website/full_javadoc/compbio/metadata/class-use/LimitsManager.html

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   7 Uses of Class compbio.metadata.LimitsManager\r
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  83 <H2>\r
  84 <B>Uses of Class<br>compbio.metadata.LimitsManager</B></H2>\r
  85 </CENTER>\r
  86 \r
  87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  90 Packages that use <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
  94 <TD>&nbsp;&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>\r
  98 <TD>&nbsp;&nbsp;</TD>\r
  99 </TR>\r
 100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 101 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>\r
 102 <TD>Classes and interfaces representing an input for engines.&nbsp;</TD>\r
 103 </TR>\r
 104 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 105 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>\r
 106 <TD>Utilities commonly used by all runners.&nbsp;</TD>\r
 107 </TR>\r
 108 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 109 <TD><A HREF="#compbio.runner._impl"><B>compbio.runner._impl</B></A></TD>\r
 110 <TD>&nbsp;&nbsp;</TD>\r
 111 </TR>\r
 112 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 113 <TD><A HREF="#compbio.runner.msa"><B>compbio.runner.msa</B></A></TD>\r
 114 <TD>Wrappers for native executables for multiple sequence alignment (msa)&nbsp;</TD>\r
 115 </TR>\r
 116 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 117 <TD><A HREF="#compbio.runner.psiblast"><B>compbio.runner.psiblast</B></A></TD>\r
 118 <TD>&nbsp;&nbsp;</TD>\r
 119 </TR>\r
 120 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 121 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
 122 <TD>&nbsp;&nbsp;</TD>\r
 123 </TR>\r
 124 </TABLE>\r
 125 &nbsp;\r
 126 <P>\r
 127 <A NAME="compbio.data.msa"><!-- --></A>\r
 128 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 129 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 130 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 131 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
 132 </TR>\r
 133 </TABLE>\r
 134 &nbsp;\r
 135 <P>\r
 136 \r
 137 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 138 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 139 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 140 </TR>\r
 141 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 142 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 143 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</A>&gt;</CODE></FONT></TD>\r
 144 <TD><CODE><B>MsaWS.</B><B><A HREF="../../../compbio/data/msa/MsaWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 145 \r
 146 <BR>\r
 147 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;List Limits supported by a web service.</TD>\r
 148 </TR>\r
 149 </TABLE>\r
 150 &nbsp;\r
 151 <P>\r
 152 <A NAME="compbio.data.msa.jaxws"><!-- --></A>\r
 153 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 154 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 155 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 156 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>\r
 157 </TR>\r
 158 </TABLE>\r
 159 &nbsp;\r
 160 <P>\r
 161 \r
 162 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 163 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 164 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 165 </TR>\r
 166 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 167 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 168 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></CODE></FONT></TD>\r
 169 <TD><CODE><B>GetLimitsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitsResponse.html#getReturn()">getReturn</A></B>()</CODE>\r
 170 \r
 171 <BR>\r
 172 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 173 </TR>\r
 174 </TABLE>\r
 175 &nbsp;\r
 176 <P>\r
 177 \r
 178 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 179 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 180 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> with parameters of type <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 181 </TR>\r
 182 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 183 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 184 <CODE>&nbsp;void</CODE></FONT></TD>\r
 185 <TD><CODE><B>GetLimitsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetLimitsResponse.html#setReturn(compbio.metadata.LimitsManager)">setReturn</A></B>(<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&nbsp;_return)</CODE>\r
 186 \r
 187 <BR>\r
 188 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 189 </TR>\r
 190 </TABLE>\r
 191 &nbsp;\r
 192 <P>\r
 193 <A NAME="compbio.engine.client"><!-- --></A>\r
 194 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 195 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 196 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 197 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>\r
 198 </TR>\r
 199 </TABLE>\r
 200 &nbsp;\r
 201 <P>\r
 202 \r
 203 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 204 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 205 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 206 </TR>\r
 207 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 208 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 209 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/engine/client/Executable.html" title="type parameter in Executable">T</A>&gt;</CODE></FONT></TD>\r
 210 <TD><CODE><B>Executable.</B><B><A HREF="../../../compbio/engine/client/Executable.html#getLimits()">getLimits</A></B>()</CODE>\r
 211 \r
 212 <BR>\r
 213 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 214 </TR>\r
 215 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 216 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 217 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/engine/client/ConfExecutable.html" title="type parameter in ConfExecutable">T</A>&gt;</CODE></FONT></TD>\r
 218 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getLimits()">getLimits</A></B>()</CODE>\r
 219 \r
 220 <BR>\r
 221 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 222 </TR>\r
 223 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 224 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 225 <CODE>static\r
