updated javadoc
[jabaws.git] / website / full_javadoc / compbio / metadata / class-use / PresetManager.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
6 <TITLE>\r
7 Uses of Class compbio.metadata.PresetManager\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="Uses of Class compbio.metadata.PresetManager";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
43   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;PREV&nbsp;\r
59 &nbsp;NEXT</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/metadata/\class-usePresetManager.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="PresetManager.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <CENTER>\r
83 <H2>\r
84 <B>Uses of Class<br>compbio.metadata.PresetManager</B></H2>\r
85 </CENTER>\r
86 \r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
90 Packages that use <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
91 </TR>\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
95 </TR>\r
96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>\r
98 <TD>&nbsp;&nbsp;</TD>\r
99 </TR>\r
100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
101 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>\r
102 <TD>&nbsp;&nbsp;</TD>\r
103 </TR>\r
104 <TR BGCOLOR="white" CLASS="TableRowColor">\r
105 <TD><A HREF="#compbio.metadata"><B>compbio.metadata</B></A></TD>\r
106 <TD>A meta-data model for multiple sequence alignment web services 
107  Classes in this package have no dependencies to other sources in the project.&nbsp;</TD>\r
108 </TR>\r
109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
110 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>\r
111 <TD>Utilities commonly used by all runners.&nbsp;</TD>\r
112 </TR>\r
113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
114 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
115 <TD>&nbsp;&nbsp;</TD>\r
116 </TR>\r
117 </TABLE>\r
118 &nbsp;\r
119 <P>\r
120 <A NAME="compbio.data.msa"><!-- --></A>\r
121 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
122 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
123 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
124 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
125 </TR>\r
126 </TABLE>\r
127 &nbsp;\r
128 <P>\r
129 \r
130 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
131 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
132 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> that return <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
133 </TR>\r
134 <TR BGCOLOR="white" CLASS="TableRowColor">\r
135 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
136 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>&gt;</CODE></FONT></TD>\r
137 <TD><CODE><B>Metadata.</B><B><A HREF="../../../compbio/data/msa/Metadata.html#getPresets()">getPresets</A></B>()</CODE>\r
138 \r
139 <BR>\r
140 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Get presets supported by a web service</TD>\r
141 </TR>\r
142 </TABLE>\r
143 &nbsp;\r
144 <P>\r
145 <A NAME="compbio.data.msa.jaxws"><!-- --></A>\r
146 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
147 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
148 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
149 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>\r
150 </TR>\r
151 </TABLE>\r
152 &nbsp;\r
153 <P>\r
154 \r
155 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
156 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
157 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> that return <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
158 </TR>\r
159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
161 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></CODE></FONT></TD>\r
162 <TD><CODE><B>GetPresetsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetPresetsResponse.html#getReturn()">getReturn</A></B>()</CODE>\r
163 \r
164 <BR>\r
165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
166 </TR>\r
167 </TABLE>\r
168 &nbsp;\r
169 <P>\r
170 \r
171 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
172 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
173 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A> with parameters of type <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
174 </TR>\r
175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
177 <CODE>&nbsp;void</CODE></FONT></TD>\r
178 <TD><CODE><B>GetPresetsResponse.</B><B><A HREF="../../../compbio/data/msa/jaxws/GetPresetsResponse.html#setReturn(compbio.metadata.PresetManager)">setReturn</A></B>(<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&nbsp;_return)</CODE>\r
179 \r
180 <BR>\r
181 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
182 </TR>\r
183 </TABLE>\r
184 &nbsp;\r
185 <P>\r
186 <A NAME="compbio.engine.client"><!-- --></A>\r
187 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
188 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
189 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
190 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>\r
191 </TR>\r
192 </TABLE>\r
193 &nbsp;\r
194 <P>\r
195 \r
196 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
197 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
198 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that return <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
199 </TR>\r
200 <TR BGCOLOR="white" CLASS="TableRowColor">\r
201 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
202 <CODE>static\r
203 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
204 <TR ALIGN="right" VALIGN="">\r
205 <TD NOWRAP><FONT SIZE="-1">\r
206 <CODE>&lt;V&gt; <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;V&gt;</CODE></FONT></TD>\r
207 </TR>\r
208 </TABLE>\r
209 </CODE></FONT></TD>\r
210 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getRunnerPresets(java.lang.Class)">getRunnerPresets</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;? extends <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;V&gt;&gt;&nbsp;clazz)</CODE>\r
211 \r
212 <BR>\r
213 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
214 </TR>\r
215 </TABLE>\r
216 &nbsp;\r
217 <P>\r
218 <A NAME="compbio.metadata"><!-- --></A>\r
219 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
220 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
221 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
222 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A></FONT></TH>\r
223 </TR>\r
224 </TABLE>\r
225 &nbsp;\r
226 <P>\r
227 \r
228 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
229 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
230 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> with parameters of type <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
231 </TR>\r
232 <TR BGCOLOR="white" CLASS="TableRowColor">\r
233 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
234 <CODE>&nbsp;void</CODE></FONT></TD>\r
235 <TD><CODE><B>LimitsManager.</B><B><A HREF="../../../compbio/metadata/LimitsManager.html#validate(compbio.metadata.PresetManager)">validate</A></B>(<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/metadata/LimitsManager.html" title="type parameter in LimitsManager">T</A>&gt;&nbsp;presets)</CODE>\r
236 \r
237 <BR>\r
238 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Validate Limits</TD>\r
239 </TR>\r
