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5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
6 <TITLE>\r
7 Uses of Class compbio.metadata.Limit\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
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18         parent.document.title="Uses of Class compbio.metadata.Limit";\r
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40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
43   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
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60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/metadata/\class-useLimit.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="Limit.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
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79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <CENTER>\r
83 <H2>\r
84 <B>Uses of Class<br>compbio.metadata.Limit</B></H2>\r
85 </CENTER>\r
86 \r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
90 Packages that use <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
91 </TR>\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
95 </TR>\r
96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>\r
98 <TD>&nbsp;&nbsp;</TD>\r
99 </TR>\r
100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
101 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>\r
102 <TD>&nbsp;&nbsp;</TD>\r
103 </TR>\r
104 <TR BGCOLOR="white" CLASS="TableRowColor">\r
105 <TD><A HREF="#compbio.metadata"><B>compbio.metadata</B></A></TD>\r
106 <TD>A meta-data model for multiple sequence alignment web services 
107  Classes in this package have no dependencies to other sources in the project.&nbsp;</TD>\r
108 </TR>\r
109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
110 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>\r
111 <TD>Utilities commonly used by all runners.&nbsp;</TD>\r
112 </TR>\r
113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
114 <TD><A HREF="#compbio.runner._impl"><B>compbio.runner._impl</B></A></TD>\r
115 <TD>&nbsp;&nbsp;</TD>\r
116 </TR>\r
117 <TR BGCOLOR="white" CLASS="TableRowColor">\r
118 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
119 <TD>&nbsp;&nbsp;</TD>\r
120 </TR>\r
121 </TABLE>\r
122 &nbsp;\r
123 <P>\r
124 <A NAME="compbio.data.msa"><!-- --></A>\r
125 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
126 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
127 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
128 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
129 </TR>\r
130 </TABLE>\r
131 &nbsp;\r
132 <P>\r
133 \r
134 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
135 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
136 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
137 </TR>\r
138 <TR BGCOLOR="white" CLASS="TableRowColor">\r
139 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
140 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
141 <TD><CODE><B>Metadata.</B><B><A HREF="../../../compbio/data/msa/Metadata.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
142 \r
143 <BR>\r
144 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Get a Limit for a preset.</TD>\r
145 </TR>\r
146 </TABLE>\r
147 &nbsp;\r
148 <P>\r
149 <A NAME="compbio.data.msa.jaxws"><!-- --></A>\r
150 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
151 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
152 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
153 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>\r
154 </TR>\r
155 </TABLE>\r
156 &nbsp;\r
157 <P>\r
158 \r
159 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
160 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
161 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
162 </TR>\r
163 <TR BGCOLOR="white" CLASS="TableRowColor">\r
164 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
165 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></CODE></FONT></TD>\r
166 <TD><CODE><B>GetLimitResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitResponse.html#getReturn()">getReturn</A></B>()</CODE>\r
167 \r
168 <BR>\r
169 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
170 </TR>\r
171 </TABLE>\r
172 &nbsp;\r
173 <P>\r
174 \r
175 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
176 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
177 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> with parameters of type <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
178 </TR>\r
179 <TR BGCOLOR="white" CLASS="TableRowColor">\r
180 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
181 <CODE>&nbsp;void</CODE></FONT></TD>\r
182 <TD><CODE><B>GetLimitResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitResponse.html#setReturn(compbio.metadata.Limit)">setReturn</A></B>(<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&nbsp;_return)</CODE>\r
183 \r
184 <BR>\r
185 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
186 </TR>\r
187 </TABLE>\r
188 &nbsp;\r
189 <P>\r
190 <A NAME="compbio.engine.client"><!-- --></A>\r
191 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
