updated javadoc
[jabaws.git] / website / full_javadoc / compbio / pipeline / _jpred / PScore.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
6 <TITLE>\r
7 PScore\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="PScore";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/PScore.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="../../../compbio/pipeline/_jpred/Pairwise.html" title="class in compbio.pipeline._jpred"><B>PREV CLASS</B></A>&nbsp;\r
59 &nbsp;NEXT CLASS</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/pipeline/_jpred/PScore.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="PScore.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 <TR>\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
82 </TR>\r
83 </TABLE>\r
84 <A NAME="skip-navbar_top"></A>\r
85 <!-- ========= END OF TOP NAVBAR ========= -->\r
86 \r
87 <HR>\r
88 <!-- ======== START OF CLASS DATA ======== -->\r
89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.pipeline._jpred</FONT>\r
92 <BR>\r
93 Class PScore</H2>\r
94 <PRE>\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.pipeline._jpred.PScore</B>\r
97 </PRE>\r
98 <HR>\r
99 <DL>\r
100 <DT><PRE>public class <B>PScore</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
101 </PRE>\r
102 \r
103 <P>\r
104 <HR>\r
105 \r
106 <P>\r
107 \r
108 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
109 \r
110 <A NAME="constructor_summary"><!-- --></A>\r
111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
112 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
114 <B>Constructor Summary</B></FONT></TH>\r
115 </TR>\r
116 <TR BGCOLOR="white" CLASS="TableRowColor">\r
117 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/PScore.html#PScore()">PScore</A></B>()</CODE>\r
118 \r
119 <BR>\r
120 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
121 </TR>\r
122 </TABLE>\r
123 &nbsp;\r
124 <!-- ========== METHOD SUMMARY =========== -->\r
125 \r
126 <A NAME="method_summary"><!-- --></A>\r
127 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
128 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
129 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
130 <B>Method Summary</B></FONT></TH>\r
131 </TR>\r
132 <TR BGCOLOR="white" CLASS="TableRowColor">\r
133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
134 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
135 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/PScore.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</CODE>\r
136 \r
137 <BR>\r
138 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
139 </TR>\r
140 <TR BGCOLOR="white" CLASS="TableRowColor">\r
141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
142 <CODE>&nbsp;int</CODE></FONT></TD>\r
143 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/PScore.html#hashCode()">hashCode</A></B>()</CODE>\r
144 \r
145 <BR>\r
146 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
147 </TR>\r
148 <TR BGCOLOR="white" CLASS="TableRowColor">\r
149 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
150 <CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
151 <TD><CODE><B><A HREF="../../../compbio/pipeline/_jpred/PScore.html#toString()">toString</A></B>()</CODE>\r
152 \r
153 <BR>\r
154 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
155 </TR>\r
156 </TABLE>\r
157 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
158 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
159 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
160 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
161 </TR>\r
162 <TR BGCOLOR="white" CLASS="TableRowColor">\r
163 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
164 </TR>\r
165 </TABLE>\r
166 &nbsp;\r
167 <P>\r
168 \r
169 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
170 \r
171 <A NAME="constructor_detail"><!-- --></A>\r
172 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
173 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
174 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
175 <B>Constructor Detail</B></FONT></TH>\r
176 </TR>\r
177 </TABLE>\r
178 \r
179 <A NAME="PScore()"><!-- --></A><H3>\r
180 PScore</H3>\r
181 <PRE>\r
182 public <B>PScore</B>()</PRE>\r
183 <DL>\r
184 </DL>\r
185 \r
186 <!-- ============ METHOD DETAIL ========== -->\r
187 \r
188 <A NAME="method_detail"><!-- --></A>\r
189 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
190 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
191 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
192 <B>Method Detail</B></FONT></TH>\r
193 </TR>\r
194 </TABLE>\r
195 \r
196 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>\r
197 equals</H3>\r
198 <PRE>\r
199 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A>&nbsp;obj)</PRE>\r
200 <DL>\r
201 <DD><DL>\r
202 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
203 </DD>\r
204 <DD><DL>\r
205 </DL>\r
206 </DD>\r
207 </DL>\r
208 <HR>\r
209 \r
210 <A NAME="hashCode()"><!-- --></A><H3>\r
211 hashCode</H3>\r
212 <PRE>\r
213 public int <B>hashCode</B>()</PRE>\r
214 <DL>\r
215 <DD><DL>\r
216 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
217 </DD>\r
218 <DD><DL>\r
219 </DL>\r
220 </DD>\r
221 </DL>\r
222 <HR>\r
223 \r
224 <A NAME="toString()"><!-- --></A><H3>\r
225 toString</H3>\r
226 <PRE>\r
227 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>\r
228 <DL>\r
229 <DD><DL>\r
230 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>\r
231 </DD>\r
232 <DD><DL>\r
233 </DL>\r
234 </DD>\r
235 </DL>\r
236 <!-- ========= END OF CLASS DATA ========= -->\r
237 <HR>\r
238 \r
239 \r
240 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
241 <A NAME="navbar_bottom"><!-- --></A>\r
242 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
243 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
244 <TR>\r
245 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
246 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
247 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
248   <TR ALIGN="center" VALIGN="top">\r
249   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
250   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
251   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
252   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/PScore.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
253   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
254   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
255   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
256   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
257   </TR>\r
258 </TABLE>\r
259 </TD>\r
260 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
261 </EM>\r
262 </TD>\r
263 </TR>\r
264 \r
265 <TR>\r
266 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
267 &nbsp;<A HREF="../../../compbio/pipeline/_jpred/Pairwise.html" title="class in compbio.pipeline._jpred"><B>PREV CLASS</B></A>&nbsp;\r
268 &nbsp;NEXT CLASS</FONT></TD>\r
269 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
270   <A HREF="../../../index.html?compbio/pipeline/_jpred/PScore.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
271 &nbsp;<A HREF="PScore.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
272 &nbsp;<SCRIPT type="text/javascript">\r
273   <!--\r
274   if(window==top) {\r
275     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
276   }\r
277   //-->\r
278 </SCRIPT>\r
279 <NOSCRIPT>\r
280   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
281 </NOSCRIPT>\r
282 \r
283 \r
284 </FONT></TD>\r
285 </TR>\r
286 <TR>\r
287 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
288   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
289 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
290 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
291 </TR>\r
292 </TABLE>\r
293 <A NAME="skip-navbar_bottom"></A>\r
294 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
295 \r
296 <HR>\r
297 \r
298 </BODY>\r
299 </HTML>\r