wsbuild.log

   1
   2 build-server:
   3    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS.wsdl
   4    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd
   5    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS.wsdl
   6    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd
   7    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS.wsdl
   8    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd
   9    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GLprobsWS.wsdl
  10    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
  11    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd
  12    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS.wsdl
  13    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd
  14    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS.wsdl
  15    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS.wsdl
  16    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd
  17    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MSAprobsWS.wsdl
  18    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS.wsdl
  19    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd
  20    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS.wsdl
  21    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS_schema1.xsd
  22    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS.wsdl
  23    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
  24    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
  25    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS_schema1.xsd
  26    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS.wsdl
  27    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
  28    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
  29    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd
  30     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JpredWS
  31     [wsgen] Note:       ap round: 1
  32     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
  33     [wsgen] [should process method: align hasWebMethods: false ]
  34     [wsgen] [endpointReferencesInterface: true]
  35     [wsgen] [declaring class has WebSevice: true]
  36     [wsgen] [returning: true]
  37     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
  38     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
  39     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
  40     [wsgen] [should process method: customAlign hasWebMethods: false ]
  41     [wsgen] [endpointReferencesInterface: true]
  42     [wsgen] [declaring class has WebSevice: true]
  43     [wsgen] [returning: true]
  44     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
  45     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
  46     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
  47     [wsgen] [should process method: presetAlign hasWebMethods: false ]
  48     [wsgen] [endpointReferencesInterface: true]
  49     [wsgen] [declaring class has WebSevice: true]
  50     [wsgen] [returning: true]
  51     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
  52     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
  53     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
  54     [wsgen] [should process method: getResult hasWebMethods: false ]
  55     [wsgen] [endpointReferencesInterface: true]
  56     [wsgen] [declaring class has WebSevice: true]
  57     [wsgen] [returning: true]
  58     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
  59     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
  60     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
  61     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
  62     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
  63     [wsgen] [should process method: cancelJob hasWebMethods: false ]
  64     [wsgen] [endpointReferencesInterface: true]
  65     [wsgen] [declaring class has WebSevice: false]
  66     [wsgen] [returning: true]
  67     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
  68     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
  69     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
  70     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
  71     [wsgen] [endpointReferencesInterface: true]
  72     [wsgen] [declaring class has WebSevice: false]
  73     [wsgen] [returning: true]
  74     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
  75     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
  76     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
  77     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
  78     [wsgen] [endpointReferencesInterface: true]
  79     [wsgen] [declaring class has WebSevice: false]
  80     [wsgen] [returning: true]
  81     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
  82     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
  83     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
  84     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
  85     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
  86     [wsgen] [endpointReferencesInterface: true]
  87     [wsgen] [declaring class has WebSevice: false]
  88     [wsgen] [returning: true]
  89     [wsgen] [WrapperGen - method: getRunnerOptions()]
  90     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
  91     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
  92     [wsgen] [should process method: getPresets hasWebMethods: false ]
  93     [wsgen] [endpointReferencesInterface: true]
  94     [wsgen] [declaring class has WebSevice: false]
  95     [wsgen] [returning: true]
  96     [wsgen] [WrapperGen - method: getPresets()]
  97     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
  98     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
  99     [wsgen] [should process method: getLimit hasWebMethods: false ]
 100     [wsgen] [endpointReferencesInterface: true]
 101     [wsgen] [declaring class has WebSevice: false]
 102     [wsgen] [returning: true]
 103     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 104     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 105     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 106     [wsgen] [should process method: getLimits hasWebMethods: false ]
 107     [wsgen] [endpointReferencesInterface: true]
 108     [wsgen] [declaring class has WebSevice: false]
 109     [wsgen] [returning: true]
 110     [wsgen] [WrapperGen - method: getLimits()]
 111     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 112     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 113     [wsgen] compbio/data/msa/jaxws/Align.java
 114     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 115     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 116     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 117     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 118     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 119     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 120     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 121     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 122     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 123     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 124     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 125     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 126     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 127     [wsgen] compbio/data/msa/jaxws/GetResult.java
 128     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 129     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 130     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 131     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 132     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 133     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 134     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 135     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 136     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 137     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 138     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 139     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 140     [wsgen] Note:       ap round: 2
 141     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.AAConWS
 142     [wsgen] Note:       ap round: 1
 143     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
 144     [wsgen] [should process method: analize hasWebMethods: false ]
 145     [wsgen] [endpointReferencesInterface: true]
 146     [wsgen] [declaring class has WebSevice: true]
 147     [wsgen] [returning: true]
 148     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
 149     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 150     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
 151     [wsgen] [should process method: customAnalize hasWebMethods: false ]
 152     [wsgen] [endpointReferencesInterface: true]
 153     [wsgen] [declaring class has WebSevice: true]
 154     [wsgen] [returning: true]
 155     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 156     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 157     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
 158     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
 159     [wsgen] [endpointReferencesInterface: true]
 160     [wsgen] [declaring class has WebSevice: true]
 161     [wsgen] [returning: true]
 162     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 163     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 164     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
 165     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
 166     [wsgen] [endpointReferencesInterface: true]
 167     [wsgen] [declaring class has WebSevice: true]
 168     [wsgen] [returning: true]
 169     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
 170     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 171     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
 172     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 173     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 174     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 175     [wsgen] [endpointReferencesInterface: true]
 176     [wsgen] [declaring class has WebSevice: false]
 177     [wsgen] [returning: true]
 178     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 179     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 180     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 181     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 182     [wsgen] [endpointReferencesInterface: true]
 183     [wsgen] [declaring class has WebSevice: false]
 184     [wsgen] [returning: true]
 185     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 186     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 187     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 188     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 189     [wsgen] [endpointReferencesInterface: true]
 190     [wsgen] [declaring class has WebSevice: false]
 191     [wsgen] [returning: true]