192 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
193 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
194 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>\r
195 </TR>\r
196 </TABLE>\r
197 &nbsp;\r
198 <P>\r
199 \r
200 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
201 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
202 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
203 </TR>\r
204 <TR BGCOLOR="white" CLASS="TableRowColor">\r
205 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
206 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/engine/client/Executable.html" title="type parameter in Executable">T</A>&gt;</CODE></FONT></TD>\r
207 <TD><CODE><B>Executable.</B><B><A HREF="../../../compbio/engine/client/Executable.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
208 \r
209 <BR>\r
210 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
211 </TR>\r
212 <TR BGCOLOR="white" CLASS="TableRowColor">\r
213 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
214 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="type parameter in SkeletalExecutable">T</A>&gt;</CODE></FONT></TD>\r
215 <TD><CODE><B>SkeletalExecutable.</B><B><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
216 \r
217 <BR>\r
218 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
219 </TR>\r
220 <TR BGCOLOR="white" CLASS="TableRowColor">\r
221 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
222 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/engine/client/ConfExecutable.html" title="type parameter in ConfExecutable">T</A>&gt;</CODE></FONT></TD>\r
223 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
224 \r
225 <BR>\r
226 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
227 </TR>\r
228 </TABLE>\r
229 &nbsp;\r
230 <P>\r
231 <A NAME="compbio.metadata"><!-- --></A>\r
232 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
233 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
234 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
235 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A></FONT></TH>\r
236 </TR>\r
237 </TABLE>\r
238 &nbsp;\r
239 <P>\r
240 \r
241 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
242 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
243 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
244 </TR>\r
245 <TR BGCOLOR="white" CLASS="TableRowColor">\r
246 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
247 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/metadata/LimitsManager.html" title="type parameter in LimitsManager">T</A>&gt;</CODE></FONT></TD>\r
248 <TD><CODE><B>LimitsManager.</B><B><A HREF="../../../compbio/metadata/LimitsManager.html#getDefaultLimit()">getDefaultLimit</A></B>()</CODE>\r
249 \r
250 <BR>\r
251 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
252 </TR>\r
253 <TR BGCOLOR="white" CLASS="TableRowColor">\r
254 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
255 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/metadata/LimitsManager.html" title="type parameter in LimitsManager">T</A>&gt;</CODE></FONT></TD>\r
256 <TD><CODE><B>LimitsManager.</B><B><A HREF="../../../compbio/metadata/LimitsManager.html#getLimitByName(java.lang.String)">getLimitByName</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
257 \r
258 <BR>\r
259 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
260 </TR>\r
261 </TABLE>\r
262 &nbsp;\r
263 <P>\r
264 \r
265 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
266 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
267 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> that return types with arguments of type <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
268 </TR>\r
269 <TR BGCOLOR="white" CLASS="TableRowColor">\r
270 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
271 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/metadata/LimitsManager.html" title="type parameter in LimitsManager">T</A>&gt;&gt;</CODE></FONT></TD>\r
272 <TD><CODE><B>LimitsManager.</B><B><A HREF="../../../compbio/metadata/LimitsManager.html#getLimits()">getLimits</A></B>()</CODE>\r
273 \r
274 <BR>\r
275 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
276 </TR>\r
277 </TABLE>\r
278 &nbsp;\r
279 <P>\r
280 \r
281 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
282 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
283 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> with parameters of type <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
284 </TR>\r
285 <TR BGCOLOR="white" CLASS="TableRowColor">\r
286 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
287 <CODE>static&nbsp;<A HREF="../../../compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">LimitExceededException</A></CODE></FONT></TD>\r
288 <TD><CODE><B>LimitExceededException.</B><B><A HREF="../../../compbio/metadata/LimitExceededException.html#newLimitExceeded(compbio.metadata.Limit, java.util.List)">newLimitExceeded</A></B>(<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;?&gt;&nbsp;limit,\r
289                  <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;seqs)</CODE>\r
290 \r
291 <BR>\r
292 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
