsp;void</CODE></FONT></TD>\r
224 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#write(java.lang.Object, java.io.OutputStream)">write</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;xmlRootElement,\r
225       <A HREF="http://java.sun.com/javase/6/docs/api/java/io/OutputStream.html?is-external=true" title="class or interface in java.io">OutputStream</A>&nbsp;out)</CODE>\r
226 \r
227 <BR>\r
228 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
229 </TR>\r
230 <TR BGCOLOR="white" CLASS="TableRowColor">\r
231 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
232 <CODE>&nbsp;void</CODE></FONT></TD>\r
233 <TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#writeAndValidate(java.lang.Object, java.lang.String, java.io.OutputStream)">writeAndValidate</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;xmlRootElement,\r
234                  <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile,\r
235                  <A HREF="http://java.sun.com/javase/6/docs/api/java/io/OutputStream.html?is-external=true" title="class or interface in java.io">OutputStream</A>&nbsp;out)</CODE>\r
236 \r
237 <BR>\r
238 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
239 </TR>\r
240 </TABLE>\r
241 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
242 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
243 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
244 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
245 </TR>\r
246 <TR BGCOLOR="white" CLASS="TableRowColor">\r
247 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
248 </TR>\r
249 </TABLE>\r
250 &nbsp;\r
251 <P>\r
252 \r
253 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
254 \r
255 <A NAME="constructor_detail"><!-- --></A>\r
256 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
257 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
258 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
259 <B>Constructor Detail</B></FONT></TH>\r
260 </TR>\r
261 </TABLE>\r
262 \r
263 <A NAME="RunnerConfigMarshaller(java.lang.Class)"><!-- --></A><H3>\r
264 RunnerConfigMarshaller</H3>\r
265 <PRE>\r
266 public <B>RunnerConfigMarshaller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;&nbsp;rootClass)\r
267                        throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></PRE>\r
268 <DL>\r
269 <DL>\r
270 \r
271 <DT><B>Throws:</B>\r
272 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE></DL>\r
273 </DL>\r
274 <HR>\r
275 \r
276 <A NAME="RunnerConfigMarshaller(java.lang.Class, java.lang.Class...)"><!-- --></A><H3>\r
277 RunnerConfigMarshaller</H3>\r
278 <PRE>\r
279 public <B>RunnerConfigMarshaller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;&nbsp;rootClass,\r
280                               <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;...&nbsp;classes)\r
281                        throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></PRE>\r
282 <DL>\r
283 <DL>\r
284 \r
285 <DT><B>Throws:</B>\r
286 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE></DL>\r
287 </DL>\r
288 \r
289 <!-- ============ METHOD DETAIL ========== -->\r
290 \r
291 <A NAME="method_detail"><!-- --></A>\r
292 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
293 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
294 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
295 <B>Method Detail</B></FONT></TH>\r
296 </TR>\r
297 </TABLE>\r
298 \r
299 <A NAME="write(java.lang.Object, java.io.OutputStream)"><!-- --></A><H3>\r
300 write</H3>\r
301 <PRE>\r
302 public void <B>write</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;xmlRootElement,\r
303                   <A HREF="http://java.sun.com/javase/6/docs/api/java/io/OutputStream.html?is-external=true" title="class or interface in java.io">OutputStream</A>&nbsp;out)\r
304            throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A>,\r
305                   <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
306 <DL>\r
307 <DD><DL>\r
308 \r
309 <DT><B>Throws:</B>\r
310 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE>\r
311 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
312 </DD>\r
313 </DL>\r
314 <HR>\r
315 \r
316 <A NAME="writeAndValidate(java.lang.Object, java.lang.String, java.io.OutputStream)"><!-- --></A><H3>\r
317 writeAndValidate</H3>\r
318 <PRE>\r
319 public void <B>writeAndValidate</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;xmlRootElement,\r
320                              <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile,\r
321                              <A HREF="http://java.sun.com/javase/6/docs/api/java/io/OutputStream.html?is-external=true" title="class or interface in java.io">OutputStream</A>&nbsp;out)\r
322                       throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A>,\r
323                              <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A>,\r
324                              <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
325 <DL>\r
326 <DD><DL>\r
327 \r
328 <DT><B>Throws:</B>\r
329 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE>\r
330 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE>\r
331 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
332 </DD>\r
333 </DL>\r
334 <HR>\r
335 \r
336 <A NAME="getSchema(java.lang.String)"><!-- --></A><H3>\r
337 getSchema</H3>\r
338 <PRE>\r
339 public static <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Schema.html?is-external=true" title="class or interface in javax.xml.validation">Schema</A> <B>getSchema</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile)\r
340                         throws <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
341 <DL>\r
342 <DD><DL>\r
343 \r
344 <DT><B>Throws:</B>\r
345 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
346 </DD>\r
347 </DL>\r
348 <HR>\r
349 \r
350 <A NAME="getValidator(java.lang.String)"><!-- --></A><H3>\r
351 getValidator</H3>\r
352 <PRE>\r
353 public static <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A> <B>getValidator</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;schemafile)\r
354                               throws <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
355 <DL>\r
356 <DD><DL>\r
357 \r
358 <DT><B>Returns:</B><DD>validator instance\r
359 <DT><B>Throws:</B>\r
360 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
361 </DD>\r
