website/full_javadoc/compbio/runner/msa/package-use.html

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   7 Uses of Package compbio.runner.msa\r
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  84 <B>Uses of Package<br>compbio.runner.msa</B></H2>\r
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  86 \r
  87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  90 Packages that use <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD><A HREF="#compbio.runner.msa"><B>compbio.runner.msa</B></A></TD>\r
  94 <TD>Wrappers for native executables for multiple sequence alignment (msa)&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
  98 <TD>&nbsp;&nbsp;</TD>\r
  99 </TR>\r
 100 </TABLE>\r
 101 &nbsp;\r
 102 <P>\r
 103 <A NAME="compbio.runner.msa"><!-- --></A>\r
 104 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 105 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 106 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 107 Classes in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A> used by <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>\r
 108 </TR>\r
 109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 110 <TD><B><A HREF="../../../compbio/runner/msa/class-use/ClustalO.html#compbio.runner.msa"><B>ClustalO</B></A></B>\r
 111 \r
 112 <BR>\r
 113 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 114 </TR>\r
 115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 116 <TD><B><A HREF="../../../compbio/runner/msa/class-use/ClustalW.html#compbio.runner.msa"><B>ClustalW</B></A></B>\r
 117 \r
 118 <BR>\r
 119 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 120 </TR>\r
 121 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 122 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Mafft.html#compbio.runner.msa"><B>Mafft</B></A></B>\r
 123 \r
 124 <BR>\r
 125 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Muscle.html#compbio.runner.msa"><B>Muscle</B></A></B>\r
 129 \r
 130 <BR>\r
 131 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 132 </TR>\r
 133 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 134 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Probcons.html#compbio.runner.msa"><B>Probcons</B></A></B>\r
 135 \r
 136 <BR>\r
 137 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 138 </TR>\r
 139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 140 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Tcoffee.html#compbio.runner.msa"><B>Tcoffee</B></A></B>\r
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 143 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 144 </TR>\r
 145 </TABLE>\r
 146 &nbsp;\r
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 149 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 150 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 151 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 152 Classes in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A> used by <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
 153 </TR>\r
 154 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 155 <TD><B><A HREF="../../../compbio/runner/msa/class-use/ClustalO.html#compbio.ws.server"><B>ClustalO</B></A></B>\r
 156 \r
 157 <BR>\r
 158 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 159 </TR>\r
 160 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 161 <TD><B><A HREF="../../../compbio/runner/msa/class-use/ClustalW.html#compbio.ws.server"><B>ClustalW</B></A></B>\r
 162 \r
 163 <BR>\r
 164 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 165 </TR>\r
 166 <TR BGCOLOR="white" CLASS="TableRowColor">\r
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 168 \r
 169 <BR>\r
 170 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 171 </TR>\r
 172 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 173 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Muscle.html#compbio.ws.server"><B>Muscle</B></A></B>\r
 174 \r
 175 <BR>\r
 176 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 177 </TR>\r
 178 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 179 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Probcons.html#compbio.ws.server"><B>Probcons</B></A></B>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 183 </TR>\r
 184 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 185 <TD><B><A HREF="../../../compbio/runner/msa/class-use/Tcoffee.html#compbio.ws.server"><B>Tcoffee</B></A></B>\r
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