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  86 <B>Packages</B></FONT></TH>\r
  87 </TR>\r
  88 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  89 <TD WIDTH="20%"><B><A HREF="compbio/data/_structure/package-summary.html">compbio.data._structure</A></B></TD>\r
  90 <TD>&nbsp;</TD>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/package-summary.html">compbio.data.msa</A></B></TD>\r
  94 <TD>&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></B></TD>\r
  98 <TD>&nbsp;</TD>\r
  99 </TR>\r
 100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 101 <TD WIDTH="20%"><B><A HREF="compbio/data/sequence/package-summary.html">compbio.data.sequence</A></B></TD>\r
 102 <TD>A data model for multiple sequence alignment web services
 103  Classes in this package have no dependencies to other sources in the project.</TD>\r
 104 </TR>\r
 105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 106 <TD WIDTH="20%"><B><A HREF="compbio/engine/package-summary.html">compbio.engine</A></B></TD>\r
 107 <TD>&nbsp;</TD>\r
 108 </TR>\r
 109 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 110 <TD WIDTH="20%"><B><A HREF="compbio/engine/client/package-summary.html">compbio.engine.client</A></B></TD>\r
 111 <TD>Classes and interfaces representing an input for engines.</TD>\r
 112 </TR>\r
 113 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 114 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A></B></TD>\r
 115 <TD>An cluster engine classes responsible for execution of Executables on the clusters.</TD>\r
 116 </TR>\r
 117 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 118 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A></B></TD>\r
 119 <TD>&nbsp;</TD>\r
 120 </TR>\r
 121 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 122 <TD WIDTH="20%"><B><A HREF="compbio/engine/conf/package-summary.html">compbio.engine.conf</A></B></TD>\r
 123 <TD>Classes commonly used by both engines.</TD>\r
 124 </TR>\r
 125 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 126 <TD WIDTH="20%"><B><A HREF="compbio/engine/local/package-summary.html">compbio.engine.local</A></B></TD>\r
 127 <TD>An local engine classes responsible for execution of Executables on the local computer
 128  (the same machine as JVM running these classes).</TD>\r
 129 </TR>\r
 130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 131 <TD WIDTH="20%"><B><A HREF="compbio/metadata/package-summary.html">compbio.metadata</A></B></TD>\r
 132 <TD>A meta-data model for multiple sequence alignment web services
 133  Classes in this package have no dependencies to other sources in the project.</TD>\r
 134 </TR>\r
 135 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 136 <TD WIDTH="20%"><B><A HREF="compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A></B></TD>\r
 137 <TD>&nbsp;</TD>\r
 138 </TR>\r
 139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 140 <TD WIDTH="20%"><B><A HREF="compbio/runner/package-summary.html">compbio.runner</A></B></TD>\r
 141 <TD>Utilities commonly used by all runners.</TD>\r
 142 </TR>\r
 143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 144 <TD WIDTH="20%"><B><A HREF="compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></B></TD>\r
 145 <TD>&nbsp;</TD>\r
 146 </TR>\r
 147 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 148 <TD WIDTH="20%"><B><A HREF="compbio/runner/_jpred/package-summary.html">compbio.runner._jpred</A></B></TD>\r
 149 <TD>&nbsp;</TD>\r
 150 </TR>\r
 151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 152 <TD WIDTH="20%"><B><A HREF="compbio/runner/msa/package-summary.html">compbio.runner.msa</A></B></TD>\r
 153 <TD>Wrappers for native executables for multiple sequence alignment (msa)</TD>\r
 154 </TR>\r
 155 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 156 <TD WIDTH="20%"><B><A HREF="compbio/runner/psiblast/package-summary.html">compbio.runner.psiblast</A></B></TD>\r
 157 <TD>&nbsp;</TD>\r
 158 </TR>\r
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 160 <TD WIDTH="20%"><B><A HREF="compbio/ws/client/package-summary.html">compbio.ws.client</A></B></TD>\r
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 164 <TD WIDTH="20%"><B><A HREF="compbio/ws/server/package-summary.html">compbio.ws.server</A></B></TD>\r
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