 192     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 193     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 194     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 195     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 196     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 197     [wsgen] [endpointReferencesInterface: true]
 198     [wsgen] [declaring class has WebSevice: false]
 199     [wsgen] [returning: true]
 200     [wsgen] [WrapperGen - method: getRunnerOptions()]
 201     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 202     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 203     [wsgen] [should process method: getPresets hasWebMethods: false ]
 204     [wsgen] [endpointReferencesInterface: true]
 205     [wsgen] [declaring class has WebSevice: false]
 206     [wsgen] [returning: true]
 207     [wsgen] [WrapperGen - method: getPresets()]
 208     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 209     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 210     [wsgen] [should process method: getLimit hasWebMethods: false ]
 211     [wsgen] [endpointReferencesInterface: true]
 212     [wsgen] [declaring class has WebSevice: false]
 213     [wsgen] [returning: true]
 214     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 215     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 216     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 217     [wsgen] [should process method: getLimits hasWebMethods: false ]
 218     [wsgen] [endpointReferencesInterface: true]
 219     [wsgen] [declaring class has WebSevice: false]
 220     [wsgen] [returning: true]
 221     [wsgen] [WrapperGen - method: getLimits()]
 222     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 223     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 224     [wsgen] compbio/data/msa/jaxws/Analize.java
 225     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
 226     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 227     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 228     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
 229     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
 230     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
 231     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
 232     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 233     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 234     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 235     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 236     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 237     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 238     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 239     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 240     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 241     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 242     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 243     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 244     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
 245     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
 246     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 247     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 248     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 249     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 250     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 251     [wsgen] Note:       ap round: 2
 252     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MSAprobsWS
 253     [wsgen] Note:       ap round: 1
 254     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 255     [wsgen] [should process method: align hasWebMethods: false ]
 256     [wsgen] [endpointReferencesInterface: true]
 257     [wsgen] [declaring class has WebSevice: true]
 258     [wsgen] [returning: true]
 259     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 260     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 261     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 262     [wsgen] [should process method: customAlign hasWebMethods: false ]
 263     [wsgen] [endpointReferencesInterface: true]
 264     [wsgen] [declaring class has WebSevice: true]
 265     [wsgen] [returning: true]
 266     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 267     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 268     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 269     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 270     [wsgen] [endpointReferencesInterface: true]
 271     [wsgen] [declaring class has WebSevice: true]
 272     [wsgen] [returning: true]
 273     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 274     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 275     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 276     [wsgen] [should process method: getResult hasWebMethods: false ]
 277     [wsgen] [endpointReferencesInterface: true]
 278     [wsgen] [declaring class has WebSevice: true]
 279     [wsgen] [returning: true]
 280     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 281     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 282     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 283     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 284     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 285     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 286     [wsgen] [endpointReferencesInterface: true]
 287     [wsgen] [declaring class has WebSevice: false]
 288     [wsgen] [returning: true]
 289     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 290     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 291     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 292     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 293     [wsgen] [endpointReferencesInterface: true]
 294     [wsgen] [declaring class has WebSevice: false]
 295     [wsgen] [returning: true]
 296     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 297     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 298     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 299     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 300     [wsgen] [endpointReferencesInterface: true]
 301     [wsgen] [declaring class has WebSevice: false]
 302     [wsgen] [returning: true]
 303     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 304     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 305     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 306     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 307     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 308     [wsgen] [endpointReferencesInterface: true]
 309     [wsgen] [declaring class has WebSevice: false]
 310     [wsgen] [returning: true]
 311     [wsgen] [WrapperGen - method: getRunnerOptions()]
 312     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 313     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 314     [wsgen] [should process method: getPresets hasWebMethods: false ]
 315     [wsgen] [endpointReferencesInterface: true]
 316     [wsgen] [declaring class has WebSevice: false]
 317     [wsgen] [returning: true]
 318     [wsgen] [WrapperGen - method: getPresets()]
 319     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 320     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 321     [wsgen] [should process method: getLimit hasWebMethods: false ]
 322     [wsgen] [endpointReferencesInterface: true]
 323     [wsgen] [declaring class has WebSevice: false]
 324     [wsgen] [returning: true]
 325     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 326     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 327     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 328     [wsgen] [should process method: getLimits hasWebMethods: false ]
 329     [wsgen] [endpointReferencesInterface: true]
 330     [wsgen] [declaring class has WebSevice: false]
 331     [wsgen] [returning: true]
 332     [wsgen] [WrapperGen - method: getLimits()]
 333     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 334     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 335     [wsgen] compbio/data/msa/jaxws/Align.java
 336     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 337     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 338     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 339     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 340     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 341     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 342     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 343     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 344     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 345     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 346     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 347     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 348     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 349     [wsgen] compbio/data/msa/jaxws/GetResult.java
 350     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 351     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 352     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 353     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 354     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 355     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 356     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 357     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 358     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 359     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 360     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 361     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 362     [wsgen] Note:       ap round: 2
 363     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GLprobsWS
 364     [wsgen] Note:       ap round: 1
 365     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 366     [wsgen] [should process method: align hasWebMethods: false ]
 367     [wsgen] [endpointReferencesInterface: true]
 368     [wsgen] [declaring class has WebSevice: true]
 369     [wsgen] [returning: true]
 370     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 371     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 372     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 373     [wsgen] [should process method: customAlign hasWebMethods: false ]
 374     [wsgen] [endpointReferencesInterface: true]
 375     [wsgen] [declaring class has WebSevice: true]
 376     [wsgen] [returning: true]
 377     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 378     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 379     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 380     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 381     [wsgen] [endpointReferencesInterface: true]
 382     [wsgen] [declaring class has WebSevice: true]
 383     [wsgen] [returning: true]
 384     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 385     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 386     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 387     [wsgen] [should process method: getResult hasWebMethods: false ]
