wsbuild.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 \r
   3 <project default="build-server" name="compbio-ws" basedir=".">\r
   4 \r
   5         <!-- java -->\r
   6         <property name="classes" location="${basedir}/WEB-INF/classes" />\r
   7         <property name="lib.path" location="${basedir}/WEB-INF/lib" />\r
   8 \r
   9         <path id="classes.path">\r
  10                 <pathelement location="${classes}" />\r
  11         </path>\r
  12 \r
  13         <!-- add libraries -->\r
  14         <path id="project.classpath">\r
  15                 <fileset dir="${lib.path}">\r
  16                         <include name="*.jar" />\r
  17                 </fileset>\r
  18         </path>\r
  19 \r
  20         <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />\r
  21         <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />\r
  22         <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />\r
  23         <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />\r
  24         <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />\r
  25         <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />\r
  26         <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />\r
  27         <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />\r
  28         <property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />\r
  29         <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />\r
  30         <property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />\r
  31         <property name="rnaalifold.wsdl" location="${wsdl.dir}/RNAalifold.wsdl" />  \r
  32         <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">\r
  33                 <classpath refid="project.classpath" />\r
  34         </taskdef>\r
  35 \r
  36         <target name="build-server">\r
  37                 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->\r
  38                         <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />\r
  39 \r
  40                         <mkdir dir="${server.artifacts.dir}" />\r
  41                         <mkdir dir="${wsdl.dir}" />\r
  42                         <delete quiet="false" verbose="true" failonerror="false">\r
  43                                 <fileset dir="${server.artifacts.dir}">\r
  44                                         <include name="*.java" />\r
  45                                 </fileset>\r
  46                                 <fileset dir="${wsdl.dir}">\r
  47                                 </fileset>\r
  48                         </delete>\r
  49                         <!-- destdir - Where to put generated classes -->\r
  50                         <!-- sourcedestdir -  Where to put generated source files -->\r
  51                         <!-- resourcedestdir - Where to put generated source files -->\r
  52 \r
  53                 <wsgen sei="compbio.ws.server.AAConWS" \r
  54                                 sourcedestdir="${basedir}/webservices" \r
  55                                 destdir="${classes}" \r
  56                                 resourcedestdir="${wsdl.dir}" \r
  57                                 keep="true" genwsdl="true" \r
  58                                 extension="false" \r
  59                                 xendorsed="true" \r
  60                                 verbose="true">\r
  61                                 <classpath refid="classes.path" />\r
  62                                 <classpath refid="project.classpath" />\r
  63                 </wsgen>\r
  64                 <wsgen sei="compbio.ws.server.ClustalWS" \r
  65                                 sourcedestdir="${basedir}/webservices" \r
  66                                 destdir="${classes}" \r
  67                                 resourcedestdir="${wsdl.dir}" \r
  68                                 keep="true" genwsdl="true" \r
  69                                 extension="false" \r
  70                                 xendorsed="true"\r
  71                                 verbose="true">\r
  72                                 <classpath refid="classes.path" />\r
  73                                 <classpath refid="project.classpath" />\r
  74                 </wsgen>\r
  75                 <wsgen sei="compbio.ws.server.MuscleWS" \r
  76                                 sourcedestdir="${basedir}/webservices" \r
  77                                 destdir="${classes}" \r
  78                                 resourcedestdir="${wsdl.dir}" \r
  79                                 keep="true" genwsdl="true" \r
  80                                 extension="false"\r
  81                                 xendorsed="true"\r
  82                                 verbose="true">\r
  83                                 <classpath refid="classes.path" />\r
  84                                 <classpath refid="project.classpath" />\r
  85                 </wsgen>\r
  86                 <wsgen sei="compbio.ws.server.MafftWS" \r
  87                                 sourcedestdir="${basedir}/webservices" \r
  88                                 destdir="${classes}" \r
  89                                 resourcedestdir="${wsdl.dir}" \r
  90                                 keep="true" genwsdl="true" \r
  91                                 extension="false"\r
  92                                 xendorsed="true"\r
  93                                 verbose="true">\r
  94                                 <classpath refid="classes.path" />\r
  95                                 <classpath refid="project.classpath" />\r
  96                 </wsgen>\r
  97                 <wsgen sei="compbio.ws.server.TcoffeeWS" \r
  98                                 sourcedestdir="${basedir}/webservices" \r
  99                                 destdir="${classes}" \r
 100                                 resourcedestdir="${wsdl.dir}" \r
 101                                 keep="true" genwsdl="true" \r
 102                                 extension="false" \r
 103                                 xendorsed="true" \r
 104                                 verbose="true">\r
 105                                 <classpath refid="classes.path" />\r
 106                                 <classpath refid="project.classpath" />\r
 107                 </wsgen>\r
 108                 <wsgen sei="compbio.ws.server.DisemblWS" \r
 109                                 sourcedestdir="${basedir}/webservices" \r
 110                                 destdir="${classes}" \r
 111                                 resourcedestdir="${wsdl.dir}" \r
 112                                 keep="true" genwsdl="true" \r