 226 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 227 <TR ALIGN="right" VALIGN="">\r
 228 <TD NOWRAP><FONT SIZE="-1">\r
 229 <CODE>&lt;V&gt; <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;V&gt;</CODE></FONT></TD>\r
 230 </TR>\r
 231 </TABLE>\r
 232 </CODE></FONT></TD>\r
 233 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getRunnerLimits(java.lang.Class)">getRunnerLimits</A></B>(java.lang.Class&lt;? extends <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;V&gt;&gt;&nbsp;clazz)</CODE>\r
 234 \r
 235 <BR>\r
 236 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This method should be executed once and result of its execution reused.</TD>\r
 237 </TR>\r
 238 </TABLE>\r
 239 &nbsp;\r
 240 <P>\r
 241 <A NAME="compbio.runner"><!-- --></A>\r
 242 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 243 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 244 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 245 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>\r
 246 </TR>\r
 247 </TABLE>\r
 248 &nbsp;\r
 249 <P>\r
 250 \r
 251 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 252 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 253 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 254 </TR>\r
 255 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 256 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 257 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>&gt;</CODE></FONT></TD>\r
 258 <TD><CODE><B>_SkeletalCommandBuilder.</B><B><A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getLimits()">getLimits</A></B>()</CODE>\r
 259 \r
 260 <BR>\r
 261 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 262 </TR>\r
 263 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 264 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 265 <CODE>static\r
 266 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
 267 <TR ALIGN="right" VALIGN="">\r
 268 <TD NOWRAP><FONT SIZE="-1">\r
 269 <CODE>&lt;T&gt; <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;T&gt;</CODE></FONT></TD>\r
 270 </TR>\r
 271 </TABLE>\r
 272 </CODE></FONT></TD>\r
 273 <TD><CODE><B>Util.</B><B><A HREF="../../../compbio/runner/Util.html#getLimits(java.lang.Class)">getLimits</A></B>(java.lang.Class&lt;? extends <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&gt;&nbsp;clazz)</CODE>\r
 274 \r
 275 <BR>\r
 276 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;For now just assume that all parameters which came in needs setting it
 277  will be a client responsibility to prepare RunnerConfig object then</TD>\r
 278 </TR>\r
 279 </TABLE>\r
 280 &nbsp;\r
 281 <P>\r
 282 <A NAME="compbio.runner._impl"><!-- --></A>\r
 283 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 284 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 285 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 286 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></FONT></TH>\r
 287 </TR>\r
 288 </TABLE>\r
 289 &nbsp;\r
 290 <P>\r
 291 \r
 292 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 293 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 294 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 295 </TR>\r
 296 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 297 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 298 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A>&gt;</CODE></FONT></TD>\r
 299 <TD><CODE><B>NetNglyc.</B><B><A HREF="../../../compbio/runner/_impl/NetNglyc.html#getLimits()">getLimits</A></B>()</CODE>\r
 300 \r
 301 <BR>\r
 302 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 303 </TR>\r
 304 </TABLE>\r
 305 &nbsp;\r
 306 <P>\r
 307 <A NAME="compbio.runner.msa"><!-- --></A>\r
 308 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 309 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 310 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 311 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>\r
 312 </TR>\r
 313 </TABLE>\r
 314 &nbsp;\r
 315 <P>\r
 316 \r
 317 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 318 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 319 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 320 </TR>\r
 321 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 322 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 323 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>&gt;</CODE></FONT></TD>\r
 324 <TD><CODE><B>Tcoffee.</B><B><A HREF="../../../compbio/runner/msa/Tcoffee.html#getLimits()">getLimits</A></B>()</CODE>\r
 325 \r
 326 <BR>\r
 327 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 328 </TR>\r
 329 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 330 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 331 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>&gt;</CODE></FONT></TD>\r
 332 <TD><CODE><B>ClustalW.</B><B><A HREF="../../../compbio/runner/msa/ClustalW.html#getLimits()">getLimits</A></B>()</CODE>\r
 333 \r
 334 <BR>\r
 335 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 336 </TR>\r
 337 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 338 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 339 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>&gt;</CODE></FONT></TD>\r
 340 <TD><CODE><B>Probcons.</B><B><A HREF="../../../compbio/runner/msa/Probcons.html#getLimits()">getLimits</A></B>()</CODE>\r
 341 \r
 342 <BR>\r
 343 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 344 </TR>\r
 345 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 346 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 347 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>&gt;</CODE></FONT></TD>\r
 348 <TD><CODE><B>Muscle.</B><B><A HREF="../../../compbio/runner/msa/Muscle.html#getLimits()">getLimits</A></B>()</CODE>\r
 349 \r
 350 <BR>\r
 351 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 352 </TR>\r
 353 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 354 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 355 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</A>&gt;</CODE></FONT></TD>\r
 356 <TD><CODE><B>Mafft.</B><B><A HREF="../../../compbio/runner/msa/Mafft.html#getLimits()">getLimits</A></B>()</CODE>\r
 357 \r
 358 <BR>\r
 359 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 360 </TR>\r