 388     [wsgen] [endpointReferencesInterface: true]
 389     [wsgen] [declaring class has WebSevice: true]
 390     [wsgen] [returning: true]
 391     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 392     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 393     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 394     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 395     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 396     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 397     [wsgen] [endpointReferencesInterface: true]
 398     [wsgen] [declaring class has WebSevice: false]
 399     [wsgen] [returning: true]
 400     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 401     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 402     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 403     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 404     [wsgen] [endpointReferencesInterface: true]
 405     [wsgen] [declaring class has WebSevice: false]
 406     [wsgen] [returning: true]
 407     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 408     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 409     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 410     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 411     [wsgen] [endpointReferencesInterface: true]
 412     [wsgen] [declaring class has WebSevice: false]
 413     [wsgen] [returning: true]
 414     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 415     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 416     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 417     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 418     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 419     [wsgen] [endpointReferencesInterface: true]
 420     [wsgen] [declaring class has WebSevice: false]
 421     [wsgen] [returning: true]
 422     [wsgen] [WrapperGen - method: getRunnerOptions()]
 423     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 424     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 425     [wsgen] [should process method: getPresets hasWebMethods: false ]
 426     [wsgen] [endpointReferencesInterface: true]
 427     [wsgen] [declaring class has WebSevice: false]
 428     [wsgen] [returning: true]
 429     [wsgen] [WrapperGen - method: getPresets()]
 430     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 431     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 432     [wsgen] [should process method: getLimit hasWebMethods: false ]
 433     [wsgen] [endpointReferencesInterface: true]
 434     [wsgen] [declaring class has WebSevice: false]
 435     [wsgen] [returning: true]
 436     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 437     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 438     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 439     [wsgen] [should process method: getLimits hasWebMethods: false ]
 440     [wsgen] [endpointReferencesInterface: true]
 441     [wsgen] [declaring class has WebSevice: false]
 442     [wsgen] [returning: true]
 443     [wsgen] [WrapperGen - method: getLimits()]
 444     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 445     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 446     [wsgen] compbio/data/msa/jaxws/Align.java
 447     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 448     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 449     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 450     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 451     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 452     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 453     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 454     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 455     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 456     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 457     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 458     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 459     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 460     [wsgen] compbio/data/msa/jaxws/GetResult.java
 461     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 462     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 463     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 464     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 465     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 466     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 467     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 468     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 469     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 470     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 471     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 472     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 473     [wsgen] Note:       ap round: 2
 474     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.ClustalWS
 475     [wsgen] Note:       ap round: 1
 476     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 477     [wsgen] [should process method: align hasWebMethods: false ]
 478     [wsgen] [endpointReferencesInterface: true]
 479     [wsgen] [declaring class has WebSevice: true]
 480     [wsgen] [returning: true]
 481     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 482     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 483     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 484     [wsgen] [should process method: customAlign hasWebMethods: false ]
 485     [wsgen] [endpointReferencesInterface: true]
 486     [wsgen] [declaring class has WebSevice: true]
 487     [wsgen] [returning: true]
 488     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 489     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 490     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 491     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 492     [wsgen] [endpointReferencesInterface: true]
 493     [wsgen] [declaring class has WebSevice: true]
 494     [wsgen] [returning: true]
 495     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 496     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 497     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 498     [wsgen] [should process method: getResult hasWebMethods: false ]
 499     [wsgen] [endpointReferencesInterface: true]
 500     [wsgen] [declaring class has WebSevice: true]
 501     [wsgen] [returning: true]
 502     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 503     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 504     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 505     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 506     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 507     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 508     [wsgen] [endpointReferencesInterface: true]
 509     [wsgen] [declaring class has WebSevice: false]
 510     [wsgen] [returning: true]
 511     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 512     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 513     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 514     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 515     [wsgen] [endpointReferencesInterface: true]
 516     [wsgen] [declaring class has WebSevice: false]
 517     [wsgen] [returning: true]
 518     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 519     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 520     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 521     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 522     [wsgen] [endpointReferencesInterface: true]
 523     [wsgen] [declaring class has WebSevice: false]
 524     [wsgen] [returning: true]
 525     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 526     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 527     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 528     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 529     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 530     [wsgen] [endpointReferencesInterface: true]
 531     [wsgen] [declaring class has WebSevice: false]
 532     [wsgen] [returning: true]
 533     [wsgen] [WrapperGen - method: getRunnerOptions()]
 534     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 535     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 536     [wsgen] [should process method: getPresets hasWebMethods: false ]
 537     [wsgen] [endpointReferencesInterface: true]
 538     [wsgen] [declaring class has WebSevice: false]
 539     [wsgen] [returning: true]
 540     [wsgen] [WrapperGen - method: getPresets()]
 541     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 542     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 543     [wsgen] [should process method: getLimit hasWebMethods: false ]
 544     [wsgen] [endpointReferencesInterface: true]
 545     [wsgen] [declaring class has WebSevice: false]
 546     [wsgen] [returning: true]
 547     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 548     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 549     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 550     [wsgen] [should process method: getLimits hasWebMethods: false ]
 551     [wsgen] [endpointReferencesInterface: true]
 552     [wsgen] [declaring class has WebSevice: false]
 553     [wsgen] [returning: true]
 554     [wsgen] [WrapperGen - method: getLimits()]
 555     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 556     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 557     [wsgen] compbio/data/msa/jaxws/Align.java
 558     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 559     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 560     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 561     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 562     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 563     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 564     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 565     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 566     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 567     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 568     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 569     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 570     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 571     [wsgen] compbio/data/msa/jaxws/GetResult.java
 572     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 573     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 574     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 575     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 576     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 577     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 578     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 579     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 580     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 581     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 582     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 583     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 584     [wsgen] Note:       ap round: 2