 113                                 extension="false" \r
 114                                 xendorsed="true" \r
 115                                 verbose="true">\r
 116                                 <classpath refid="classes.path" />\r
 117                                 <classpath refid="project.classpath" />\r
 118                 </wsgen>\r
 119                 <wsgen sei="compbio.ws.server.GlobPlotWS" \r
 120                                 sourcedestdir="${basedir}/webservices" \r
 121                                 destdir="${classes}" \r
 122                                 resourcedestdir="${wsdl.dir}" \r
 123                                 keep="true" genwsdl="true" \r
 124                                 extension="false" \r
 125                                 xendorsed="true" \r
 126                                 verbose="true">\r
 127                                 <classpath refid="classes.path" />\r
 128                                 <classpath refid="project.classpath" />\r
 129                 </wsgen>\r
 130                 <wsgen sei="compbio.ws.server.JronnWS" \r
 131                                 sourcedestdir="${basedir}/webservices" \r
 132                                 destdir="${classes}" \r
 133                                 resourcedestdir="${wsdl.dir}" \r
 134                                 keep="true" genwsdl="true" \r
 135                                 extension="false" \r
 136                                 xendorsed="true" \r
 137                                 verbose="true">\r
 138                                 <classpath refid="classes.path" />\r
 139                                 <classpath refid="project.classpath" />\r
 140                 </wsgen>\r
 141                 <wsgen sei="compbio.ws.server.IUPredWS" \r
 142                                 sourcedestdir="${basedir}/webservices" \r
 143                                 destdir="${classes}" \r
 144                                 resourcedestdir="${wsdl.dir}" \r
 145                                 keep="true" genwsdl="true" \r
 146                                 extension="false" \r
 147                                 xendorsed="true" \r
 148                                 verbose="true">\r
 149                                 <classpath refid="classes.path" />\r
 150                                 <classpath refid="project.classpath" />\r
 151                 </wsgen>\r
 152                 <wsgen sei="compbio.ws.server.RegistryWS" \r
 153                                 sourcedestdir="${basedir}/webservices" \r
 154                                 destdir="${classes}" \r
 155                                 resourcedestdir="${wsdl.dir}" \r
 156                                 keep="true" genwsdl="true" \r
 157                                 extension="false" \r
 158                                 xendorsed="true" \r
 159                                 verbose="true">\r
 160                                 <classpath refid="classes.path" />\r
 161                                 <classpath refid="project.classpath" />\r
 162                 </wsgen>\r
 163                 \r
 164                 <wsgen sei="compbio.ws.server.RNAalifoldWS"\r
 165                                 sourcedestdir="${basedir}/webservices"\r
 166                                 destdir="${classes}"\r
 167                                 resourcedestdir="${wsdl.dir}"\r
 168                                 keep="true" genwsdl="true"\r
 169                                 extension="false"\r
 170                                 xendorsed="true"\r
 171                                 verbose="true">\r
 172                                 <classpath refid="classes.path" />\r
 173                                 <classpath refid="project.classpath" />\r
 174                 </wsgen>\r
 175                 \r
 176         </target>\r
 177                 \r
 178 \r
 179         <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">\r
 180                 <classpath refid="project.classpath" />\r
 181         </taskdef>\r
 182 \r
 183         <target name="build-clients">\r
 184                         <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />\r
 185 \r
 186                         <mkdir dir="${client.artifacts.dir}" />\r
 187                         <delete quiet="false" verbose="true" failonerror="true">\r
 188                                 <fileset dir="${client.artifacts.dir}">\r
 189                                         <include name="*.java" />\r
 190                                 </fileset>\r
 191                         </delete>\r
 192                         <wsimport wsdl="${clustal.wsdl}" \r
 193                                 sourcedestdir="${basedir}/webservices/" \r
 194                                 keep="true" extension="false" \r
 195                                 verbose="true" xnocompile="true" xendorsed="true"\r
 196                                 package="compbio.ws.client.stub" target="2.1"\r
 197                                 quiet="false">\r
 198                         </wsimport>\r
 199                         <wsimport wsdl="${muscle.wsdl}" \r
 200                                 sourcedestdir="${basedir}/webservices/" \r
 201                                 keep="true" extension="false" \r
 202                                 verbose="true" xnocompile="true" xendorsed="true"\r
 203                                 package="compbio.ws.client.stub" target="2.1"\r
 204                                 quiet="false">\r
 205                         </wsimport>\r
 206                         <wsimport wsdl="${mafft.wsdl}" \r
 207                                 sourcedestdir="${basedir}/webservices/" \r
 208                                 keep="true" extension="false" \r
 209                                 verbose="true" xnocompile="true" xendorsed="true"\r
 210                                 package="compbio.ws.client.stub" target="2.1"\r
 211                                 quiet="false">\r
 212                         </wsimport>\r
 213                         <wsimport wsdl="${tcoffee.wsdl}" \r
 214                                 sourcedestdir="${basedir}/webservices/" \r
 215                                 keep="true" extension="false" \r
 216                                 verbose="true" xnocompile="true" xendorsed="true"\r
 217                                 package="compbio.ws.client.stub" target="2.1"\r
 218                                 quiet="false">\r
 219                         </wsimport>\r
 220                         <wsimport wsdl="${iupred.wsdl}" \r
