website/template_header.jsp

   1 <?xml version="1.0" encoding="ISO-8859-1" ?>
   2 <%@ page language="java" contentType="text/html; charset=ISO-8859-1" pageEncoding="ISO-8859-1"%>
   3 <%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c" %>
   4 <%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn" %>
   5 <%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt" %>
   6 <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %>
   7
   8 <!DOCTYPE html>
   9 <html lang="en">
  10
  11 <!-- Header for BG group pages - different for each page... -->
  12 <head id="top">
  13     <meta http-equiv="content-type" content="text/html; charset=UTF-8">
  14     <meta charset="utf-8">
  15     <!--<meta http-equiv="X-UA-Compatible" content="IE=edge">-->
  16     <meta name="viewport" content="width=device-width, initial-scale=1.0">
  17
  18     <meta name="description" content="Java Bioinformatics Analyses Web Services (JABAWS) at the Barton Group -
  19                                         Bioinformatics Research Group in the Division of Computational Biology,
  20                                         School of Life Sciences, University of Dundee, UK.">
  21     <meta name="author" content="Fábio Madeira (v2.2)">
  22
  23     <title>JABAWS | Java Bioinformatics Analyses Web Services (JABAWS) | ${param.title}</title>
  24
  25     <!-- Header section of BG website pages - includes navbar and logos  must be used with an h2-xxxx.html file before -->
  26
  27     <!-- Google Analytics -->
  28     <script>
  29         (function(i, s, o, g, r, a, m) {
  30             i['GoogleAnalyticsObject'] = r;
  31             i[r] = i[r] ||
  32                 function() {
  33                     (i[r].q = i[r].q || []).push(arguments)
  34                 }, i[r].l = 1 * new Date();
  35             a = s.createElement(o), m = s.getElementsByTagName(o)[0];
  36             a.async = 1;
  37             a.src = g;
  38             m.parentNode.insertBefore(a, m)
  39         })(window, document, 'script', 'https://www.google-analytics.com/analytics.js', 'ga');
  40
  41         ga('create', 'UA-5356328-1', 'auto');
  42         ga('send', 'pageview');
  43     </script>
  44     <!-- End Google Analytics -->
  45
  46     <link rel="shortcut icon" href="${pageContext.request.contextPath}/static/img/BG_intense2_small.ico">
  47     <%--<!-- Bootstrap core CSS -->--%>
  48     <link href="${pageContext.request.contextPath}/static/css/bootstrap.min.css" rel="stylesheet">
  49     <link href="${pageContext.request.contextPath}/static/css/font-awesome.min.css" rel="stylesheet">
  50     <%--&lt;%&ndash;<!-- Barton Group specific CSS -->&ndash;%&gt;--%>
  51     <link href="${pageContext.request.contextPath}/static/css/main.css" rel="stylesheet">
  52     <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.9.0/styles/default.min.css">
  53     ${param.html_custom_css}
  54     ${param.html_custom_js}
  55
  56 </head>
  57 <!--/navbar and header -->
  58
  59
  60 <body>
  61 <hr />
  62 <!-- BG header part -->
  63 <div class="container" id="mainpage">
  64     <div class="row">
  65
  66         <div class="col-md-2 col-xs-2 text-center">
  67             <a href="http://www.compbio.dundee.ac.uk/"></br>
  68                 <img src="${pageContext.request.contextPath}/static/img/BG_with_text.svg" style="width:70%;height:70%" alt="Barton Group Logo"></a>
  69         </div>
  70         <div class="col-md-1 col-xs-1 text-left"></div>
  71         <div class="col-md-6 col-xs-6 text-center">
  72             <a href="${pageContext.request.contextPath}/">
  73                 <img src="${pageContext.request.contextPath}/static/img/jabaws2.2.svg" style="width:100%;height:100%" alt="Barton Group Banner"></a>
  74         </div>
  75         <div class="col-md-1 col-xs-1 text-left"></div>
  76         <div class="col-md-2 col-xs-2 text-center">
  77             <a href="http://www.dundee.ac.uk"></br>
  78                 <img src="${pageContext.request.contextPath}/static/img/University_white_logo.svg" style="width:90%;height:90%" alt="University of Dundee Logo"></a>
  79         </div>
  80         <%--<div class="col-md-1 col-xs-1 text-left"></div>--%>
  81         <!--<div class="col-md-1 col-xs-1 text-left"></div>-->
  82         <!--<div class="col-md-10 col-xs-10 text-left">-->
  83         <!--<img src="static/jabaws2.2_header.svg" style="width:100%;height:100%" alt="Barton Group Banner">-->
  84         <!--</div>-->
  85         <!--<div class="col-md-2 col-xs-2 text-left"></div>-->
  86     </div>
  87 </div>
  88 <!--navbar region  -->
  89 <div class="navbar navbar-default" role="navigation">
  90     <div class="container">
  91         <div class="navbar-header">
  92             <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse">
  93                 <span class="sr-only">Toggle navigation</span>
  94                 <span class="icon-bar"></span>
  95                 <span class="icon-bar"></span>
  96                 <span class="icon-bar"></span>
  97             </button>
  98         </div>
  99         <div class="collapse navbar-collapse">
 100             <ul class="nav navbar-nav">
 101                 <li>
