wsbuild.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 \r
   3 <project default="build-server" name="compbio-ws" basedir=".">\r
   4 \r
   5         <!-- java -->\r
   6         <property name="classes" location="${basedir}/WEB-INF/classes" />\r
   7         <property name="lib.path" location="${basedir}/WEB-INF/lib" />\r
   8 \r
   9         <path id="classes.path">\r
  10                 <pathelement location="${classes}" />\r
  11         </path>\r
  12 \r
  13         <!-- add libraries -->\r
  14         <path id="project.classpath">\r
  15                 <fileset dir="${lib.path}">\r
  16                         <include name="*.jar" />\r
  17                 </fileset>\r
  18         </path>\r
  19 \r
  20         <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />\r
  21         <property name="jpred.wsdl" location="${wsdl.dir}/JpredWS.wsdl" />\r
  22         <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />\r
  23         <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />\r
  24         <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />\r
  25         <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />\r
  26         <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />\r
  27         <property name="glprobs.wsdl" location="${wsdl.dir}/GLprobsWS.wsdl" />\r
  28         <property name="msaprobs.wsdl" location="${wsdl.dir}/MSAprobsWS.wsdl" />\r
  29 \r
  30         <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />\r
  31         <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />\r
  32         <property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />\r
  33         <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />\r
  34 \r
  35         <property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />\r
  36         <property name="rnaalifold.wsdl" location="${wsdl.dir}/RNAalifold.wsdl" />\r
  37 \r
  38         <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">\r
  39                 <classpath refid="project.classpath" />\r
  40         </taskdef>\r
  41 \r
  42         <target name="build-server">\r
  43                 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->\r
  44                 <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />\r
  45 \r
  46                 <mkdir dir="${server.artifacts.dir}" />\r
  47                 <mkdir dir="${wsdl.dir}" />\r
  48                 <delete quiet="false" verbose="true" failonerror="false">\r
  49                         <fileset dir="${server.artifacts.dir}">\r
  50                                 <include name="*.java" />\r
  51                         </fileset>\r
  52                         <fileset dir="${wsdl.dir}">\r
  53                         </fileset>\r
  54                 </delete>\r
  55 \r
  56                 <!-- destdir - Where to put generated classes -->\r
  57                 <!-- sourcedestdir -  Where to put generated source files -->\r
  58                 <!-- resourcedestdir - Where to put generated source files -->\r
  59                 <wsgen sei="compbio.ws.server.JpredWS"\r
  60                                 sourcedestdir="${basedir}/webservices"\r
  61                                 destdir="${classes}"\r
  62                                 resourcedestdir="${wsdl.dir}"\r
  63                                 keep="true"\r
  64                                 genwsdl="true"\r
  65                                 extension="false"\r
  66                                 xendorsed="true"\r
  67                                 verbose="true">\r
  68                                 <classpath refid="classes.path" />\r
  69                                 <classpath refid="project.classpath" />\r
  70                 </wsgen>\r
  71                 <wsgen sei="compbio.ws.server.AAConWS"\r
  72                                 sourcedestdir="${basedir}/webservices"\r
  73                                 destdir="${classes}"\r
  74                                 resourcedestdir="${wsdl.dir}"\r
  75                                 keep="true"\r
  76                                 genwsdl="true"\r
  77                                 extension="false"\r
  78                                 xendorsed="true"\r
  79                                 verbose="true">\r
  80                                 <classpath refid="classes.path" />\r
  81                                 <classpath refid="project.classpath" />\r
  82                 </wsgen>\r
  83                 <wsgen sei="compbio.ws.server.MSAprobsWS"\r
  84                                 sourcedestdir="${basedir}/webservices"\r
  85                                 destdir="${classes}"\r
  86                                 resourcedestdir="${wsdl.dir}"\r
  87                                 keep="true"\r
  88                                 genwsdl="true"\r
  89                                 extension="false"\r
  90                                 xendorsed="true"\r
  91                                 verbose="true">\r
  92                                 <classpath refid="classes.path" />\r
  93                                 <classpath refid="project.classpath" />\r
  94                 </wsgen>\r
  95                 <wsgen sei="compbio.ws.server.GLprobsWS"\r
  96                                 sourcedestdir="${basedir}/webservices"\r
  97                                 destdir="${classes}"\r
