build client source when build all
[jabaws.git] / website / full_javadoc / index-files / index-21.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
6 <TITLE>\r
7 V-Index\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2010-02-17">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="V-Index";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Use</FONT>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Index</B></FONT>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="index-20.html"><B>PREV LETTER</B></A>&nbsp;\r
59 &nbsp;<A HREF="index-22.html"><B>NEXT LETTER</B></A></FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../index.html?index-filesindex-21.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="index-21.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 </TABLE>\r
78 <A NAME="skip-navbar_top"></A>\r
79 <!-- ========= END OF TOP NAVBAR ========= -->\r
80 \r
81 <A HREF="index-1.html">A</A> <A HREF="index-2.html">B</A> <A HREF="index-3.html">C</A> <A HREF="index-4.html">D</A> <A HREF="index-5.html">E</A> <A HREF="index-6.html">F</A> <A HREF="index-7.html">G</A> <A HREF="index-8.html">H</A> <A HREF="index-9.html">I</A> <A HREF="index-10.html">J</A> <A HREF="index-11.html">K</A> <A HREF="index-12.html">L</A> <A HREF="index-13.html">M</A> <A HREF="index-14.html">N</A> <A HREF="index-15.html">O</A> <A HREF="index-16.html">P</A> <A HREF="index-17.html">R</A> <A HREF="index-18.html">S</A> <A HREF="index-19.html">T</A> <A HREF="index-20.html">U</A> <A HREF="index-21.html">V</A> <A HREF="index-22.html">W</A> <A HREF="index-23.html">_</A> <HR>\r
82 <A NAME="_V_"><!-- --></A><H2>\r
83 <B>V</B></H2>\r
84 <DL>\r
85 <DT><A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html#validate(javax.xml.validation.Validator, java.lang.String)"><B>validate(Validator, String)</B></A> - \r
86 Static method in class compbio.engine.conf.<A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</A>\r
87 <DD>&nbsp;\r
88 <DT><A HREF="../compbio/metadata/LimitsManager.html#validate(compbio.metadata.PresetManager)"><B>validate(PresetManager&lt;T&gt;)</B></A> - \r
89 Method in class compbio.metadata.<A HREF="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>\r
90 <DD>Validate Limits\r
91 <DT><A HREF="../compbio/metadata/PresetManager.html#validate(compbio.metadata.RunnerConfig)"><B>validate(RunnerConfig&lt;T&gt;)</B></A> - \r
92 Method in class compbio.metadata.<A HREF="../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>\r
93 <DD>Checks whether preset option and parameter are defined in RunnerConfig
94  object.\r
95 <DT><A HREF="../compbio/metadata/RunnerConfig.html#validate()"><B>validate()</B></A> - \r
96 Method in class compbio.metadata.<A HREF="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>\r
97 <DD>Validate the arguments\r
98 <DT><A HREF="../compbio/engine/client/PathValidator.html#validateDirectory(java.lang.String)"><B>validateDirectory(String)</B></A> - \r
99 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>\r
100 <DD>&nbsp;\r
101 <DT><A HREF="../compbio/engine/client/PathValidator.html#validateExecutable(java.lang.String)"><B>validateExecutable(String)</B></A> - \r
102 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>\r
103 <DD>&nbsp;\r
104 <DT><A HREF="../compbio/ws/server/WSUtil.html#validateFastaInput(java.util.List)"><B>validateFastaInput(List&lt;FastaSequence&gt;)</B></A> - \r
105 Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>\r
106 <DD>&nbsp;\r
107 <DT><A HREF="../compbio/ws/server/WSUtil.html#validateJobId(java.lang.String)"><B>validateJobId(String)</B></A> - \r
108 Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>\r
109 <DD>&nbsp;\r
110 <DT><A HREF="../compbio/engine/client/PathValidator.html#validatePathNames(java.util.List, java.lang.String)"><B>validatePathNames(List&lt;String&gt;, String)</B></A> - \r
111 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>\r
112 <DD>&nbsp;\r
113 <DT><A HREF="../compbio/ws/client/Jws2Client.html#validURL(java.lang.String)"><B>validURL(String)</B></A> - \r
114 Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
115 <DD>Attempt to construct the URL object from the string\r
116 <DT><A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata"><B>ValueConstrain</B></A> - Class in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD>The type and the lower and upper boundaries for numerical value.<DT><A HREF="../compbio/metadata/ValueConstrain.html#ValueConstrain()"><B>ValueConstrain()</B></A> - \r
117 Constructor for class compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>\r
118 <DD>&nbsp;\r
119 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata"><B>ValueConstrain.Type</B></A> - Enum in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD>&nbsp;<DT><A HREF="../compbio/data/_structure/JnetAnnotation.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
120 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>\r
121 <DD>Returns the enum constant of this type with the specified name.\r
122 <DT><A HREF="../compbio/data/_structure/JpredAnnotation.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
123 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>\r
124 <DD>Returns the enum constant of this type with the specified name.\r
125 <DT><A HREF="../compbio/data/sequence/Program.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
126 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>\r
127 <DD>Returns the enum constant of this type with the specified name.\r
128 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
129 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>\r
130 <DD>Returns the enum constant of this type with the specified name.\r
131 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