 585     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MuscleWS
 586     [wsgen] Note:       ap round: 1
 587     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 588     [wsgen] [should process method: align hasWebMethods: false ]
 589     [wsgen] [endpointReferencesInterface: true]
 590     [wsgen] [declaring class has WebSevice: true]
 591     [wsgen] [returning: true]
 592     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 593     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 594     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 595     [wsgen] [should process method: customAlign hasWebMethods: false ]
 596     [wsgen] [endpointReferencesInterface: true]
 597     [wsgen] [declaring class has WebSevice: true]
 598     [wsgen] [returning: true]
 599     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 600     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 601     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 602     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 603     [wsgen] [endpointReferencesInterface: true]
 604     [wsgen] [declaring class has WebSevice: true]
 605     [wsgen] [returning: true]
 606     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 607     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 608     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 609     [wsgen] [should process method: getResult hasWebMethods: false ]
 610     [wsgen] [endpointReferencesInterface: true]
 611     [wsgen] [declaring class has WebSevice: true]
 612     [wsgen] [returning: true]
 613     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 614     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 615     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 616     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 617     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 618     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 619     [wsgen] [endpointReferencesInterface: true]
 620     [wsgen] [declaring class has WebSevice: false]
 621     [wsgen] [returning: true]
 622     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 623     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 624     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 625     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 626     [wsgen] [endpointReferencesInterface: true]
 627     [wsgen] [declaring class has WebSevice: false]
 628     [wsgen] [returning: true]
 629     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 630     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 631     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 632     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 633     [wsgen] [endpointReferencesInterface: true]
 634     [wsgen] [declaring class has WebSevice: false]
 635     [wsgen] [returning: true]
 636     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 637     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 638     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 639     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 640     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 641     [wsgen] [endpointReferencesInterface: true]
 642     [wsgen] [declaring class has WebSevice: false]
 643     [wsgen] [returning: true]
 644     [wsgen] [WrapperGen - method: getRunnerOptions()]
 645     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 646     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 647     [wsgen] [should process method: getPresets hasWebMethods: false ]
 648     [wsgen] [endpointReferencesInterface: true]
 649     [wsgen] [declaring class has WebSevice: false]
 650     [wsgen] [returning: true]
 651     [wsgen] [WrapperGen - method: getPresets()]
 652     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 653     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 654     [wsgen] [should process method: getLimit hasWebMethods: false ]
 655     [wsgen] [endpointReferencesInterface: true]
 656     [wsgen] [declaring class has WebSevice: false]
 657     [wsgen] [returning: true]
 658     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 659     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 660     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 661     [wsgen] [should process method: getLimits hasWebMethods: false ]
 662     [wsgen] [endpointReferencesInterface: true]
 663     [wsgen] [declaring class has WebSevice: false]
 664     [wsgen] [returning: true]
 665     [wsgen] [WrapperGen - method: getLimits()]
 666     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 667     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 668     [wsgen] compbio/data/msa/jaxws/Align.java
 669     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 670     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 671     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 672     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 673     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 674     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 675     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 676     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 677     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 678     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 679     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 680     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 681     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 682     [wsgen] compbio/data/msa/jaxws/GetResult.java
 683     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 684     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 685     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 686     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 687     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 688     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 689     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 690     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 691     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 692     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 693     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 694     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 695     [wsgen] Note:       ap round: 2
 696     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MafftWS
 697     [wsgen] Note:       ap round: 1
 698     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 699     [wsgen] [should process method: align hasWebMethods: false ]
 700     [wsgen] [endpointReferencesInterface: true]
 701     [wsgen] [declaring class has WebSevice: true]
 702     [wsgen] [returning: true]
 703     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 704     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 705     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 706     [wsgen] [should process method: customAlign hasWebMethods: false ]
 707     [wsgen] [endpointReferencesInterface: true]
 708     [wsgen] [declaring class has WebSevice: true]
 709     [wsgen] [returning: true]
 710     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 711     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 712     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 713     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 714     [wsgen] [endpointReferencesInterface: true]
 715     [wsgen] [declaring class has WebSevice: true]
 716     [wsgen] [returning: true]
 717     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 718     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 719     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 720     [wsgen] [should process method: getResult hasWebMethods: false ]
 721     [wsgen] [endpointReferencesInterface: true]
 722     [wsgen] [declaring class has WebSevice: true]
 723     [wsgen] [returning: true]
 724     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 725     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 726     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 727     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 728     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 729     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 730     [wsgen] [endpointReferencesInterface: true]
 731     [wsgen] [declaring class has WebSevice: false]
 732     [wsgen] [returning: true]
 733     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 734     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 735     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 736     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 737     [wsgen] [endpointReferencesInterface: true]
 738     [wsgen] [declaring class has WebSevice: false]
 739     [wsgen] [returning: true]
 740     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 741     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 742     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 743     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 744     [wsgen] [endpointReferencesInterface: true]
 745     [wsgen] [declaring class has WebSevice: false]
 746     [wsgen] [returning: true]
 747     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 748     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 749     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 750     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 751     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 752     [wsgen] [endpointReferencesInterface: true]
 753     [wsgen] [declaring class has WebSevice: false]
 754     [wsgen] [returning: true]
 755     [wsgen] [WrapperGen - method: getRunnerOptions()]
 756     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 757     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 758     [wsgen] [should process method: getPresets hasWebMethods: false ]
 759     [wsgen] [endpointReferencesInterface: true]
 760     [wsgen] [declaring class has WebSevice: false]
 761     [wsgen] [returning: true]
 762     [wsgen] [WrapperGen - method: getPresets()]
 763     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 764     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 765     [wsgen] [should process method: getLimit hasWebMethods: false ]
 766     [wsgen] [endpointReferencesInterface: true]
 767     [wsgen] [declaring class has WebSevice: false]
 768     [wsgen] [returning: true]
 769     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 770     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 771     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 772     [wsgen] [should process method: getLimits hasWebMethods: false ]
 773     [wsgen] [endpointReferencesInterface: true]
 774     [wsgen] [declaring class has WebSevice: false]
 775     [wsgen] [returning: true]
 776     [wsgen] [WrapperGen - method: getLimits()]
 777     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 778     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 779     [wsgen] compbio/data/msa/jaxws/Align.java
