website/tests/Ant suite/Ant test.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <testsuite name="Ant test" failures="0" tests="165" time="524.407" errors="0">
   3   <properties/>
   4   <testcase name="testPull" time="0.45" classname="compbio.engine.FilePullerTester"/>
   5   <testcase name="testCache" time="6.006" classname="compbio.engine.FilePullerTester"/>
   6   <testcase name="testArguments" time="3.518" classname="compbio.runner.msa.ClustalWParametersTester"/>
   7   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ClustalWParametersTester"/>
   8   <testcase name="testConstrainedParametersMaxValues" time="1.835" classname="compbio.runner.msa.ClustalWParametersTester"/>
   9   <testcase name="testConstrainedParametersMinValues" time="1.232" classname="compbio.runner.msa.ClustalWParametersTester"/>
  10   <testcase name="testConstrainedParametersRandomValues" time="3.105" classname="compbio.runner.msa.ClustalWParametersTester"/>
  11   <testcase name="testDefaultParameters" time="0.502" classname="compbio.runner.msa.ClustalWParametersTester"/>
  12   <testcase name="testOptions" time="2.109" classname="compbio.runner.msa.ClustalWParametersTester"/>
  13   <testcase name="testParameters" time="2.68" classname="compbio.runner.msa.ClustalWParametersTester"/>
  14   <testcase name="testPresets" time="0.177" classname="compbio.runner.msa.ClustalWParametersTester"/>
  15   <testcase name="testReadClustalFile" time="0.022" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  16   <testcase name="testReadClustalFileLongNames" time="0.052" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  17   <testcase name="testReadClustalFileShortNames" time="0.054" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
  18   <testcase name="testProteinSequenceGeneration" time="0.0080" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
  19   <testcase name="testGetFormattedFasta" time="0.0" classname="compbio.data.sequence.FastaSequenceTester"/>
  20   <testcase name="testCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  21   <testcase name="testDeepCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  22   <testcase name="testReadWriteFasta" time="0.016" classname="compbio.data.sequence.SequenceUtilTester"/>
  23   <testcase name="testisNonAmbNucleotideSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  24   <testcase name="testisProteinSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
  25   <testcase name="testGetAsyncEngine" time="0.296" classname="compbio.engine.EngineConfiguratorTester"/>
  26   <testcase name="testGetSyncEngine" time="0.0" classname="compbio.engine.EngineConfiguratorTester"/>
  27   <testcase name="testGetDelay" time="0.0" classname="compbio.engine.FilePullerTester"/>
  28   <testcase name="testGet" time="0.046" classname="compbio.engine.FilePullerTester"/>
  29   <testcase name="test" time="5.187" classname="compbio.engine.PulledFileCacheTester"/>
  30   <testcase name="testCommandBuilding" time="0.0010" classname="compbio.engine.client.CommandBuilderTester"/>
  31   <testcase name="testOptionsToCommand" time="0.567" classname="compbio.engine.client.CommandBuilderTester"/>
  32   <testcase name="testSpaceDelimiterExecutable" time="0.0" classname="compbio.engine.client.CommandBuilderTester"/>
  33   <testcase name="testGetClassPath" time="0.234" classname="compbio.engine.client.PathValidatorTester"/>
  34   <testcase name="testIsAbsolutePath" time="0.0" classname="compbio.engine.client.PathValidatorTester"/>
  35   <testcase name="testTaskList" time="8.964" classname="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
  36   <testcase name="testCancel" time="1.273" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  37   <testcase name="testGetJobStatus" time="20.778" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  38   <testcase name="testSubmit" time="18.714" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
  39   <testcase name="testCancel" time="1.587" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
  40   <testcase name="testSubmit" time="17.835" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
  41   <testcase name="testParser" time="0.0" classname="compbio.engine.cluster.drmaa.UtilTester"/>
  42   <testcase name="testQueue" time="0.0" classname="compbio.engine.cluster.dundee._QueueTester"/>
  43   <testcase name="testGetDirectory" time="0.1" classname="compbio.engine.conf.DirectoryManagerTester"/>
  44   <testcase name="testGetDirectory" time="0.104" classname="compbio.engine.conf.DirectoryManagerTester"/>
  45   <testcase name="testGetDirectory" time="0.11" classname="compbio.engine.conf.DirectoryManagerTester"/>
  46   <testcase name="testGetDirectory" time="0.103" classname="compbio.engine.conf.DirectoryManagerTester"/>
  47   <testcase name="testClusterEngineConf" time="0.104" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  48   <testcase name="validateClustalConfiguration" time="0.043" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  49   <testcase name="validateMafftConfiguration" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  50   <testcase name="validateMuscleConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  51   <testcase name="validateTcoffeeConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
  52   <testcase name="testMarshalling" time="0.02" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  53   <testcase name="testSchemaFromCodeGeneration" time="0.504" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  54   <testcase name="testUnMarshalling" time="0.58" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  55   <testcase name="testValidation" time="0.636" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  56   <testcase name="testValidationOnMarshalling" time="0.011" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
