updated javadoc
[jabaws.git] / website / full_javadoc / compbio / pipeline / _jpred / class-use / Hit.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
6 <TITLE>\r
7 Uses of Class compbio.pipeline._jpred.Hit\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-08-12">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="Uses of Class compbio.pipeline._jpred.Hit";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
43   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;PREV&nbsp;\r
59 &nbsp;NEXT</FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../../index.html?compbio/pipeline/_jpred/\class-useHit.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="Hit.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <HR>\r
82 <CENTER>\r
83 <H2>\r
84 <B>Uses of Class<br>compbio.pipeline._jpred.Hit</B></H2>\r
85 </CENTER>\r
86 \r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
90 Packages that use <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A></FONT></TH>\r
91 </TR>\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
93 <TD><A HREF="#compbio.pipeline._jpred"><B>compbio.pipeline._jpred</B></A></TD>\r
94 <TD>&nbsp;&nbsp;</TD>\r
95 </TR>\r
96 </TABLE>\r
97 &nbsp;\r
98 <P>\r
99 <A NAME="compbio.pipeline._jpred"><!-- --></A>\r
100 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
101 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
102 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
103 Uses of <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A> in <A HREF="../../../../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A></FONT></TH>\r
104 </TR>\r
105 </TABLE>\r
106 &nbsp;\r
107 <P>\r
108 \r
109 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
110 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">\r
111 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A> with parameters of type <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A></FONT></TH>\r
112 </TR>\r
113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
114 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
115 <CODE>&nbsp;int</CODE></FONT></TD>\r
116 <TD><CODE><B>Hit.NumberComporator.</B><B><A HREF="../../../../compbio/pipeline/_jpred/Hit.NumberComporator.html#compare(compbio.pipeline._jpred.Hit, compbio.pipeline._jpred.Hit)">compare</A></B>(<A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>&nbsp;o1,\r
117         <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>&nbsp;o2)</CODE>\r
118 \r
119 <BR>\r
120 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
121 </TR>\r
122 <TR BGCOLOR="white" CLASS="TableRowColor">\r
123 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
124 <CODE>&nbsp;int</CODE></FONT></TD>\r
125 <TD><CODE><B>Hit.EvalueComporator.</B><B><A HREF="../../../../compbio/pipeline/_jpred/Hit.EvalueComporator.html#compare(compbio.pipeline._jpred.Hit, compbio.pipeline._jpred.Hit)">compare</A></B>(<A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>&nbsp;o1,\r
126         <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>&nbsp;o2)</CODE>\r
127 \r
128 <BR>\r
129 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
130 </TR>\r
131 </TABLE>\r
132 &nbsp;\r
133 <P>\r
134 <HR>\r
135 \r
136 \r
137 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
138 <A NAME="navbar_bottom"><!-- --></A>\r
139 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
140 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
141 <TR>\r
142 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
143 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
144 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
145   <TR ALIGN="center" VALIGN="top">\r
146   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
147   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
148   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A>&nbsp;</TD>\r
149   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
150   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
151   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
152   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
153   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
154   </TR>\r
155 </TABLE>\r
156 </TD>\r
157 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
158 </EM>\r
159 </TD>\r
160 </TR>\r
161 \r
162 <TR>\r
163 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
164 &nbsp;PREV&nbsp;\r
165 &nbsp;NEXT</FONT></TD>\r
166 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
167   <A HREF="../../../../index.html?compbio/pipeline/_jpred/\class-useHit.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
168 &nbsp;<A HREF="Hit.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
169 &nbsp;<SCRIPT type="text/javascript">\r
170   <!--\r
171   if(window==top) {\r
172     document.writeln('<A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
173   }\r
174   //-->\r
175 </SCRIPT>\r
176 <NOSCRIPT>\r
177   <A HREF="../../../../allclasses-noframe.html"><B>All Classes</B></A>\r
178 </NOSCRIPT>\r
179 \r
180 \r
181 </FONT></TD>\r
182 </TR>\r
183 </TABLE>\r
184 <A NAME="skip-navbar_bottom"></A>\r
185 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
186 \r
187 <HR>\r
188 \r
189 </BODY>\r
190 </HTML>\r