 221                                 sourcedestdir="${basedir}/webservices/" \r
 222                                 keep="true" extension="false" \r
 223                                 verbose="true" xnocompile="true" xendorsed="true"\r
 224                                 package="compbio.ws.client.stub" target="2.1"\r
 225                                 quiet="false">\r
 226                         </wsimport>\r
 227                         <wsimport wsdl="${registry.wsdl}" \r
 228                                 sourcedestdir="${basedir}/webservices/" \r
 229                                 keep="true" extension="false" \r
 230                                 verbose="true" xnocompile="true" xendorsed="true"\r
 231                                 package="compbio.ws.client.stub" target="2.1"\r
 232                                 quiet="false">\r
 233                         </wsimport>\r
 234                 \r
 235                         <wsimport wsdl="${rnaalifold.wsdl}" \r
 236                                 sourcedestdir="${basedir}/webservices/" \r
 237                                 keep="true" extension="false" \r
 238                                 verbose="true" xnocompile="true" xendorsed="true"\r
 239                                 package="compbio.ws.client.stub" target="2.1"\r
 240                                 quiet="false">\r
 241                         </wsimport>\r
 242                         \r
 243                 </target>\r
 244 \r
 245         <!-- \r
 246         <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">\r
 247                 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">\r
 248                         <classpath refid="project.classpath" />\r
 249                 </taskdef>\r
 250                 <mkdir dir="${basedir}/src/test" />\r
 251                 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">\r
 252                         <arg value="-Xcommons-lang" />\r
 253                 \r
 254                         <produces dir="${basedir}/src/test" />\r
 255                         <classpath refid="classes.path" />\r
 256                         <classpath>\r
 257                                         <fileset dir="${basedir}/lib">\r
 258                                                  //JAXB2 Basics library \r
 259                                                 <include name="jaxb2-basics-*.jar"/>\r
 260                                                  // JAXB2 Basics library dependencies \r
 261                                                 <include name="jaxb2-basics-runtime-*.jar"/>\r
 262                                                 <include name="jaxb2-basics-tools-*.jar"/>\r
 263                                                 <include name="commons-beanutils-*.jar"/>\r
 264                                                 <include name="commons-lang-*.jar"/>\r
 265                                                 <include name="commons-logging-*.jar"/>\r
 266                                         </fileset>\r
 267                                 </classpath>\r
 268                 </xjc>\r
 269         </target>\r
 270 \r
 271                                         -Xequals\r
 272                                         -XhashCode\r
 273                                         -Xcopyable\r
 274                                         -Xmergeable\r
 275 \r
 276         <target name="build-Clustal-client-from-live-server">\r
 277 \r
 278                 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl" \r
 279                         sourcedestdir="${basedir}/webservices/" \r
 280                         keep="true" \r
 281                         extension="false" \r
 282                         verbose="true" \r
 283                         xnocompile="true" \r
 284                         package="compbio.ws.client.stub" \r
 285                         quiet="false">\r
 286                 </wsimport>\r
 287         </target>\r
 288 \r
 289         <target name="build-Muscle-client-from-live-server">\r
 290                 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl" \r
 291                                         sourcedestdir="${basedir}/webservices/" \r
 292                                         keep="true" \r
 293                                         extension="false" \r
 294                                         verbose="true" \r
 295                                         xnocompile="true" \r
 296                                         package="compbio.ws.client.stub" \r
 297                                         quiet="false">\r
 298                 </wsimport>\r
 299         </target>\r
 300 \r
 301 \r
 302         <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">\r
 303                 <echo>Jar file: wsclient</echo>\r
 304                 <delete file="${basedir}/resources/wsclient.jar">\r
 305                 </delete>\r
 306                 <jar jarfile="${basedir}/resources/wsclient.jar">\r
 307                         <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />\r
 308                         <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />\r
 309                         <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />\r
 310                         <manifest>\r
 311                                 <attribute name="Built-By" value="${user.name}" />\r
 312                                 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />\r
 313                                 <attribute name="Class-Path" value="." />\r
 314                                 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />\r
 315                                 <attribute name="Implementation-Vendor" value="The PIMS team" />\r
 316                                 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />\r
 317                         </manifest>\r
 318                 </jar>\r
 319         </target>\r
 320 \r
 321 \r
 322         <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">\r
 323                 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">\r
 324                         <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />\r
 325                 </java>\r
 326         </target>\r
 327 \r
 328         <target name="run-client-class" description="THIS IS EXAMPLE ONLY">\r
 329                 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">\r
 330                         <classpath refid="project.classpath" />\r
 331                         <classpath refid="instrument.classpath" />\r
 332                 </java>\r
 333         </target>\r
 334 -->\r
 335 </project>\r
 336 \r