132 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
133 <DD>Returns the enum constant of this type with the specified name.\r
134 <DT><A HREF="../compbio/metadata/JobStatus.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
135 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
136 <DD>Returns the enum constant of this type with the specified name.\r
137 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
138 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>\r
139 <DD>Returns the enum constant of this type with the specified name.\r
140 <DT><A HREF="../compbio/ws/client/Jws2Client.Services.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
141 Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
142 <DD>Returns the enum constant of this type with the specified name.\r
143 <DT><A HREF="../compbio/data/_structure/JnetAnnotation.html#values()"><B>values()</B></A> - \r
144 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>\r
145 <DD>Returns an array containing the constants of this enum type, in
146 the order they are declared.\r
147 <DT><A HREF="../compbio/data/_structure/JpredAnnotation.html#values()"><B>values()</B></A> - \r
148 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>\r
149 <DD>Returns an array containing the constants of this enum type, in
150 the order they are declared.\r
151 <DT><A HREF="../compbio/data/sequence/Program.html#values()"><B>values()</B></A> - \r
152 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>\r
153 <DD>Returns an array containing the constants of this enum type, in
154 the order they are declared.\r
155 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#values()"><B>values()</B></A> - \r
156 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>\r
157 <DD>Returns an array containing the constants of this enum type, in
158 the order they are declared.\r
159 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#values()"><B>values()</B></A> - \r
160 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
161 <DD>Returns an array containing the constants of this enum type, in
162 the order they are declared.\r
163 <DT><A HREF="../compbio/metadata/JobStatus.html#values()"><B>values()</B></A> - \r
164 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
165 <DD>Returns an array containing the constants of this enum type, in
166 the order they are declared.\r
167 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html#values()"><B>values()</B></A> - \r
168 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>\r
169 <DD>Returns an array containing the constants of this enum type, in
170 the order they are declared.\r
171 <DT><A HREF="../compbio/ws/client/Jws2Client.Services.html#values()"><B>values()</B></A> - \r
172 Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
173 <DD>Returns an array containing the constants of this enum type, in
174 the order they are declared.\r
175 </DL>\r
176 <HR>\r
177 \r
178 \r
179 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
180 <A NAME="navbar_bottom"><!-- --></A>\r
181 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
182 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
183 <TR>\r
184 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
185 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
186 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
187   <TR ALIGN="center" VALIGN="top">\r
188   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
189   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
190   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
191   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Use</FONT>&nbsp;</TD>\r
192   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../overview-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
193   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
194   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Index</B></FONT>&nbsp;</TD>\r
195   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
196   </TR>\r
197 </TABLE>\r
198 </TD>\r
199 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
200 </EM>\r
201 </TD>\r
202 </TR>\r
203 \r
204 <TR>\r
205 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
206 &nbsp;<A HREF="index-20.html"><B>PREV LETTER</B></A>&nbsp;\r
207 &nbsp;<A HREF="index-22.html"><B>NEXT LETTER</B></A></FONT></TD>\r
208 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
209   <A HREF="../index.html?index-filesindex-21.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
210 &nbsp;<A HREF="index-21.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
211 &nbsp;<SCRIPT type="text/javascript">\r
212   <!--\r
213   if(window==top) {\r
214     document.writeln('<A HREF="../allclasses-noframe.html"><B>All Classes</B></A>');\r
215   }\r
216   //-->\r
217 </SCRIPT>\r
218 <NOSCRIPT>\r
219   <A HREF="../allclasses-noframe.html"><B>All Classes</B></A>\r
220 </NOSCRIPT>\r
221 \r
222 \r
223 </FONT></TD>\r
224 </TR>\r
225 </TABLE>\r
226 <A NAME="skip-navbar_bottom"></A>\r
227 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
228 \r
229 <A HREF="index-1.html">A</A> <A HREF="index-2.html">B</A> <A HREF="index-3.html">C</A> <A HREF="index-4.html">D</A> <A HREF="index-5.html">E</A> <A HREF="index-6.html">F</A> <A HREF="index-7.html">G</A> <A HREF="index-8.html">H</A> <A HREF="index-9.html">I</A> <A HREF="index-10.html">J</A> <A HREF="index-11.html">K</A> <A HREF="index-12.html">L</A> <A HREF="index-13.html">M</A> <A HREF="index-14.html">N</A> <A HREF="index-15.html">O</A> <A HREF="index-16.html">P</A> <A HREF="index-17.html">R</A> <A HREF="index-18.html">S</A> <A HREF="index-19.html">T</A> <A HREF="index-20.html">U</A> <A HREF="index-21.html">V</A> <A HREF="index-22.html">W</A> <A HREF="index-23.html">_</A> <HR>\r
230 \r
231 </BODY>\r
232 </HTML>\r