website/full_javadoc/compbio/pipeline/_jpred/JackHmmerHitParser.html

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  91 compbio.pipeline._jpred</FONT>\r
  92 <BR>\r
  93 Class JackHmmerHitParser</H2>\r
  94 <PRE>\r
  95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.pipeline._jpred.JackHmmerHitParser</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public class <B>JackHmmerHitParser</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 Parser for the following files:\r
 105 <P>\r
 106 \r
 107 <P>\r
 108 <DL>\r
 109 <DT><B>Author:</B></DT>\r
 110   <DD>pvtroshin</DD>\r
 111 </DL>\r
 112 <HR>\r
 113 \r
 114 <P>\r
 115 \r
 116 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
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 122 <B>Constructor Summary</B></FONT></TH>\r
 123 </TR>\r
 124 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 125 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/JackHmmerHitParser.html#JackHmmerHitParser(java.lang.String)">JackHmmerHitParser</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file)</CODE>\r
 126 \r
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 128 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
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 130 </TABLE>\r
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 141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 142 <CODE>static&nbsp;void</CODE></FONT></TD>\r
 143 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/JackHmmerHitParser.html#main(java.lang.String[])">main</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[]&nbsp;args)</CODE>\r
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 170 \r
 171 <A NAME="JackHmmerHitParser(java.lang.String)"><!-- --></A><H3>\r
 172 JackHmmerHitParser</H3>\r
 173 <PRE>\r
 174 public <B>JackHmmerHitParser</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;file)\r
 175                    throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 176 <DL>\r
 177 <DL>\r
 178 \r
 179 <DT><B>Throws:</B>\r
 180 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>\r
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 192 \r
 193 <A NAME="main(java.lang.String[])"><!-- --></A><H3>\r
 194 main</H3>\r
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 197                  throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>\r
 198 <DL>\r
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 200 \r
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