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  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
  42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
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  84 Hierarchy For All Packages</H2>\r
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  87 <DT><B>Package Hierarchies:</B><DD><A HREF="compbio/data/_structure/package-tree.html">compbio.data._structure</A>, <A HREF="compbio/data/msa/package-tree.html">compbio.data.msa</A>, <A HREF="compbio/data/msa/jaxws/package-tree.html">compbio.data.msa.jaxws</A>, <A HREF="compbio/data/sequence/package-tree.html">compbio.data.sequence</A>, <A HREF="compbio/engine/package-tree.html">compbio.engine</A>, <A HREF="compbio/engine/client/package-tree.html">compbio.engine.client</A>, <A HREF="compbio/engine/cluster/drmaa/package-tree.html">compbio.engine.cluster.drmaa</A>, <A HREF="compbio/engine/cluster/dundee/package-tree.html">compbio.engine.cluster.dundee</A>, <A HREF="compbio/engine/conf/package-tree.html">compbio.engine.conf</A>, <A HREF="compbio/engine/local/package-tree.html">compbio.engine.local</A>, <A HREF="compbio/metadata/package-tree.html">compbio.metadata</A>, <A HREF="compbio/pipeline/_jpred/package-tree.html">compbio.pipeline._jpred</A>, <A HREF="compbio/runner/package-tree.html">compbio.runner</A>, <A HREF="compbio/runner/_impl/package-tree.html">compbio.runner._impl</A>, <A HREF="compbio/runner/_jpred/package-tree.html">compbio.runner._jpred</A>, <A HREF="compbio/runner/conservation/package-tree.html">compbio.runner.conservation</A>, <A HREF="compbio/runner/disorder/package-tree.html">compbio.runner.disorder</A>, <A HREF="compbio/runner/msa/package-tree.html">compbio.runner.msa</A>, <A HREF="compbio/stat/collector/package-tree.html">compbio.stat.collector</A>, <A HREF="compbio/stat/servlet/package-tree.html">compbio.stat.servlet</A>, <A HREF="compbio/stat/servlet/util/package-tree.html">compbio.stat.servlet.util</A>, <A HREF="compbio/ws/client/package-tree.html">compbio.ws.client</A>, <A HREF="compbio/ws/server/package-tree.html">compbio.ws.server</A></DL>\r
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 157 <LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata"><B>ResultNotAvailableException</B></A><LI TYPE="circle">compbio.data.sequence.<A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence"><B>UnknownFileFormatException</B></A><LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata"><B>WrongParameterException</B></A></UL>\r
 158 </UL>\r
 159 <LI TYPE="circle">compbio.stat.servlet.util.<A HREF="compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util"><B>Totals</B></A><LI TYPE="circle">compbio.data.msa.jaxws.<A HREF="compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.html" title="class in compbio.data.msa.jaxws"><B>UnsupportedRuntimeExceptionBean</B></A><LI TYPE="circle">compbio.runner.<A HREF="compbio/runner/Util.html" title="class in compbio.runner"><B>Util</B></A><LI TYPE="circle">compbio.engine.client.<A HREF="compbio/engine/client/Util.html" title="class in compbio.engine.client"><B>Util</B></A><LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/ValueConstrain.html" title="class in compbio.metadata"><B>ValueConstrain</B></A><LI TYPE="circle">compbio.data.msa.jaxws.<A HREF="compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws"><B>WrongParameterExceptionBean</B></A><LI TYPE="circle">compbio.ws.client.<A HREF="compbio/ws/client/WSTester.html" title="class in compbio.ws.client"><B>WSTester</B></A><LI TYPE="circle">compbio.ws.server.<A HREF="compbio/ws/server/WSUtil.html" title="class in compbio.ws.server"><B>WSUtil</B></A></UL>\r
 160 </UL>\r
 161 <H2>\r
 162 Interface Hierarchy\r
 163 </H2>\r
 164 <UL>\r
 165 <LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata"><B>Argument</B></A>&lt;T&gt;<LI TYPE="circle">compbio.engine.<A HREF="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine"><B>AsyncExecutor</B></A><LI TYPE="circle">compbio.engine.client.<A HREF="compbio/engine/client/Executable.html" title="interface in compbio.engine.client"><B>Executable</B></A>&lt;T&gt;<UL>\r
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 167 <LI TYPE="circle">compbio.engine.client.<A HREF="compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client"><B>PipedExecutable</B></A>&lt;T&gt;<UL>\r