 780     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 781     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 782     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 783     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 784     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 785     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 786     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 787     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 788     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 789     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 790     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 791     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 792     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 793     [wsgen] compbio/data/msa/jaxws/GetResult.java
 794     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 795     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 796     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 797     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 798     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 799     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 800     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 801     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 802     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 803     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 804     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 805     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 806     [wsgen] Note:       ap round: 2
 807     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.TcoffeeWS
 808     [wsgen] Note:       ap round: 1
 809     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
 810     [wsgen] [should process method: align hasWebMethods: false ]
 811     [wsgen] [endpointReferencesInterface: true]
 812     [wsgen] [declaring class has WebSevice: true]
 813     [wsgen] [returning: true]
 814     [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
 815     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 816     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
 817     [wsgen] [should process method: customAlign hasWebMethods: false ]
 818     [wsgen] [endpointReferencesInterface: true]
 819     [wsgen] [declaring class has WebSevice: true]
 820     [wsgen] [returning: true]
 821     [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 822     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 823     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
 824     [wsgen] [should process method: presetAlign hasWebMethods: false ]
 825     [wsgen] [endpointReferencesInterface: true]
 826     [wsgen] [declaring class has WebSevice: true]
 827     [wsgen] [returning: true]
 828     [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 829     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 830     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
 831     [wsgen] [should process method: getResult hasWebMethods: false ]
 832     [wsgen] [endpointReferencesInterface: true]
 833     [wsgen] [declaring class has WebSevice: true]
 834     [wsgen] [returning: true]
 835     [wsgen] [WrapperGen - method: getResult(java.lang.String)]
 836     [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
 837     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
 838     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 839     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 840     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 841     [wsgen] [endpointReferencesInterface: true]
 842     [wsgen] [declaring class has WebSevice: false]
 843     [wsgen] [returning: true]
 844     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 845     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 846     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 847     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 848     [wsgen] [endpointReferencesInterface: true]
 849     [wsgen] [declaring class has WebSevice: false]
 850     [wsgen] [returning: true]
 851     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 852     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 853     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 854     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 855     [wsgen] [endpointReferencesInterface: true]
 856     [wsgen] [declaring class has WebSevice: false]
 857     [wsgen] [returning: true]
 858     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 859     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 860     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 861     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 862     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 863     [wsgen] [endpointReferencesInterface: true]
 864     [wsgen] [declaring class has WebSevice: false]
 865     [wsgen] [returning: true]
 866     [wsgen] [WrapperGen - method: getRunnerOptions()]
 867     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 868     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 869     [wsgen] [should process method: getPresets hasWebMethods: false ]
 870     [wsgen] [endpointReferencesInterface: true]
 871     [wsgen] [declaring class has WebSevice: false]
 872     [wsgen] [returning: true]
 873     [wsgen] [WrapperGen - method: getPresets()]
 874     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 875     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 876     [wsgen] [should process method: getLimit hasWebMethods: false ]
 877     [wsgen] [endpointReferencesInterface: true]
 878     [wsgen] [declaring class has WebSevice: false]
 879     [wsgen] [returning: true]
 880     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 881     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 882     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 883     [wsgen] [should process method: getLimits hasWebMethods: false ]
 884     [wsgen] [endpointReferencesInterface: true]
 885     [wsgen] [declaring class has WebSevice: false]
 886     [wsgen] [returning: true]
 887     [wsgen] [WrapperGen - method: getLimits()]
 888     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 889     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
 890     [wsgen] compbio/data/msa/jaxws/Align.java
 891     [wsgen] compbio/data/msa/jaxws/AlignResponse.java
 892     [wsgen] compbio/data/msa/jaxws/CancelJob.java
 893     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
 894     [wsgen] compbio/data/msa/jaxws/CustomAlign.java
 895     [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
 896     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
 897     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
 898     [wsgen] compbio/data/msa/jaxws/GetLimit.java
 899     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
 900     [wsgen] compbio/data/msa/jaxws/GetLimits.java
 901     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
 902     [wsgen] compbio/data/msa/jaxws/GetPresets.java
 903     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
 904     [wsgen] compbio/data/msa/jaxws/GetResult.java
 905     [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
 906     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
 907     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
 908     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
 909     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
 910     [wsgen] compbio/data/msa/jaxws/PresetAlign.java
 911     [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
 912     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
 913     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
 914     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
 915     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
 916     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
 917     [wsgen] Note:       ap round: 2
 918     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.DisemblWS
 919     [wsgen] Note:       ap round: 1
 920     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
 921     [wsgen] [should process method: analize hasWebMethods: false ]
 922     [wsgen] [endpointReferencesInterface: true]
 923     [wsgen] [declaring class has WebSevice: true]
 924     [wsgen] [returning: true]
 925     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
 926     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 927     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
 928     [wsgen] [should process method: customAnalize hasWebMethods: false ]
 929     [wsgen] [endpointReferencesInterface: true]
 930     [wsgen] [declaring class has WebSevice: true]
 931     [wsgen] [returning: true]
 932     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
 933     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 934     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
 935     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
 936     [wsgen] [endpointReferencesInterface: true]
 937     [wsgen] [declaring class has WebSevice: true]
 938     [wsgen] [returning: true]
 939     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
 940     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 941     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
 942     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
 943     [wsgen] [endpointReferencesInterface: true]
 944     [wsgen] [declaring class has WebSevice: true]
 945     [wsgen] [returning: true]
 946     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
 947     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
 948     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
 949     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
 950     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
 951     [wsgen] [should process method: cancelJob hasWebMethods: false ]
 952     [wsgen] [endpointReferencesInterface: true]
 953     [wsgen] [declaring class has WebSevice: false]
 954     [wsgen] [returning: true]
 955     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
 956     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 957     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
 958     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
 959     [wsgen] [endpointReferencesInterface: true]
 960     [wsgen] [declaring class has WebSevice: false]
 961     [wsgen] [returning: true]
 962     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
 963     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 964     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
 965     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
 966     [wsgen] [endpointReferencesInterface: true]
 967     [wsgen] [declaring class has WebSevice: false]
 968     [wsgen] [returning: true]
 969     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
 970     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
 971     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
 972     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