293 </TR>\r
294 </TABLE>\r
295 &nbsp;\r
296 <P>\r
297 <A NAME="compbio.runner"><!-- --></A>\r
298 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
299 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
300 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
301 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>\r
302 </TR>\r
303 </TABLE>\r
304 &nbsp;\r
305 <P>\r
306 \r
307 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
308 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
309 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
310 </TR>\r
311 <TR BGCOLOR="white" CLASS="TableRowColor">\r
312 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
313 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>&gt;</CODE></FONT></TD>\r
314 <TD><CODE><B>_SkeletalCommandBuilder.</B><B><A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
315 \r
316 <BR>\r
317 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
318 </TR>\r
319 </TABLE>\r
320 &nbsp;\r
321 <P>\r
322 <A NAME="compbio.runner._impl"><!-- --></A>\r
323 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
324 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
325 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
326 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></FONT></TH>\r
327 </TR>\r
328 </TABLE>\r
329 &nbsp;\r
330 <P>\r
331 \r
332 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
333 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
334 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
335 </TR>\r
336 <TR BGCOLOR="white" CLASS="TableRowColor">\r
337 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
338 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A>&gt;</CODE></FONT></TD>\r
339 <TD><CODE><B>NetNglyc.</B><B><A HREF="../../../compbio/runner/_impl/NetNglyc.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
340 \r
341 <BR>\r
342 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
343 </TR>\r
344 </TABLE>\r
345 &nbsp;\r
346 <P>\r
347 <A NAME="compbio.ws.server"><!-- --></A>\r
348 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
349 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
350 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
351 Uses of <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A> in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
352 </TR>\r
353 </TABLE>\r
354 &nbsp;\r
355 <P>\r
356 \r
357 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
358 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
359 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that return <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
360 </TR>\r
361 <TR BGCOLOR="white" CLASS="TableRowColor">\r
362 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
363 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/ws/server/GenericMetadataService.html" title="type parameter in GenericMetadataService">T</A>&gt;</CODE></FONT></TD>\r
364 <TD><CODE><B>GenericMetadataService.</B><B><A HREF="../../../compbio/ws/server/GenericMetadataService.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
365 \r
366 <BR>\r
367 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
368 </TR>\r
369 <TR BGCOLOR="white" CLASS="TableRowColor">\r
370 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
371 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>&gt;</CODE></FONT></TD>\r
372 <TD><CODE><B>ClustalWS.</B><B><A HREF="../../../compbio/ws/server/ClustalWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
373 \r
374 <BR>\r
375 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
376 </TR>\r
377 <TR BGCOLOR="white" CLASS="TableRowColor">\r
378 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
379 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>&gt;</CODE></FONT></TD>\r
380 <TD><CODE><B>MuscleWS.</B><B><A HREF="../../../compbio/ws/server/MuscleWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
381 \r
382 <BR>\r
383 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
384 </TR>\r
385 <TR BGCOLOR="white" CLASS="TableRowColor">\r
386 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
387 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</A>&gt;</CODE></FONT></TD>\r
388 <TD><CODE><B>MafftWS.</B><B><A HREF="../../../compbio/ws/server/MafftWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
389 \r
390 <BR>\r
391 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
392 </TR>\r
393 <TR BGCOLOR="white" CLASS="TableRowColor">\r
394 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
395 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>&gt;</CODE></FONT></TD>\r
396 <TD><CODE><B>TcoffeeWS.</B><B><A HREF="../../../compbio/ws/server/TcoffeeWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
397 \r
398 <BR>\r
399 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
400 </TR>\r
401 <TR BGCOLOR="white" CLASS="TableRowColor">\r
402 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
403 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>&gt;</CODE></FONT></TD>\r
404 <TD><CODE><B>ProbconsWS.</B><B><A HREF="../../../compbio/ws/server/ProbconsWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