  98                                 resourcedestdir="${wsdl.dir}"\r
  99                                 keep="true"\r
 100                                 genwsdl="true"\r
 101                                 extension="false"\r
 102                                 xendorsed="true"\r
 103                                 verbose="true">\r
 104                                 <classpath refid="classes.path" />\r
 105                                 <classpath refid="project.classpath" />\r
 106                 </wsgen>\r
 107                 <wsgen sei="compbio.ws.server.ClustalWS"\r
 108                                 sourcedestdir="${basedir}/webservices"\r
 109                                 destdir="${classes}"\r
 110                                 resourcedestdir="${wsdl.dir}"\r
 111                                 keep="true"\r
 112                                 genwsdl="true"\r
 113                                 extension="false"\r
 114                                 xendorsed="true"\r
 115                                 verbose="true">\r
 116                                 <classpath refid="classes.path" />\r
 117                                 <classpath refid="project.classpath" />\r
 118                 </wsgen>\r
 119                 <wsgen sei="compbio.ws.server.MuscleWS"\r
 120                                 sourcedestdir="${basedir}/webservices"\r
 121                                 destdir="${classes}"\r
 122                                 resourcedestdir="${wsdl.dir}"\r
 123                                 keep="true"\r
 124                                 genwsdl="true"\r
 125                                 extension="false"\r
 126                                 xendorsed="true"\r
 127                                 verbose="true">\r
 128                                 <classpath refid="classes.path" />\r
 129                                 <classpath refid="project.classpath" />\r
 130                 </wsgen>\r
 131                 <wsgen sei="compbio.ws.server.MafftWS"\r
 132                                 sourcedestdir="${basedir}/webservices"\r
 133                                 destdir="${classes}"\r
 134                                 resourcedestdir="${wsdl.dir}"\r
 135                                 keep="true"\r
 136                                 genwsdl="true"\r
 137                                 extension="false"\r
 138                                 xendorsed="true"\r
 139                                 verbose="true">\r
 140                                 <classpath refid="classes.path" />\r
 141                                 <classpath refid="project.classpath" />\r
 142                 </wsgen>\r
 143                 <wsgen sei="compbio.ws.server.TcoffeeWS"\r
 144                                 sourcedestdir="${basedir}/webservices"\r
 145                                 destdir="${classes}"\r
 146                                 resourcedestdir="${wsdl.dir}"\r
 147                                 keep="true"\r
 148                                 genwsdl="true"\r
 149                                 extension="false"\r
 150                                 xendorsed="true"\r
 151                                 verbose="true">\r
 152                                 <classpath refid="classes.path" />\r
 153                                 <classpath refid="project.classpath" />\r
 154                 </wsgen>\r
 155                 <wsgen sei="compbio.ws.server.DisemblWS"\r
 156                                 sourcedestdir="${basedir}/webservices"\r
 157                                 destdir="${classes}"\r
 158                                 resourcedestdir="${wsdl.dir}"\r
 159                                 keep="true"\r
 160                                 genwsdl="true"\r
 161                                 extension="false"\r
 162                                 xendorsed="true"\r
 163                                 verbose="true">\r
 164                                 <classpath refid="classes.path" />\r
 165                                 <classpath refid="project.classpath" />\r
 166                 </wsgen>\r
 167                 <wsgen sei="compbio.ws.server.GlobPlotWS"\r
 168                                 sourcedestdir="${basedir}/webservices"\r
 169                                 destdir="${classes}"\r
 170                                 resourcedestdir="${wsdl.dir}"\r
 171                                 keep="true"\r
 172                                 genwsdl="true"\r
 173                                 extension="false"\r
 174                                 xendorsed="true"\r
 175                                 verbose="true">\r
 176                                 <classpath refid="classes.path" />\r
 177                                 <classpath refid="project.classpath" />\r
 178                 </wsgen>\r
 179                 <wsgen sei="compbio.ws.server.JronnWS"\r
 180                                 sourcedestdir="${basedir}/webservices"\r
 181                                 destdir="${classes}"\r
 182                                 resourcedestdir="${wsdl.dir}"\r
 183                                 keep="true"\r
 184                                 genwsdl="true"\r
 185                                 extension="false"\r
 186                                 xendorsed="true"\r
 187                                 verbose="true">\r