240 </TABLE>\r
241 &nbsp;\r
242 <P>\r
243 <A NAME="compbio.runner"><!-- --></A>\r
244 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
245 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
246 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
247 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>\r
248 </TR>\r
249 </TABLE>\r
250 &nbsp;\r
251 <P>\r
252 \r
253 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
254 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
255 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> that return <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
256 </TR>\r
257 <TR BGCOLOR="white" CLASS="TableRowColor">\r
258 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
259 <CODE>static\r
260 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
261 <TR ALIGN="right" VALIGN="">\r
262 <TD NOWRAP><FONT SIZE="-1">\r
263 <CODE>&lt;T&gt; <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;T&gt;</CODE></FONT></TD>\r
264 </TR>\r
265 </TABLE>\r
266 </CODE></FONT></TD>\r
267 <TD><CODE><B>Util.</B><B><A HREF="../../../compbio/runner/Util.html#getPresets(java.lang.Class)">getPresets</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A>&lt;? extends <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&gt;&nbsp;clazz)</CODE>\r
268 \r
269 <BR>\r
270 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
271 </TR>\r
272 </TABLE>\r
273 &nbsp;\r
274 <P>\r
275 <A NAME="compbio.ws.server"><!-- --></A>\r
276 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
277 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
278 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
279 Uses of <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A> in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
280 </TR>\r
281 </TABLE>\r
282 &nbsp;\r
283 <P>\r
284 \r
285 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
286 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
287 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that return <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A></FONT></TH>\r
288 </TR>\r
289 <TR BGCOLOR="white" CLASS="TableRowColor">\r
290 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
291 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/ws/server/GenericMetadataService.html" title="type parameter in GenericMetadataService">T</A>&gt;</CODE></FONT></TD>\r
292 <TD><CODE><B>GenericMetadataService.</B><B><A HREF="../../../compbio/ws/server/GenericMetadataService.html#getPresets()">getPresets</A></B>()</CODE>\r
293 \r
294 <BR>\r
295 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
296 </TR>\r
297 <TR BGCOLOR="white" CLASS="TableRowColor">\r
298 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
299 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>&gt;</CODE></FONT></TD>\r
300 <TD><CODE><B>ClustalWS.</B><B><A HREF="../../../compbio/ws/server/ClustalWS.html#getPresets()">getPresets</A></B>()</CODE>\r
301 \r
302 <BR>\r
303 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
304 </TR>\r
305 <TR BGCOLOR="white" CLASS="TableRowColor">\r
306 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
307 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>&gt;</CODE></FONT></TD>\r
308 <TD><CODE><B>MuscleWS.</B><B><A HREF="../../../compbio/ws/server/MuscleWS.html#getPresets()">getPresets</A></B>()</CODE>\r
309 \r
310 <BR>\r
311 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
312 </TR>\r
313 <TR BGCOLOR="white" CLASS="TableRowColor">\r
314 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
315 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</A>&gt;</CODE></FONT></TD>\r
316 <TD><CODE><B>MafftWS.</B><B><A HREF="../../../compbio/ws/server/MafftWS.html#getPresets()">getPresets</A></B>()</CODE>\r
317 \r
318 <BR>\r
319 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
320 </TR>\r
321 <TR BGCOLOR="white" CLASS="TableRowColor">\r
322 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
323 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>&gt;</CODE></FONT></TD>\r
324 <TD><CODE><B>TcoffeeWS.</B><B><A HREF="../../../compbio/ws/server/TcoffeeWS.html#getPresets()">getPresets</A></B>()</CODE>\r
325 \r
326 <BR>\r
327 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
328 </TR>\r
329 <TR BGCOLOR="white" CLASS="TableRowColor">\r
330 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
331 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>&gt;</CODE></FONT></TD>\r
332 <TD><CODE><B>ProbconsWS.</B><B><A HREF="../../../compbio/ws/server/ProbconsWS.html#getPresets()">getPresets</A></B>()</CODE>\r
333 \r
334 <BR>\r
335 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
336 </TR>\r
337 <TR BGCOLOR="white" CLASS="TableRowColor">\r
338 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
339 <CODE>&nbsp;<A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>&lt;<A HREF="../../../compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa">ClustalO</A>&gt;</CODE></FONT></TD>\r
340 <TD><CODE><B>ClustalOWS.</B><B><A HREF="../../../compbio/ws/server/ClustalOWS.html#getPresets()">getPresets</A></B>()</CODE>\r
341 \r
342 <BR>\r
343 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
344 </TR>\r
345 </TABLE>\r
346 &nbsp;\r
347 <P>\r
348 <HR>\r
349 \r
350 \r
351 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
352 <A NAME="navbar_bottom"><!-- --></A>\r
353 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
354 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
355 <TR>\r
356 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
357 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
358 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
359   <TR ALIGN="center" VALIGN="top">\r
360   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
361   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
362   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../compbio/metadata/PresetManager.html" title="class in compbio.metadata"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
363   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
364   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
365   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
366   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
367   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
368   </TR>\r
369 </TABLE>\r
370 </TD>\r
371 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
372 </EM>\r
373 </TD>\r
374 </TR>\r
375 \r
376 <TR>\r
377 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
378 &nbsp;PREV&nbsp;\r
379 &nbsp;NEXT</FONT></TD>\r
380 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
381   <A HREF="../../../index.html?compbio/metadata/\class-usePresetManager.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
382 &nbsp;<A HREF="PresetManager.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
383 &nbsp;<SCRIPT type="text/javascript">\r
384   <!--\r
385   if(window==top) {\r
386     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
387   }\r
388   //-->\r
389 </SCRIPT>\r
390 <NOSCRIPT>\r
391   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
392 </NOSCRIPT>\r
393 \r
394 \r
395 </FONT></TD>\r
396 </TR>\r
397 </TABLE>\r
398 <A NAME="skip-navbar_bottom"></A>\r
399 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
400 \r
401 <HR>\r
402 \r
403 </BODY>\r
404 </HTML>\r