  57   <testcase name="testAsyncCancelOperation" time="0.048" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  58   <testcase name="testAsyncRetrievOperation" time="0.56" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  59   <testcase name="testCancelCompletedTaskLocally" time="3.053" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  60   <testcase name="testCancelLocally" time="0.027" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  61   <testcase name="testGetStatus" time="20.872" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  62   <testcase name="testGetStatus" time="20.915" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  63   <testcase name="testGetStatus" time="21.332" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  64   <testcase name="testGetStatus" time="40.987" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  65   <testcase name="testGetStatus" time="20.863" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  66   <testcase name="testMultipleCancelLocally" time="0.267" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  67   <testcase name="testSubmitLocally" time="0.125" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  68   <testcase name="testSubmitLocally" time="0.22" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  69   <testcase name="testSubmitLocally" time="0.176" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  70   <testcase name="testSubmitLocally" time="0.482" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  71   <testcase name="testSubmitLocally" time="0.634" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
  72   <testcase name="testCancelCompletedTaskLocally" time="0.336" classname="compbio.engine.local.LocalRunnerTester"/>
  73   <testcase name="testCancelLocally" time="0.02" classname="compbio.engine.local.LocalRunnerTester"/>
  74   <testcase name="testMultipleCancelLocally" time="0.058" classname="compbio.engine.local.LocalRunnerTester"/>
  75   <testcase name="testgetAllOptions" time="0.0010" classname="compbio.metadata.OptionCombinatorTester"/>
  76   <testcase name="testgetAllParameters" time="0.0030" classname="compbio.metadata.OptionCombinatorTester"/>
  77   <testcase name="testMarshalling" time="0.058" classname="compbio.metadata.OptionMarshallerTester"/>
  78   <testcase name="testUnMarshalling" time="0.386" classname="compbio.metadata.OptionMarshallerTester"/>
  79   <testcase name="marshallPreset" time="0.899" classname="compbio.metadata.PresetTester"/>
  80   <testcase name="validatePresets" time="0.0010" classname="compbio.metadata.PresetTester"/>
  81   <testcase name="testCreateNumParameterWithoutValidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
  82   <testcase name="testCreateParameter" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  83   <testcase name="testCreateParameterWithValidValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  84   <testcase name="testOptionNoDefaultValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  85   <testcase name="testOptionSetInvalidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
  86   <testcase name="testOptionToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  87   <testcase name="testParameterToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  88   <testcase name="testValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  89   <testcase name="testValidateBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
  90   <testcase name="testValidateLowerBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  91   <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  92   <testcase name="testValidateValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
  93   <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.MclTester"/>
  94   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.NetNglycTester"/>
  95   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
  96   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
  97   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
  98   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
  99   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RonnTester"/>
 100   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.Tmhmm2Tester"/>
 101   <testcase name="readStatistics" time="1.178" classname="compbio.runner.msa.ClustalWTester"/>
 102   <testcase name="readStatisticsClusterExecution" time="8.121" classname="compbio.runner.msa.ClustalWTester"/>
 103   <testcase name="testConfigurationLoading" time="0.688" classname="compbio.runner.msa.ClustalWTester"/>
 104   <testcase name="testOptionsLocally" time="1.932" classname="compbio.runner.msa.ClustalWTester"/>
 105   <testcase name="testPersistance" time="0.431" classname="compbio.runner.msa.ClustalWTester"/>
 106   <testcase name="testRunLocally" time="0.171" classname="compbio.runner.msa.ClustalWTester"/>
 107   <testcase name="testRunOnCluster" time="15.937" classname="compbio.runner.msa.ClustalWTester"/>
 108   <testcase name="testRunWithMatrix" time="0.824" classname="compbio.runner.msa.ClustalWTester"/>
 109   <testcase name="testLoadLimits" time="0.0" classname="compbio.runner.msa.LimitTester"/>
 110   <testcase name="testArguments" time="6.103" classname="compbio.runner.msa.MafftParametersTester"/>
 111   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.MafftParametersTester"/>
 112   <testcase name="testConstrainedParametersMaxValues" time="3.235" classname="compbio.runner.msa.MafftParametersTester"/>
 113   <testcase name="testConstrainedParametersMinValues" time="1.326" classname="compbio.runner.msa.MafftParametersTester"/>
 114   <testcase name="testConstrainedParametersRandomValues" time="7.672" classname="compbio.runner.msa.MafftParametersTester"/>