 973     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
 974     [wsgen] [endpointReferencesInterface: true]
 975     [wsgen] [declaring class has WebSevice: false]
 976     [wsgen] [returning: true]
 977     [wsgen] [WrapperGen - method: getRunnerOptions()]
 978     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 979     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
 980     [wsgen] [should process method: getPresets hasWebMethods: false ]
 981     [wsgen] [endpointReferencesInterface: true]
 982     [wsgen] [declaring class has WebSevice: false]
 983     [wsgen] [returning: true]
 984     [wsgen] [WrapperGen - method: getPresets()]
 985     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 986     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
 987     [wsgen] [should process method: getLimit hasWebMethods: false ]
 988     [wsgen] [endpointReferencesInterface: true]
 989     [wsgen] [declaring class has WebSevice: false]
 990     [wsgen] [returning: true]
 991     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
 992     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
 993     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
 994     [wsgen] [should process method: getLimits hasWebMethods: false ]
 995     [wsgen] [endpointReferencesInterface: true]
 996     [wsgen] [declaring class has WebSevice: false]
 997     [wsgen] [returning: true]
 998     [wsgen] [WrapperGen - method: getLimits()]
 999     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1000     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1001     [wsgen] compbio/data/msa/jaxws/Analize.java
1002     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1003     [wsgen] compbio/data/msa/jaxws/CancelJob.java
1004     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1005     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1006     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1007     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1008     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1009     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1010     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1011     [wsgen] compbio/data/msa/jaxws/GetLimit.java
1012     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1013     [wsgen] compbio/data/msa/jaxws/GetLimits.java
1014     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1015     [wsgen] compbio/data/msa/jaxws/GetPresets.java
1016     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1017     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1018     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1019     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1020     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1021     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1022     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1023     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1024     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1025     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1026     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1027     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1028     [wsgen] Note:       ap round: 2
1029     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GlobPlotWS
1030     [wsgen] Note:       ap round: 1
1031     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1032     [wsgen] [should process method: analize hasWebMethods: false ]
1033     [wsgen] [endpointReferencesInterface: true]
1034     [wsgen] [declaring class has WebSevice: true]
1035     [wsgen] [returning: true]
1036     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1037     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1038     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1039     [wsgen] [should process method: customAnalize hasWebMethods: false ]
1040     [wsgen] [endpointReferencesInterface: true]
1041     [wsgen] [declaring class has WebSevice: true]
1042     [wsgen] [returning: true]
1043     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1044     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1045     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1046     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1047     [wsgen] [endpointReferencesInterface: true]
1048     [wsgen] [declaring class has WebSevice: true]
1049     [wsgen] [returning: true]
1050     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1051     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1052     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1053     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1054     [wsgen] [endpointReferencesInterface: true]
1055     [wsgen] [declaring class has WebSevice: true]
1056     [wsgen] [returning: true]
1057     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1058     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1059     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1060     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1061     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1062     [wsgen] [should process method: cancelJob hasWebMethods: false ]
1063     [wsgen] [endpointReferencesInterface: true]
1064     [wsgen] [declaring class has WebSevice: false]
1065     [wsgen] [returning: true]
1066     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1067     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1068     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1069     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1070     [wsgen] [endpointReferencesInterface: true]
1071     [wsgen] [declaring class has WebSevice: false]
1072     [wsgen] [returning: true]
1073     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1074     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1075     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1076     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1077     [wsgen] [endpointReferencesInterface: true]
1078     [wsgen] [declaring class has WebSevice: false]
1079     [wsgen] [returning: true]
1080     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1081     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1082     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1083     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1084     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1085     [wsgen] [endpointReferencesInterface: true]
1086     [wsgen] [declaring class has WebSevice: false]
1087     [wsgen] [returning: true]
1088     [wsgen] [WrapperGen - method: getRunnerOptions()]
1089     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1090     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1091     [wsgen] [should process method: getPresets hasWebMethods: false ]
1092     [wsgen] [endpointReferencesInterface: true]
1093     [wsgen] [declaring class has WebSevice: false]
1094     [wsgen] [returning: true]
1095     [wsgen] [WrapperGen - method: getPresets()]
1096     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1097     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1098     [wsgen] [should process method: getLimit hasWebMethods: false ]
1099     [wsgen] [endpointReferencesInterface: true]
1100     [wsgen] [declaring class has WebSevice: false]
1101     [wsgen] [returning: true]
1102     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1103     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1104     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1105     [wsgen] [should process method: getLimits hasWebMethods: false ]
1106     [wsgen] [endpointReferencesInterface: true]
1107     [wsgen] [declaring class has WebSevice: false]
1108     [wsgen] [returning: true]
1109     [wsgen] [WrapperGen - method: getLimits()]
1110     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1111     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1112     [wsgen] compbio/data/msa/jaxws/Analize.java
1113     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1114     [wsgen] compbio/data/msa/jaxws/CancelJob.java
1115     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1116     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1117     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1118     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1119     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1120     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1121     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1122     [wsgen] compbio/data/msa/jaxws/GetLimit.java
1123     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1124     [wsgen] compbio/data/msa/jaxws/GetLimits.java
1125     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1126     [wsgen] compbio/data/msa/jaxws/GetPresets.java
1127     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1128     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1129     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1130     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1131     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1132     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1133     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1134     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1135     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1136     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1137     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1138     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1139     [wsgen] Note:       ap round: 2
1140     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JronnWS
1141     [wsgen] Note:       ap round: 1
1142     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1143     [wsgen] [should process method: analize hasWebMethods: false ]
1144     [wsgen] [endpointReferencesInterface: true]
1145     [wsgen] [declaring class has WebSevice: true]
1146     [wsgen] [returning: true]
1147     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1148     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1149     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1150     [wsgen] [should process method: customAnalize hasWebMethods: false ]
1151     [wsgen] [endpointReferencesInterface: true]
1152     [wsgen] [declaring class has WebSevice: true]
1153     [wsgen] [returning: true]
1154     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1155     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1156     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1157     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1158     [wsgen] [endpointReferencesInterface: true]
1159     [wsgen] [declaring class has WebSevice: true]
1160     [wsgen] [returning: true]
1161     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1162     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1163     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1164     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1165     [wsgen] [endpointReferencesInterface: true]
1166     [wsgen] [declaring class has WebSevice: true]
1167     [wsgen] [returning: true]
