updated javadoc
[jabaws.git] / website / full_javadoc / compbio / pipeline / _jpred / Hit.html
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4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
6 <TITLE>\r
7 Hit\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
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13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="Hit";\r
19     }\r
20 }\r
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26 \r
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30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
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40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
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43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/Hit.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
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55 \r
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58 &nbsp;<A HREF="../../../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>PREV CLASS</B></A>&nbsp;\r
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79   SUMMARY:&nbsp;<A HREF="#nested_class_summary">NESTED</A>&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
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89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.pipeline._jpred</FONT>\r
92 <BR>\r
93 Class Hit</H2>\r
94 <PRE>\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.pipeline._jpred.Hit</B>\r
97 </PRE>\r
98 <HR>\r
99 <DL>\r
100 <DT><PRE>public class <B>Hit</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
101 </PRE>\r
102 \r
103 <P>\r
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105 \r
106 <P>\r
107 <!-- ======== NESTED CLASS SUMMARY ======== -->\r
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113 <B>Nested Class Summary</B></FONT></TH>\r
114 </TR>\r
115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
116 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
117 <CODE>static&nbsp;class</CODE></FONT></TD>\r
118 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred">Hit.EvalueComporator</A></B></CODE>\r
119 \r
120 <BR>\r
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122 </TR>\r
123 <TR BGCOLOR="white" CLASS="TableRowColor">\r
124 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
125 <CODE>static&nbsp;class</CODE></FONT></TD>\r
126 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred">Hit.NumberComporator</A></B></CODE>\r
127 \r
128 <BR>\r
129 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
130 </TR>\r
131 </TABLE>\r
132 &nbsp;\r
133 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
134 \r
135 <A NAME="constructor_summary"><!-- --></A>\r
136 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
137 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
138 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
139 <B>Constructor Summary</B></FONT></TH>\r
140 </TR>\r
141 <TR BGCOLOR="white" CLASS="TableRowColor">\r
142 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.html#Hit()">Hit</A></B>()</CODE>\r
143 \r
144 <BR>\r
145 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
146 </TR>\r
147 </TABLE>\r
148 &nbsp;\r
149 <!-- ========== METHOD SUMMARY =========== -->\r
150 \r
151 <A NAME="method_summary"><!-- --></A>\r
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155 <B>Method Summary</B></FONT></TH>\r
156 </TR>\r
157 <TR BGCOLOR="white" CLASS="TableRowColor">\r
158 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
159 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
160 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
161 \r
162 <BR>\r
163 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
164 </TR>\r
165 <TR BGCOLOR="white" CLASS="TableRowColor">\r
166 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
167 <CODE>&nbsp;int</CODE></FONT></TD>\r
168 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.html#hashCode()">hashCode</A></B>()</CODE>\r
169 \r
170 <BR>\r
171 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
172 </TR>\r
173 <TR BGCOLOR="white" CLASS="TableRowColor">\r
174 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
175 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
176 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/Hit.html#toString()">toString</A></B>()</CODE>\r
177 \r
178 <BR>\r
179 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
180 </TR>\r
181 </TABLE>\r
182 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
183 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
184 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
185 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
186 </TR>\r
187 <TR BGCOLOR="white" CLASS="TableRowColor">\r
188 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
189 </TR>\r
190 </TABLE>\r
191 &nbsp;\r
192 <P>\r
193 \r
194 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
195 \r
196 <A NAME="constructor_detail"><!-- --></A>\r
197 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
198 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
199 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
200 <B>Constructor Detail</B></FONT></TH>\r
201 </TR>\r
202 </TABLE>\r
203 \r
204 <A NAME="Hit()"><!-- --></A><H3>\r
205 Hit</H3>\r
206 <PRE>\r
207 public <B>Hit</B>()</PRE>\r
208 <DL>\r
209 </DL>\r
210 \r
211 <!-- ============ METHOD DETAIL ========== -->\r
212 \r
213 <A NAME="method_detail"><!-- --></A>\r
214 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
215 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
216 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
217 <B>Method Detail</B></FONT></TH>\r
218 </TR>\r
219 </TABLE>\r
220 \r
221 <A NAME="toString()"><!-- --></A><H3>\r
222 toString</H3>\r
223 <PRE>\r
224 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
225 <DL>\r
226 <DD><DL>\r
227 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
228 </DD>\r
229 <DD><DL>\r
230 </DL>\r
231 </DD>\r
232 </DL>\r
233 <HR>\r
234 \r
235 <A NAME="hashCode()"><!-- --></A><H3>\r
236 hashCode</H3>\r
237 <PRE>\r
238 public int <B>hashCode</B>()</PRE>\r
239 <DL>\r
240 <DD><DL>\r
241 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
242 </DD>\r
243 <DD><DL>\r
244 </DL>\r
245 </DD>\r
246 </DL>\r
247 <HR>\r
248 \r
249 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
250 equals</H3>\r
251 <PRE>\r
252 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
253 <DL>\r
254 <DD><DL>\r
255 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
256 </DD>\r
257 <DD><DL>\r
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259 </DD>\r
260 </DL>\r
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