362 </DL>\r
363 <HR>\r
364 \r
365 <A NAME="getValidator(javax.xml.validation.Schema)"><!-- --></A><H3>\r
366 getValidator</H3>\r
367 <PRE>\r
368 public static <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A> <B>getValidator</B>(<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Schema.html?is-external=true" title="class or interface in javax.xml.validation">Schema</A>&nbsp;schema)\r
369                               throws <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
370 <DL>\r
371 <DD><DL>\r
372 \r
373 <DT><B>Throws:</B>\r
374 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
375 </DD>\r
376 </DL>\r
377 <HR>\r
378 \r
379 <A NAME="validate(javax.xml.validation.Validator, java.lang.String)"><!-- --></A><H3>\r
380 validate</H3>\r
381 <PRE>\r
382 public static boolean <B>validate</B>(<A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/validation/Validator.html?is-external=true" title="class or interface in javax.xml.validation">Validator</A>&nbsp;validator,\r
383                                <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;document)\r
384                         throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A>,\r
385                                <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
386 <DL>\r
387 <DD><DL>\r
388 \r
389 <DT><B>Throws:</B>\r
390 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE>\r
391 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
392 </DD>\r
393 </DL>\r
394 <HR>\r
395 \r
396 <A NAME="readAndValidate(java.io.InputStream, java.lang.Class)"><!-- --></A><H3>\r
397 readAndValidate</H3>\r
398 <PRE>\r
399 public &lt;V&gt; V <B>readAndValidate</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;document,\r
400                              <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType)\r
401                   throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A>,\r
402                          <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A>,\r
403                          <A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></PRE>\r
404 <DL>\r
405 <DD><DL>\r
406 \r
407 <DT><B>Throws:</B>\r
408 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE>\r
409 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE>\r
410 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/org/xml/sax/SAXException.html?is-external=true" title="class or interface in org.xml.sax">SAXException</A></CODE></DL>\r
411 </DD>\r
412 </DL>\r
413 <HR>\r
414 \r
415 <A NAME="read(java.io.InputStream, java.lang.Class)"><!-- --></A><H3>\r
416 read</H3>\r
417 <PRE>\r
418 public &lt;V&gt; V <B>read</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;instream,\r
419                   <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType)\r
420        throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></PRE>\r
421 <DL>\r
422 <DD><DL>\r
423 \r
424 <DT><B>Throws:</B>\r
425 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE></DL>\r
426 </DD>\r
427 </DL>\r
428 <HR>\r
429 \r
430 <A NAME="read(java.io.InputStream, java.lang.Class, java.lang.Class...)"><!-- --></A><H3>\r
431 read</H3>\r
432 <PRE>\r
433 public &lt;V&gt; V <B>read</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/InputStream.html?is-external=true" title="class or interface in java.io">InputStream</A>&nbsp;instream,\r
434                   <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;resultElemType,\r
435                   <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;?&gt;...&nbsp;classes)\r
436        throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></PRE>\r
437 <DL>\r
438 <DD><DL>\r
439 \r
440 <DT><B>Throws:</B>\r
441 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/bind/JAXBException.html?is-external=true" title="class or interface in javax.xml.bind">JAXBException</A></CODE></DL>\r
442 </DD>\r
443 </DL>\r
444 <!-- ========= END OF CLASS DATA ========= -->\r
445 <HR>\r
446 \r
447 \r
448 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
449 <A NAME="navbar_bottom"><!-- --></A>\r
450 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
451 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
452 <TR>\r
453 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
454 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
455 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
456   <TR ALIGN="center" VALIGN="top">\r
457   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
458   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
459   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
460   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/RunnerConfigMarshaller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
461   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
462   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
463   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
464   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
465   </TR>\r
466 </TABLE>\r
467 </TD>\r
468 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
469 </EM>\r
470 </TD>\r
471 </TR>\r
472 \r
473 <TR>\r
474 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
475 &nbsp;<A HREF="../../../compbio/engine/conf/PropertyHelperManager.html" title="class in compbio.engine.conf"><B>PREV CLASS</B></A>&nbsp;\r
476 &nbsp;NEXT CLASS</FONT></TD>\r
477 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
478   <A HREF="../../../index.html?compbio/engine/conf/RunnerConfigMarshaller.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
479 &nbsp;<A HREF="RunnerConfigMarshaller.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
480 &nbsp;<SCRIPT type="text/javascript">\r
481   <!--\r
482   if(window==top) {\r
483     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
484   }\r
485   //-->\r
486 </SCRIPT>\r
487 <NOSCRIPT>\r
488   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
489 </NOSCRIPT>\r
490 \r
491 \r
492 </FONT></TD>\r
493 </TR>\r
494 <TR>\r
495 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
496   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
497 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
498 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
499 </TR>\r
500 </TABLE>\r
501 <A NAME="skip-navbar_bottom"></A>\r
502 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
503 \r
504 <HR>\r
505 \r
506 </BODY>\r
507 </HTML>\r