 115   <testcase name="testDefaultParameters" time="20.463" classname="compbio.runner.msa.MafftParametersTester"/>
 116   <testcase name="testOptions" time="4.449" classname="compbio.runner.msa.MafftParametersTester"/>
 117   <testcase name="testParameters" time="2.422" classname="compbio.runner.msa.MafftParametersTester"/>
 118   <testcase name="testPresets" time="2.136" classname="compbio.runner.msa.MafftParametersTester"/>
 119   <testcase name="readStatistics" time="0.639" classname="compbio.runner.msa.MafftTester"/>
 120   <testcase name="testClusterExecute" time="11.34" classname="compbio.runner.msa.MafftTester"/>
 121   <testcase name="testConfigurationLoading" time="0.435" classname="compbio.runner.msa.MafftTester"/>
 122   <testcase name="testExecute" time="0.428" classname="compbio.runner.msa.MafftTester"/>
 123   <testcase name="testPersistance" time="1.033" classname="compbio.runner.msa.MafftTester"/>
 124   <testcase name="testRunOnClusterAsyncCheckStatusLongPoolingTime" time="21.418" classname="compbio.runner.msa.MafftTester"/>
 125   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.MafftTester"/>
 126   <testcase name="testArguments" time="7.798" classname="compbio.runner.msa.MuscleParametersTester"/>
 127   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.MuscleParametersTester"/>
 128   <testcase name="testConstrainedParametersMaxValues" time="1.534" classname="compbio.runner.msa.MuscleParametersTester"/>
 129   <testcase name="testConstrainedParametersMinValues" time="0.845" classname="compbio.runner.msa.MuscleParametersTester"/>
 130   <testcase name="testConstrainedParametersRandomValues" time="7.603" classname="compbio.runner.msa.MuscleParametersTester"/>
 131   <testcase name="testDefaultParameters" time="0.622" classname="compbio.runner.msa.MuscleParametersTester"/>
 132   <testcase name="testOptions" time="2.481" classname="compbio.runner.msa.MuscleParametersTester"/>
 133   <testcase name="testParameters" time="4.773" classname="compbio.runner.msa.MuscleParametersTester"/>
 134   <testcase name="testPresets" time="0.856" classname="compbio.runner.msa.MuscleParametersTester"/>
 135   <testcase name="readStatistics" time="0.932" classname="compbio.runner.msa.MuscleTester"/>
 136   <testcase name="testConfigurationLoading" time="0.313" classname="compbio.runner.msa.MuscleTester"/>
 137   <testcase name="testPersistance" time="0.241" classname="compbio.runner.msa.MuscleTester"/>
 138   <testcase name="testRunLocally" time="0.101" classname="compbio.runner.msa.MuscleTester"/>
 139   <testcase name="testRunOnCluster" time="8.142" classname="compbio.runner.msa.MuscleTester"/>
 140   <testcase name="testArguments" time="2.874" classname="compbio.runner.msa.ProbconsParametersTester"/>
 141   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ProbconsParametersTester"/>
 142   <testcase name="testConstrainedParametersMaxValues" time="38.416" classname="compbio.runner.msa.ProbconsParametersTester"/>
 143   <testcase name="testConstrainedParametersMinValues" time="0.768" classname="compbio.runner.msa.ProbconsParametersTester"/>
 144   <testcase name="testConstrainedParametersRandomValues" time="61.881" classname="compbio.runner.msa.ProbconsParametersTester"/>
 145   <testcase name="testDefaultParameters" time="14.704" classname="compbio.runner.msa.ProbconsParametersTester"/>
 146   <testcase name="testOptions" time="0.433" classname="compbio.runner.msa.ProbconsParametersTester"/>
 147   <testcase name="testParameters" time="1.321" classname="compbio.runner.msa.ProbconsParametersTester"/>
 148   <testcase name="readStatistics" time="0.441" classname="compbio.runner.msa.ProbconsTester"/>
 149   <testcase name="testClusterExecute" time="19.326" classname="compbio.runner.msa.ProbconsTester"/>
 150   <testcase name="testConfigurationLoading" time="0.107" classname="compbio.runner.msa.ProbconsTester"/>
 151   <testcase name="testExecute" time="0.436" classname="compbio.runner.msa.ProbconsTester"/>
 152   <testcase name="testPersistance" time="0.509" classname="compbio.runner.msa.ProbconsTester"/>
 153   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.ProbconsTester"/>
 154   <testcase name="testArguments" time="8.765" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 155   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 156   <testcase name="testConstrainedParametersMaxValues" time="11.166" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 157   <testcase name="testConstrainedParametersMinValues" time="5.507" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 158   <testcase name="testConstrainedParametersRandomValues" time="21.942" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 159   <testcase name="testDefaultParameters" time="10.988" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 160   <testcase name="testOptions" time="0.891" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 161   <testcase name="testParameters" time="12.717" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 162   <testcase name="testPresets" time="1.094" classname="compbio.runner.msa.TcoffeeParametersTester"/>
 163   <testcase name="readStatistics" time="0.876" classname="compbio.runner.msa.TcoffeeTester"/>
 164   <testcase name="testClusterExecute" time="5.526" classname="compbio.runner.msa.TcoffeeTester"/>
 165   <testcase name="testConfigurationLoading" time="0.099" classname="compbio.runner.msa.TcoffeeTester"/>
 166   <testcase name="testExecute" time="0.868" classname="compbio.runner.msa.TcoffeeTester"/>
 167   <testcase name="testNcore" time="0.0010" classname="compbio.runner.msa.TcoffeeTester"/>
 168   <testcase name="testPersistance" time="1.771" classname="compbio.runner.msa.TcoffeeTester"/>
 169 </testsuite>