 168 <LI TYPE="circle">compbio.engine.client.<A HREF="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client"><B>ConfiguredExecutable</B></A>&lt;T&gt; (also extends compbio.engine.client.<A HREF="compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;)\r
 169 </UL>\r
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 172 <LI TYPE="circle">compbio.data.msa.<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>MsaWS</B></A>&lt;T&gt; (also extends compbio.data.msa.<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</A>, compbio.data.msa.<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</A>&lt;T&gt;)\r
 173 <LI TYPE="circle">compbio.data.msa.<A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa"><B>RegistryWS</B></A><LI TYPE="circle">compbio.data.msa.<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><B>SequenceAnnotation</B></A>&lt;T&gt; (also extends compbio.data.msa.<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</A>, compbio.data.msa.<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</A>&lt;T&gt;)\r
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 177 <LI TYPE="circle">compbio.data.msa.<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><B>SequenceAnnotation</B></A>&lt;T&gt; (also extends compbio.data.msa.<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A>, compbio.data.msa.<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</A>&lt;T&gt;)\r
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 180 <LI TYPE="circle">compbio.data.msa.<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>MsaWS</B></A>&lt;T&gt; (also extends compbio.data.msa.<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A>, compbio.data.msa.<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</A>)\r
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 182 </UL>\r
 183 <LI TYPE="circle">compbio.engine.<A HREF="compbio/engine/SyncExecutor.html" title="interface in compbio.engine"><B>SyncExecutor</B></A></UL>\r
 184 <H2>\r
 185 Enum Hierarchy\r
 186 </H2>\r
 187 <UL>\r
 188 <LI TYPE="circle">java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang"><B>Object</B></A><UL>\r
 189 <LI TYPE="circle">java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang"><B>Enum</B></A>&lt;E&gt; (implements java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A>&lt;T&gt;, java.io.<A HREF="http://java.sun.com/javase/6/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</A>)\r
 190 <UL>\r
 191 <LI TYPE="circle">compbio.data.sequence.<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence"><B>SMERFSConstraints</B></A><LI TYPE="circle">compbio.data.sequence.<A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence"><B>DisorderMethod</B></A><LI TYPE="circle">compbio.engine.client.<A HREF="compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client"><B>Executable.ExecProvider</B></A><LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata"><B>ValueConstrain.Type</B></A><LI TYPE="circle">compbio.metadata.<A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata"><B>JobStatus</B></A><LI TYPE="circle">compbio.engine.cluster.dundee.<A HREF="compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee"><B>_Queue</B></A><LI TYPE="circle">compbio.ws.client.<A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client"><B>Services</B></A><LI TYPE="circle">compbio.data.sequence.<A HREF="compbio/data/sequence/Program.html" title="enum in compbio.data.sequence"><B>Program</B></A><LI TYPE="circle">compbio.data.sequence.<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence"><B>ConservationMethod</B></A><LI TYPE="circle">compbio.stat.servlet.util.<A HREF="compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util"><B>StatCollection.Stattype</B></A><LI TYPE="circle">compbio.data._structure.<A HREF="compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure"><B>JpredAnnotation</B></A><LI TYPE="circle">compbio.data._structure.<A HREF="compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure"><B>JnetAnnotation</B></A></UL>\r
 192 </UL>\r
 193 </UL>\r
 194 <HR>\r
 195 \r
 196 \r
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 207   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
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