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  84 JABAWS 2 javadoc\r
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  87 \r
  88 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
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  90 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  91 <B>Packages</B></FONT></TH>\r
  92 </TR>\r
  93 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  94 <TD WIDTH="20%"><B><A HREF="compbio/data/_structure/package-summary.html">compbio.data._structure</A></B></TD>\r
  95 <TD>&nbsp;</TD>\r
  96 </TR>\r
  97 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  98 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/package-summary.html">compbio.data.msa</A></B></TD>\r
  99 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.</TD>\r
 100 </TR>\r
 101 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 102 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></B></TD>\r
 103 <TD>&nbsp;</TD>\r
 104 </TR>\r
 105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 106 <TD WIDTH="20%"><B><A HREF="compbio/data/sequence/package-summary.html">compbio.data.sequence</A></B></TD>\r
 107 <TD>A data model for multiple sequence alignment web services and utility methods
 108  that work on the objects of this model.</TD>\r
 109 </TR>\r
 110 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 111 <TD WIDTH="20%"><B><A HREF="compbio/engine/package-summary.html">compbio.engine</A></B></TD>\r
 112 <TD>&nbsp;</TD>\r
 113 </TR>\r
 114 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 115 <TD WIDTH="20%"><B><A HREF="compbio/engine/client/package-summary.html">compbio.engine.client</A></B></TD>\r
 116 <TD>&nbsp;</TD>\r
 117 </TR>\r
 118 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 119 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A></B></TD>\r
 120 <TD>&nbsp;</TD>\r
 121 </TR>\r
 122 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 123 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A></B></TD>\r
 124 <TD>&nbsp;</TD>\r
 125 </TR>\r
 126 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 127 <TD WIDTH="20%"><B><A HREF="compbio/engine/conf/package-summary.html">compbio.engine.conf</A></B></TD>\r
 128 <TD>&nbsp;</TD>\r
 129 </TR>\r
 130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 131 <TD WIDTH="20%"><B><A HREF="compbio/engine/local/package-summary.html">compbio.engine.local</A></B></TD>\r
 132 <TD>&nbsp;</TD>\r
 133 </TR>\r
 134 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 135 <TD WIDTH="20%"><B><A HREF="compbio/metadata/package-summary.html">compbio.metadata</A></B></TD>\r
 136 <TD>A meta-data model for multiple sequence alignment web services
 137  Classes in this package have no dependencies to other sources in the project.</TD>\r
 138 </TR>\r
 139 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 140 <TD WIDTH="20%"><B><A HREF="compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A></B></TD>\r
 141 <TD>&nbsp;</TD>\r
 142 </TR>\r
 143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 144 <TD WIDTH="20%"><B><A HREF="compbio/runner/package-summary.html">compbio.runner</A></B></TD>\r
 145 <TD>Utilities commonly used by all runners.</TD>\r
 146 </TR>\r
 147 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 148 <TD WIDTH="20%"><B><A HREF="compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></B></TD>\r
 149 <TD>&nbsp;</TD>\r
 150 </TR>\r
 151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 152 <TD WIDTH="20%"><B><A HREF="compbio/runner/_jpred/package-summary.html">compbio.runner._jpred</A></B></TD>\r
 153 <TD>&nbsp;</TD>\r
 154 </TR>\r
 155 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 156 <TD WIDTH="20%"><B><A HREF="compbio/runner/conservation/package-summary.html">compbio.runner.conservation</A></B></TD>\r
 157 <TD>&nbsp;</TD>\r
 158 </TR>\r
 159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 160 <TD WIDTH="20%"><B><A HREF="compbio/runner/disorder/package-summary.html">compbio.runner.disorder</A></B></TD>\r
 161 <TD>&nbsp;</TD>\r
 162 </TR>\r
 163 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 164 <TD WIDTH="20%"><B><A HREF="compbio/runner/msa/package-summary.html">compbio.runner.msa</A></B></TD>\r
 165 <TD>Wrappers for native executables for multiple sequence alignment (msa)</TD>\r
 166 </TR>\r
 167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 168 <TD WIDTH="20%"><B><A HREF="compbio/stat/collector/package-summary.html">compbio.stat.collector</A></B></TD>\r
 169 <TD>&nbsp;</TD>\r
 170 </TR>\r
 171 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 172 <TD WIDTH="20%"><B><A HREF="compbio/stat/servlet/package-summary.html">compbio.stat.servlet</A></B></TD>\r
 173 <TD>&nbsp;</TD>\r
 174 </TR>\r
 175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 176 <TD WIDTH="20%"><B><A HREF="compbio/stat/servlet/util/package-summary.html">compbio.stat.servlet.util</A></B></TD>\r
 177 <TD>&nbsp;</TD>\r
 178 </TR>\r
 179 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 180 <TD WIDTH="20%"><B><A HREF="compbio/ws/client/package-summary.html">compbio.ws.client</A></B></TD>\r
 181 <TD>A command line client and web services testing client for
 182  JAva Bioinformatics Analysis Web Services.</TD>\r
 183 </TR>\r
 184 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 185 <TD WIDTH="20%"><B><A HREF="compbio/ws/server/package-summary.html">compbio.ws.server</A></B></TD>\r
 186 <TD>&nbsp;</TD>\r
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