website/full_javadoc/compbio/metadata/class-use/LimitsManager.html

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   7 Uses of Class compbio.metadata.LimitsManager\r
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  83 <H2>\r
  84 <B>Uses of Class<br>compbio.metadata.LimitsManager</B></H2>\r
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  86 \r
  87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  90 Packages that use <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
  94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>\r
  98 <TD>&nbsp;&nbsp;</TD>\r
  99 </TR>\r
 100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 101 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>\r
 102 <TD>&nbsp;&nbsp;</TD>\r
 103 </TR>\r
 104 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 105 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>\r
 106 <TD>Utilities commonly used by all runners.&nbsp;</TD>\r
 107 </TR>\r
 108 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 109 <TD><A HREF="#compbio.runner._impl"><B>compbio.runner._impl</B></A></TD>\r
 110 <TD>&nbsp;&nbsp;</TD>\r
 111 </TR>\r
 112 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 113 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
 114 <TD>&nbsp;&nbsp;</TD>\r
 115 </TR>\r
 116 </TABLE>\r
 117 &nbsp;\r
 118 <P>\r
 119 <A NAME="compbio.data.msa"><!-- --></A>\r
 120 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 121 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 122 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 123 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
 124 </TR>\r
 125 </TABLE>\r
 126 &nbsp;\r
 127 <P>\r
 128 \r
 129 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 130 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 131 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 132 </TR>\r
 133 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 134 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 135 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
 136 <TD><CODE><B>Metadata.</B><B><A HREF="../../../compbio/data/msa/Metadata.html#getLimits()">getLimits</A></B>()</CODE>\r
 137 \r
 138 <BR>\r
 139 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;List Limits supported by a web service.</TD>\r
 140 </TR>\r
 141 </TABLE>\r
 142 &nbsp;\r
 143 <P>\r
 144 <A NAME="compbio.data.msa.jaxws"><!-- --></A>\r
 145 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 146 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 147 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 148 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>\r
 149 </TR>\r
 150 </TABLE>\r
 151 &nbsp;\r
 152 <P>\r
 153 \r
 154 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 155 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 156 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 157 </TR>\r
 158 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 159 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 160 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></CODE></FONT></TD>\r
 161 <TD><CODE><B>GetLimitsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitsResponse.html#getReturn()">getReturn</A></B>()</CODE>\r
 162 \r
 163 <BR>\r
 164 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 165 </TR>\r
 166 </TABLE>\r
 167 &nbsp;\r
 168 <P>\r
 169 \r
 170 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 171 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 172 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> with parameters of type <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 173 </TR>\r
 174 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 175 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 176 <CODE>&nbsp;void</CODE></FONT></TD>\r
 177 <TD><CODE><B>GetLimitsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitsResponse.html#setReturn(compbio.metadata.LimitsManager)">setReturn</A></B>(<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&nbsp;_return)</CODE>\r
 178 \r
 179 <BR>\r
 180 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 181 </TR>\r
 182 </TABLE>\r
 183 &nbsp;\r
 184 <P>\r
 185 <A NAME="compbio.engine.client"><!-- --></A>\r
 186 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 187 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 188 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 189 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>\r
 190 </TR>\r
 191 </TABLE>\r
 192 &nbsp;\r
 193 <P>\r
 194 \r
 195 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 196 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 197 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 198 </TR>\r
 199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 200 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 201 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/engine/client/Executable.html" title="type parameter in Executable">T</A>&gt;</CODE></FONT></TD>\r
 202 <TD><CODE><B>Executable.</B><B><A HREF="../../../compbio/engine/client/Executable.html#getLimits()">getLimits</A></B>()</CODE>\r
 203 \r
 204 <BR>\r
 205 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 206 </TR>\r
 207 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 208 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 209 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="type parameter in SkeletalExecutable">T</A>&gt;</CODE></FONT></TD>\r
 210 <TD><CODE><B>SkeletalExecutable.</B><B><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getLimits()">getLimits</A></B>()</CODE>\r
 211 \r
 212 <BR>\r
 213 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 214 </TR>\r
 215 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 216 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 217 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/engine/client/ConfExecutable.html" title="type parameter in ConfExecutable">T</A>&gt;</CODE></FONT></TD>\r
 218 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getLimits()">getLimits</A></B>()</CODE>\r
 219 \r
 220 <BR>\r
 221 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 222 </TR>\r
 223 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 224 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 225 <CODE>static\r
 226 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 227 <TR ALIGN="right" VALIGN="">\r
 228 <TD NOWRAP><FONT SIZE="-1">\r
 229 <CODE>&lt;T&gt; <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;T&gt;</CODE></FONT></TD>\r
 230 </TR>\r
 231 </TABLE>\r
 232 </CODE></FONT></TD>\r
 233 <TD><CODE><B>Util.</B><B><A HREF="../../../compbio/engine/client/Util.html#getLimits(java.lang.Class)">getLimits</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;T&gt;&nbsp;clazz)</CODE>\r
 234 \r
 235 <BR>\r