1168     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1169     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1170     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1171     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1172     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1173     [wsgen] [should process method: cancelJob hasWebMethods: false ]
1174     [wsgen] [endpointReferencesInterface: true]
1175     [wsgen] [declaring class has WebSevice: false]
1176     [wsgen] [returning: true]
1177     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1178     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1179     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1180     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1181     [wsgen] [endpointReferencesInterface: true]
1182     [wsgen] [declaring class has WebSevice: false]
1183     [wsgen] [returning: true]
1184     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1185     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1186     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1187     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1188     [wsgen] [endpointReferencesInterface: true]
1189     [wsgen] [declaring class has WebSevice: false]
1190     [wsgen] [returning: true]
1191     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1192     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1193     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1194     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1195     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1196     [wsgen] [endpointReferencesInterface: true]
1197     [wsgen] [declaring class has WebSevice: false]
1198     [wsgen] [returning: true]
1199     [wsgen] [WrapperGen - method: getRunnerOptions()]
1200     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1201     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1202     [wsgen] [should process method: getPresets hasWebMethods: false ]
1203     [wsgen] [endpointReferencesInterface: true]
1204     [wsgen] [declaring class has WebSevice: false]
1205     [wsgen] [returning: true]
1206     [wsgen] [WrapperGen - method: getPresets()]
1207     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1208     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1209     [wsgen] [should process method: getLimit hasWebMethods: false ]
1210     [wsgen] [endpointReferencesInterface: true]
1211     [wsgen] [declaring class has WebSevice: false]
1212     [wsgen] [returning: true]
1213     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1214     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1215     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1216     [wsgen] [should process method: getLimits hasWebMethods: false ]
1217     [wsgen] [endpointReferencesInterface: true]
1218     [wsgen] [declaring class has WebSevice: false]
1219     [wsgen] [returning: true]
1220     [wsgen] [WrapperGen - method: getLimits()]
1221     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1222     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1223     [wsgen] compbio/data/msa/jaxws/Analize.java
1224     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1225     [wsgen] compbio/data/msa/jaxws/CancelJob.java
1226     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1227     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1228     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1229     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1230     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1231     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1232     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1233     [wsgen] compbio/data/msa/jaxws/GetLimit.java
1234     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1235     [wsgen] compbio/data/msa/jaxws/GetLimits.java
1236     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1237     [wsgen] compbio/data/msa/jaxws/GetPresets.java
1238     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1239     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1240     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1241     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1242     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1243     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1244     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1245     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1246     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1247     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1248     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1249     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1250     [wsgen] Note:       ap round: 2
1251     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.IUPredWS
1252     [wsgen] Note:       ap round: 1
1253     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1254     [wsgen] [should process method: analize hasWebMethods: false ]
1255     [wsgen] [endpointReferencesInterface: true]
1256     [wsgen] [declaring class has WebSevice: true]
1257     [wsgen] [returning: true]
1258     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1259     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1260     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1261     [wsgen] [should process method: customAnalize hasWebMethods: false ]
1262     [wsgen] [endpointReferencesInterface: true]
1263     [wsgen] [declaring class has WebSevice: true]
1264     [wsgen] [returning: true]
1265     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1266     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1267     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1268     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1269     [wsgen] [endpointReferencesInterface: true]
1270     [wsgen] [declaring class has WebSevice: true]
1271     [wsgen] [returning: true]
1272     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1273     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1274     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1275     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1276     [wsgen] [endpointReferencesInterface: true]
1277     [wsgen] [declaring class has WebSevice: true]
1278     [wsgen] [returning: true]
1279     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1280     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1281     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1282     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1283     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1284     [wsgen] [should process method: cancelJob hasWebMethods: false ]
1285     [wsgen] [endpointReferencesInterface: true]
1286     [wsgen] [declaring class has WebSevice: false]
1287     [wsgen] [returning: true]
1288     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1289     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1290     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1291     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1292     [wsgen] [endpointReferencesInterface: true]
1293     [wsgen] [declaring class has WebSevice: false]
1294     [wsgen] [returning: true]
1295     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1296     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1297     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1298     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1299     [wsgen] [endpointReferencesInterface: true]
1300     [wsgen] [declaring class has WebSevice: false]
1301     [wsgen] [returning: true]
1302     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1303     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1304     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1305     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1306     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1307     [wsgen] [endpointReferencesInterface: true]
1308     [wsgen] [declaring class has WebSevice: false]
1309     [wsgen] [returning: true]
1310     [wsgen] [WrapperGen - method: getRunnerOptions()]
1311     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1312     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1313     [wsgen] [should process method: getPresets hasWebMethods: false ]
1314     [wsgen] [endpointReferencesInterface: true]
1315     [wsgen] [declaring class has WebSevice: false]
1316     [wsgen] [returning: true]
1317     [wsgen] [WrapperGen - method: getPresets()]
1318     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1319     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1320     [wsgen] [should process method: getLimit hasWebMethods: false ]
1321     [wsgen] [endpointReferencesInterface: true]
1322     [wsgen] [declaring class has WebSevice: false]
1323     [wsgen] [returning: true]
1324     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1325     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1326     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1327     [wsgen] [should process method: getLimits hasWebMethods: false ]
1328     [wsgen] [endpointReferencesInterface: true]
1329     [wsgen] [declaring class has WebSevice: false]
1330     [wsgen] [returning: true]
1331     [wsgen] [WrapperGen - method: getLimits()]
1332     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1333     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1334     [wsgen] compbio/data/msa/jaxws/Analize.java
1335     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1336     [wsgen] compbio/data/msa/jaxws/CancelJob.java
1337     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1338     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1339     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1340     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1341     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1342     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1343     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1344     [wsgen] compbio/data/msa/jaxws/GetLimit.java
1345     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1346     [wsgen] compbio/data/msa/jaxws/GetLimits.java
1347     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1348     [wsgen] compbio/data/msa/jaxws/GetPresets.java
1349     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1350     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1351     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1352     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1353     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1354     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1355     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1356     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1357     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1358     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1359     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1360     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1361     [wsgen] Note:       ap round: 2
1362     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RegistryWS