405 \r
406 <BR>\r
407 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
408 </TR>\r
409 <TR BGCOLOR="white" CLASS="TableRowColor">\r
410 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
411 <CODE>&nbsp;<A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa">ClustalO</A>&gt;</CODE></FONT></TD>\r
412 <TD><CODE><B>ClustalOWS.</B><B><A HREF="../../../compbio/ws/server/ClustalOWS.html#getLimit(java.lang.String)">getLimit</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;presetName)</CODE>\r
413 \r
414 <BR>\r
415 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
416 </TR>\r
417 </TABLE>\r
418 &nbsp;\r
419 <P>\r
420 \r
421 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
422 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
423 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> with parameters of type <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A></FONT></TH>\r
424 </TR>\r
425 <TR BGCOLOR="white" CLASS="TableRowColor">\r
426 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
427 <CODE>static\r
428 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
429 <TR ALIGN="right" VALIGN="">\r
430 <TD NOWRAP><FONT SIZE="-1">\r
431 <CODE>&lt;T&gt; <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
432 </TR>\r
433 </TABLE>\r
434 </CODE></FONT></TD>\r
435 <TD><CODE><B>WSUtil.</B><B><A HREF="../../../compbio/ws/server/WSUtil.html#align(java.util.List, compbio.engine.client.ConfiguredExecutable, org.apache.log4j.Logger, java.lang.String, compbio.metadata.Limit)">align</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;sequences,\r
436       <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt;&nbsp;confExec,\r
437       org.apache.log4j.Logger&nbsp;logger,\r
438       <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;callingMethod,\r
439       <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;T&gt;&nbsp;limit)</CODE>\r
440 \r
441 <BR>\r
442 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
443 </TR>\r
444 <TR BGCOLOR="white" CLASS="TableRowColor">\r
445 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
446 <CODE>static\r
447 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
448 <TR ALIGN="right" VALIGN="">\r
449 <TD NOWRAP><FONT SIZE="-1">\r
450 <CODE>&lt;T&gt; <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
451 </TR>\r
452 </TABLE>\r
453 </CODE></FONT></TD>\r
454 <TD><CODE><B>WSUtil.</B><B><A HREF="../../../compbio/ws/server/WSUtil.html#analize(java.util.List, compbio.engine.client.ConfiguredExecutable, org.apache.log4j.Logger, java.lang.String, compbio.metadata.Limit)">analize</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;sequences,\r
455         <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt;&nbsp;confExec,\r
456         org.apache.log4j.Logger&nbsp;log,\r
457         <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;method,\r
458         <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>&lt;T&gt;&nbsp;limit)</CODE>\r
459 \r
460 <BR>\r
461 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
462 </TR>\r
463 </TABLE>\r
464 &nbsp;\r
465 <P>\r
466 <HR>\r
467 \r
468 \r
469 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
470 <A NAME="navbar_bottom"><!-- --></A>\r
471 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
472 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
473 <TR>\r
474 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
475 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
476 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
477   <TR ALIGN="center" VALIGN="top">\r
478   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
479   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
480   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../compbio/metadata/Limit.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
481   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
482   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
483   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
484   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
485   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
486   </TR>\r
487 </TABLE>\r
488 </TD>\r
489 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
490 </EM>\r
491 </TD>\r
492 </TR>\r
493 \r
494 <TR>\r
495 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
496 &nbsp;PREV&nbsp;\r
497 &nbsp;NEXT</FONT></TD>\r
498 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
499   <A HREF="../../../index.html?compbio/metadata/\class-useLimit.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
500 &nbsp;<A HREF="Limit.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
501 &nbsp;<SCRIPT type="text/javascript">\r
502   <!--\r
503   if(window==top) {\r
504     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
505   }\r
506   //-->\r
507 </SCRIPT>\r
508 <NOSCRIPT>\r
509   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
510 </NOSCRIPT>\r
511 \r
512 \r
513 </FONT></TD>\r
514 </TR>\r
515 </TABLE>\r
516 <A NAME="skip-navbar_bottom"></A>\r
517 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
518 \r
519 <HR>\r
520 \r
521 </BODY>\r
522 </HTML>\r