 236 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;For now just assume that all parameters which came in needs setting it
 237  will be a client responsibility to prepare RunnerConfig object then</TD>\r
 238 </TR>\r
 239 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 240 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 241 <CODE>static\r
 242 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 243 <TR ALIGN="right" VALIGN="">\r
 244 <TD NOWRAP><FONT SIZE="-1">\r
 245 <CODE>&lt;V&gt; <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;V&gt;</CODE></FONT></TD>\r
 246 </TR>\r
 247 </TABLE>\r
 248 </CODE></FONT></TD>\r
 249 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getRunnerLimits(java.lang.Class)">getRunnerLimits</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;V&gt;&nbsp;clazz)</CODE>\r
 250 \r
 251 <BR>\r
 252 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This method should be executed once and result of its execution reused.</TD>\r
 253 </TR>\r
 254 </TABLE>\r
 255 &nbsp;\r
 256 <P>\r
 257 <A NAME="compbio.runner"><!-- --></A>\r
 258 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 259 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 260 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 261 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>\r
 262 </TR>\r
 263 </TABLE>\r
 264 &nbsp;\r
 265 <P>\r
 266 \r
 267 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 268 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 269 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 270 </TR>\r
 271 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 272 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 273 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>&gt;</CODE></FONT></TD>\r
 274 <TD><CODE><B>_SkeletalCommandBuilder.</B><B><A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getLimits()">getLimits</A></B>()</CODE>\r
 275 \r
 276 <BR>\r
 277 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>\r
 278 </TR>\r
 279 </TABLE>\r
 280 &nbsp;\r
 281 <P>\r
 282 <A NAME="compbio.runner._impl"><!-- --></A>\r
 283 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 284 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 285 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 286 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></FONT></TH>\r
 287 </TR>\r
 288 </TABLE>\r
 289 &nbsp;\r
 290 <P>\r
 291 \r
 292 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 293 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 294 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 295 </TR>\r
 296 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 297 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 298 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A>&gt;</CODE></FONT></TD>\r
 299 <TD><CODE><B>NetNglyc.</B><B><A HREF="../../../compbio/runner/_impl/NetNglyc.html#getLimits()">getLimits</A></B>()</CODE>\r
 300 \r
 301 <BR>\r
 302 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 303 </TR>\r
 304 </TABLE>\r
 305 &nbsp;\r
 306 <P>\r
 307 <A NAME="compbio.ws.server"><!-- --></A>\r
 308 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 309 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 310 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 311 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
 312 </TR>\r
 313 </TABLE>\r
 314 &nbsp;\r
 315 <P>\r
 316 \r
 317 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 318 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 319 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 320 </TR>\r
 321 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 322 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 323 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/ws/server/GenericMetadataService.html" title="type parameter in GenericMetadataService">T</A>&gt;</CODE></FONT></TD>\r
 324 <TD><CODE><B>GenericMetadataService.</B><B><A HREF="../../../compbio/ws/server/GenericMetadataService.html#getLimits()">getLimits</A></B>()</CODE>\r
 325 \r
 326 <BR>\r
 327 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 328 </TR>\r
 329 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 330 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 331 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>&gt;</CODE></FONT></TD>\r
 332 <TD><CODE><B>ClustalWS.</B><B><A HREF="../../../compbio/ws/server/ClustalWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 333 \r
 334 <BR>\r
 335 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 336 </TR>\r
 337 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 338 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 339 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>&gt;</CODE></FONT></TD>\r
 340 <TD><CODE><B>MuscleWS.</B><B><A HREF="../../../compbio/ws/server/MuscleWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 341 \r
 342 <BR>\r
 343 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 344 </TR>\r
 345 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 346 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 347 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</A>&gt;</CODE></FONT></TD>\r
 348 <TD><CODE><B>MafftWS.</B><B><A HREF="../../../compbio/ws/server/MafftWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 349 \r
 350 <BR>\r
 351 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 352 </TR>\r
 353 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 354 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 355 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>&gt;</CODE></FONT></TD>\r
 356 <TD><CODE><B>TcoffeeWS.</B><B><A HREF="../../../compbio/ws/server/TcoffeeWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 357 \r
 358 <BR>\r
 359 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 360 </TR>\r
 361 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 362 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 363 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>&gt;</CODE></FONT></TD>\r
 364 <TD><CODE><B>ProbconsWS.</B><B><A HREF="../../../compbio/ws/server/ProbconsWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 365 \r
 366 <BR>\r
 367 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 368 </TR>\r
 369 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 370 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 371 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa">ClustalO</A>&gt;</CODE></FONT></TD>\r
 372 <TD><CODE><B>ClustalOWS.</B><B><A HREF="../../../compbio/ws/server/ClustalOWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 373 \r
 374 <BR>\r
 375 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 376 </TR>\r
 377 </TABLE>\r
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 379 <P>\r
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