 102                     <a href="${pageContext.request.contextPath}/"><i class="fa fa-home" aria-hidden="true"></i> Home</a>
 103                 </li>
 104                 <li>
 105                     <a href="${pageContext.request.contextPath}/getting_started.jsp" ><i class="fa fa-fighter-jet" aria-hidden="true"></i> Getting Started</a>
 106                 </li>
 107
 108                 <li>
 109                     <a href="${pageContext.request.contextPath}/download.jsp" ><i class="fa fa-download" aria-hidden="true"></i> Download</a>
 110                 </li>
 111
 112                 <li class="dropdown">
 113                     <a href="${pageContext.request.contextPath}/man_about.jsp" class="dropdown-toggle" data-toggle="dropdown">
 114                         <i class="fa fa-file-text-o" aria-hidden="true"></i> Documentation<b class="caret"></b></a>
 115
 116                     <ul class="dropdown-menu">
 117                         <li>
 118                             <a href="${pageContext.request.contextPath}/docs/index.html">Table of Contents</a>
 119                         </li>
 120                         <li>
 121                             <a href="${pageContext.request.contextPath}/docs/getting_started.html">Getting Started</a>
 122                         </li>
 123                         <li>
 124                             <a href="${pageContext.request.contextPath}/docs/included_tools.html">Included Tools</a>
 125                         </li>
 126                         <li class="divider"></li>
 127                        <li>
 128                             <a href="${pageContext.request.contextPath}/docs/client.html">Command Line Client (CLI)</a>
 129                         </li>
 130                         <li>
 131                             <a href="${pageContext.request.contextPath}/docs/war.html">Web Application Archive (WAR)</a>
 132                         </li>
 133                         <li>
 134                             <a href="${pageContext.request.contextPath}/docs/va.html">Virtual Appliance (VA)</a>
 135                         </li>
 136                         <li class="divider"></li>
 137                         <li>
 138                             <a href="${pageContext.request.contextPath}/docs/advanced.html">Advanced Usage</a>
 139                         </li>
 140                         <li>
 141                             <a href="${pageContext.request.contextPath}/docs/develop.html">For Developers</a>
 142                         </li>
 143                         <li class="divider"></li>
 144                         <li>
 145                             <a href="${pageContext.request.contextPath}/docs/changelog.html">Changelog</a>
 146                         </li>
 147                         <li>
 148                             <a href="${pageContext.request.contextPath}/docs/stats.html">Usage Statistics</a>
 149                         </li>
 150                         <li class="divider"></li>
 151                         <li>
 152                             <a href="${pageContext.request.contextPath}/docs/full_javadoc/">Complete JavaDoc</a>
 153                         </li>
 154                         <li>
 155                             <a href="${pageContext.request.contextPath}/docs/dm_javadoc/">Data Model JavaDoc</a>
 156                         </li>
 157                     </ul>
 158                 </li>
 159                 <li>
 160                     <c:set var="status" value='${applicationScope["serviceStatusAllGood"]}' />
 161                     <c:if test="${ empty status }">
 162                         <a href="${pageContext.request.contextPath}/ServiceStatus" >
 163                         <i class="fa fa-cogs" aria-hidden="true"></i> Service Status</a>
 164                     </c:if>
 165                     <c:if test="${ !empty status }">
 166                         <c:if test="${status=='true'}">
 167                             <a href="${pageContext.request.contextPath}/ServiceStatus" >
 168                                 <i class="fa fa-heartbeat" aria-hidden="true" style="color: green"></i> Service Status</a>
 169                         </c:if>
 170                         <c:if test="${status=='false'}">
 171                             <a href="${pageContext.request.contextPath}/ServiceStatus" >
 172                                 <i class="fa fa-heartbeat" aria-hidden="true" style="color: red"></i> Service Status</a>
 173                         </c:if>
 174                     </c:if>
 175                 </li>
 176                 <li>
 177                     <a href="${pageContext.request.contextPath}/PublicAnnualStat" >
 178                         <i class="fa fa-bar-chart" aria-hidden="true"></i> Usage Statistics</a>
 179                 </li>
 180                 <!--Includes funding and contacts (v2.2)-->
 181                 <li>
 182                     <a href="${pageContext.request.contextPath}/about.jsp" ><i class="fa fa-info-circle" aria-hidden="true"></i> About</a>
 183                 </li>
 184             </ul>
 185         </div><!--/.nav-collapse -->
 186     </div>
 187 </div>
 188 <!--/navbar and header -->
 189
 190 <!--body -->
 191 <div class="container">