 361 </TABLE>\r
 362 &nbsp;\r
 363 <P>\r
 364 <A NAME="compbio.runner.psiblast"><!-- --></A>\r
 365 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 366 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 367 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 368 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/runner/psiblast/package-summary.html">compbio.runner.psiblast</A></FONT></TH>\r
 369 </TR>\r
 370 </TABLE>\r
 371 &nbsp;\r
 372 <P>\r
 373 \r
 374 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 375 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 376 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/psiblast/package-summary.html">compbio.runner.psiblast</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 377 </TR>\r
 378 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 379 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 380 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/psiblast/PsiBlast.html" title="class in compbio.runner.psiblast">PsiBlast</A>&gt;</CODE></FONT></TD>\r
 381 <TD><CODE><B>PsiBlast.</B><B><A HREF="../../../compbio/runner/psiblast/PsiBlast.html#getLimits()">getLimits</A></B>()</CODE>\r
 382 \r
 383 <BR>\r
 384 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 385 </TR>\r
 386 </TABLE>\r
 387 &nbsp;\r
 388 <P>\r
 389 <A NAME="compbio.ws.server"><!-- --></A>\r
 390 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 391 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 392 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 393 Uses of <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A> in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
 394 </TR>\r
 395 </TABLE>\r
 396 &nbsp;\r
 397 <P>\r
 398 \r
 399 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 400 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
 401 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that return <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A></FONT></TH>\r
 402 </TR>\r
 403 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 404 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 405 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>&gt;</CODE></FONT></TD>\r
 406 <TD><CODE><B>TcoffeeWS.</B><B><A HREF="../../../compbio/ws/server/TcoffeeWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 407 \r
 408 <BR>\r
 409 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 410 </TR>\r
 411 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 412 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 413 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>&gt;</CODE></FONT></TD>\r
 414 <TD><CODE><B>ProbconsWS.</B><B><A HREF="../../../compbio/ws/server/ProbconsWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 415 \r
 416 <BR>\r
 417 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 418 </TR>\r
 419 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 420 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 421 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>&gt;</CODE></FONT></TD>\r
 422 <TD><CODE><B>MuscleWS.</B><B><A HREF="../../../compbio/ws/server/MuscleWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 423 \r
 424 <BR>\r
 425 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 426 </TR>\r
 427 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 428 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 429 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</A>&gt;</CODE></FONT></TD>\r
 430 <TD><CODE><B>MafftWS.</B><B><A HREF="../../../compbio/ws/server/MafftWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 431 \r
 432 <BR>\r
 433 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 434 </TR>\r
 435 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 436 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 437 <CODE>&nbsp;<A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>&gt;</CODE></FONT></TD>\r
 438 <TD><CODE><B>ClustalWS.</B><B><A HREF="../../../compbio/ws/server/ClustalWS.html#getLimits()">getLimits</A></B>()</CODE>\r
 439 \r
 440 <BR>\r
 441 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 442 </TR>\r
 443 </TABLE>\r
 444 &nbsp;\r
 445 <P>\r
 446 <HR>\r
 447 \r
 448 \r
 449 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 450 <A NAME="navbar_bottom"><!-- --></A>\r
 451 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 452 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 453 <TR>\r
 454 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 455 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 456 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 457   <TR ALIGN="center" VALIGN="top">\r
 458   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 459   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 460   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../compbio/metadata/LimitsManager.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
 461   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
 462   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 463   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 464   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 465   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 466   </TR>\r
 467 </TABLE>\r
 468 </TD>\r
 469 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 470 </EM>\r
 471 </TD>\r
 472 </TR>\r
 473 \r
 474 <TR>\r
 475 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 476 &nbsp;PREV&nbsp;\r
 477 &nbsp;NEXT</FONT></TD>\r
 478 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 479   <A HREF="../../../index.html?compbio/metadata/\class-useLimitsManager.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 480 &nbsp;<A HREF="LimitsManager.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 481 &nbsp;<SCRIPT type="text/javascript">\r
 482   <!--\r
 483   if(window==top) {\r
 484     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 485   }\r
 486   //-->\r
 487 </SCRIPT>\r
 488 <NOSCRIPT>\r
 489   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 490 </NOSCRIPT>\r
 491 \r
 492 \r
 493 </FONT></TD>\r
 494 </TR>\r
 495 </TABLE>\r
 496 <A NAME="skip-navbar_bottom"></A>\r
 497 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 498 \r
 499 <HR>\r
 500 \r
 501 </BODY>\r
 502 </HTML>\r