1363     [wsgen] Note:       ap round: 1
1364     [wsgen] [ProcessedMethods Interface: compbio.data.msa.RegistryWS]
1365     [wsgen] [should process method: getSupportedServices hasWebMethods: false ]
1366     [wsgen] [endpointReferencesInterface: true]
1367     [wsgen] [declaring class has WebSevice: true]
1368     [wsgen] [returning: true]
1369     [wsgen] [WrapperGen - method: getSupportedServices()]
1370     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1371     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetSupportedServices]
1372     [wsgen] [should process method: getLastTested hasWebMethods: false ]
1373     [wsgen] [endpointReferencesInterface: true]
1374     [wsgen] [declaring class has WebSevice: true]
1375     [wsgen] [returning: true]
1376     [wsgen] [WrapperGen - method: getLastTested(compbio.ws.client.Services)]
1377     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1378     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTested]
1379     [wsgen] [should process method: getLastTestedOn hasWebMethods: false ]
1380     [wsgen] [endpointReferencesInterface: true]
1381     [wsgen] [declaring class has WebSevice: true]
1382     [wsgen] [returning: true]
1383     [wsgen] [WrapperGen - method: getLastTestedOn(compbio.ws.client.Services)]
1384     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1385     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTestedOn]
1386     [wsgen] [should process method: testAllServices hasWebMethods: false ]
1387     [wsgen] [endpointReferencesInterface: true]
1388     [wsgen] [declaring class has WebSevice: true]
1389     [wsgen] [returning: true]
1390     [wsgen] [WrapperGen - method: testAllServices()]
1391     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1392     [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestAllServices]
1393     [wsgen] [should process method: testService hasWebMethods: false ]
1394     [wsgen] [endpointReferencesInterface: true]
1395     [wsgen] [declaring class has WebSevice: true]
1396     [wsgen] [returning: true]
1397     [wsgen] [WrapperGen - method: testService(compbio.ws.client.Services)]
1398     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1399     [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestService]
1400     [wsgen] [should process method: isOperating hasWebMethods: false ]
1401     [wsgen] [endpointReferencesInterface: true]
1402     [wsgen] [declaring class has WebSevice: true]
1403     [wsgen] [returning: true]
1404     [wsgen] [WrapperGen - method: isOperating(compbio.ws.client.Services)]
1405     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1406     [wsgen] [requestWrapper: compbio.data.msa.jaxws.IsOperating]
1407     [wsgen] [should process method: getServiceDescription hasWebMethods: false ]
1408     [wsgen] [endpointReferencesInterface: true]
1409     [wsgen] [declaring class has WebSevice: true]
1410     [wsgen] [returning: true]
1411     [wsgen] [WrapperGen - method: getServiceDescription(compbio.ws.client.Services)]
1412     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1413     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceDescription]
1414     [wsgen] [should process method: getServiceCategories hasWebMethods: false ]
1415     [wsgen] [endpointReferencesInterface: true]
1416     [wsgen] [declaring class has WebSevice: true]
1417     [wsgen] [returning: true]
1418     [wsgen] [WrapperGen - method: getServiceCategories()]
1419     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1420     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceCategories]
1421     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1422     [wsgen] compbio/data/msa/jaxws/GetLastTested.java
1423     [wsgen] compbio/data/msa/jaxws/GetLastTestedOn.java
1424     [wsgen] compbio/data/msa/jaxws/GetLastTestedOnResponse.java
1425     [wsgen] compbio/data/msa/jaxws/GetLastTestedResponse.java
1426     [wsgen] compbio/data/msa/jaxws/GetServiceCategories.java
1427     [wsgen] compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
1428     [wsgen] compbio/data/msa/jaxws/GetServiceDescription.java
1429     [wsgen] compbio/data/msa/jaxws/GetServiceDescriptionResponse.java
1430     [wsgen] compbio/data/msa/jaxws/GetSupportedServices.java
1431     [wsgen] compbio/data/msa/jaxws/GetSupportedServicesResponse.java
1432     [wsgen] compbio/data/msa/jaxws/IsOperating.java
1433     [wsgen] compbio/data/msa/jaxws/IsOperatingResponse.java
1434     [wsgen] compbio/data/msa/jaxws/TestAllServices.java
1435     [wsgen] compbio/data/msa/jaxws/TestAllServicesResponse.java
1436     [wsgen] compbio/data/msa/jaxws/TestService.java
1437     [wsgen] compbio/data/msa/jaxws/TestServiceResponse.java
1438     [wsgen] Note:       ap round: 2
1439     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RNAalifoldWS
1440     [wsgen] Note:       ap round: 1
1441     [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1442     [wsgen] [should process method: analize hasWebMethods: false ]
1443     [wsgen] [endpointReferencesInterface: true]
1444     [wsgen] [declaring class has WebSevice: true]
1445     [wsgen] [returning: true]
1446     [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1447     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1448     [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1449     [wsgen] [should process method: customAnalize hasWebMethods: false ]
1450     [wsgen] [endpointReferencesInterface: true]
1451     [wsgen] [declaring class has WebSevice: true]
1452     [wsgen] [returning: true]
1453     [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1454     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1455     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1456     [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1457     [wsgen] [endpointReferencesInterface: true]
1458     [wsgen] [declaring class has WebSevice: true]
1459     [wsgen] [returning: true]
1460     [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1461     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1462     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1463     [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1464     [wsgen] [endpointReferencesInterface: true]
1465     [wsgen] [declaring class has WebSevice: true]
1466     [wsgen] [returning: true]
1467     [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1468     [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1469     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1470     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1471     [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1472     [wsgen] [should process method: cancelJob hasWebMethods: false ]
1473     [wsgen] [endpointReferencesInterface: true]
1474     [wsgen] [declaring class has WebSevice: false]
1475     [wsgen] [returning: true]
1476     [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1477     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1478     [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1479     [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1480     [wsgen] [endpointReferencesInterface: true]
1481     [wsgen] [declaring class has WebSevice: false]
1482     [wsgen] [returning: true]
1483     [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1484     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1485     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1486     [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1487     [wsgen] [endpointReferencesInterface: true]
1488     [wsgen] [declaring class has WebSevice: false]
1489     [wsgen] [returning: true]
1490     [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1491     [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1492     [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1493     [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1494     [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1495     [wsgen] [endpointReferencesInterface: true]
1496     [wsgen] [declaring class has WebSevice: false]
1497     [wsgen] [returning: true]
1498     [wsgen] [WrapperGen - method: getRunnerOptions()]
1499     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1500     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1501     [wsgen] [should process method: getPresets hasWebMethods: false ]
1502     [wsgen] [endpointReferencesInterface: true]
1503     [wsgen] [declaring class has WebSevice: false]
1504     [wsgen] [returning: true]
1505     [wsgen] [WrapperGen - method: getPresets()]
1506     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1507     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1508     [wsgen] [should process method: getLimit hasWebMethods: false ]
1509     [wsgen] [endpointReferencesInterface: true]
1510     [wsgen] [declaring class has WebSevice: false]
1511     [wsgen] [returning: true]
1512     [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1513     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1514     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1515     [wsgen] [should process method: getLimits hasWebMethods: false ]
1516     [wsgen] [endpointReferencesInterface: true]
1517     [wsgen] [declaring class has WebSevice: false]
1518     [wsgen] [returning: true]
1519     [wsgen] [WrapperGen - method: getLimits()]
1520     [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1521     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1522     [wsgen] compbio/data/msa/jaxws/Analize.java
1523     [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1524     [wsgen] compbio/data/msa/jaxws/CancelJob.java
1525     [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1526     [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1527     [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1528     [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1529     [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1530     [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1531     [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1532     [wsgen] compbio/data/msa/jaxws/GetLimit.java
1533     [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1534     [wsgen] compbio/data/msa/jaxws/GetLimits.java
1535     [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1536     [wsgen] compbio/data/msa/jaxws/GetPresets.java
1537     [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1538     [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1539     [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1540     [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1541     [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1542     [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1543     [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1544     [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1545     [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1546     [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1547     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1548     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1549     [wsgen] Note:       ap round: 2
1550
1551 BUILD SUCCESSFUL
1552 Total time: 9 seconds