 188                                 <classpath refid="classes.path" />\r
 189                                 <classpath refid="project.classpath" />\r
 190                 </wsgen>\r
 191                 <wsgen sei="compbio.ws.server.IUPredWS"\r
 192                                 sourcedestdir="${basedir}/webservices"\r
 193                                 destdir="${classes}"\r
 194                                 resourcedestdir="${wsdl.dir}"\r
 195                                 keep="true"\r
 196                                 genwsdl="true"\r
 197                                 extension="false"\r
 198                                 xendorsed="true"\r
 199                                 verbose="true">\r
 200                                 <classpath refid="classes.path" />\r
 201                                 <classpath refid="project.classpath" />\r
 202                 </wsgen>\r
 203                 <wsgen sei="compbio.ws.server.RegistryWS"\r
 204                                 sourcedestdir="${basedir}/webservices"\r
 205                                 destdir="${classes}"\r
 206                                 resourcedestdir="${wsdl.dir}"\r
 207                                 keep="true"\r
 208                                 genwsdl="true"\r
 209                                 extension="false"\r
 210                                 xendorsed="true"\r
 211                                 verbose="true">\r
 212                                 <classpath refid="classes.path" />\r
 213                                 <classpath refid="project.classpath" />\r
 214                 </wsgen>\r
 215                 <wsgen sei="compbio.ws.server.RNAalifoldWS"\r
 216                                 sourcedestdir="${basedir}/webservices"\r
 217                                 destdir="${classes}"\r
 218                                 resourcedestdir="${wsdl.dir}"\r
 219                                 keep="true" genwsdl="true"\r
 220                                 extension="false"\r
 221                                 xendorsed="true"\r
 222                                 verbose="true">\r
 223                                 <classpath refid="classes.path" />\r
 224                                 <classpath refid="project.classpath" />\r
 225                 </wsgen>\r
 226         </target>\r
 227 \r
 228         <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">\r
 229                 <classpath refid="project.classpath" />\r
 230         </taskdef>\r
 231 \r
 232         <target name="build-clients">\r
 233                         <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />\r
 234 \r
 235                         <mkdir dir="${client.artifacts.dir}" />\r
 236                         <delete quiet="false" verbose="true" failonerror="true">\r
 237                                 <fileset dir="${client.artifacts.dir}">\r
 238                                         <include name="*.java" />\r
 239                                 </fileset>\r
 240                         </delete>\r
 241 \r
 242                         <wsimport wsdl="${clustal.wsdl}"\r
 243                                 sourcedestdir="${basedir}/webservices/"\r
 244                                 keep="true" extension="false"\r
 245                                 verbose="true" xnocompile="true" xendorsed="true"\r
 246                                 package="compbio.ws.client.stub" target="2.1"\r
 247                                 quiet="false">\r
 248                         </wsimport>\r
 249 \r
 250                         <wsimport wsdl="${muscle.wsdl}"\r
 251                                 sourcedestdir="${basedir}/webservices/"\r
 252                                 keep="true" extension="false"\r
 253                                 verbose="true" xnocompile="true" xendorsed="true"\r
 254                                 package="compbio.ws.client.stub" target="2.1"\r
 255                                 quiet="false">\r
 256                         </wsimport>\r
 257 \r
 258                         <wsimport wsdl="${mafft.wsdl}"\r
 259                                 sourcedestdir="${basedir}/webservices/"\r
 260                                 keep="true" extension="false"\r
 261                                 verbose="true" xnocompile="true" xendorsed="true"\r
 262                                 package="compbio.ws.client.stub" target="2.1"\r
 263                                 quiet="false">\r
 264                         </wsimport>\r
 265 \r
 266                         <wsimport wsdl="${tcoffee.wsdl}"\r
 267                                 sourcedestdir="${basedir}/webservices/"\r
 268                                 keep="true" extension="false"\r
 269                                 verbose="true" xnocompile="true" xendorsed="true"\r
 270                                 package="compbio.ws.client.stub" target="2.1"\r
 271                                 quiet="false">\r
 272                         </wsimport>\r
 273 \r
 274                         <wsimport wsdl="${iupred.wsdl}"\r
 275                                 sourcedestdir="${basedir}/webservices/"\r
 276                                 keep="true" extension="false"\r
 277                                 verbose="true" xnocompile="true" xendorsed="true"\r
 278                                 package="compbio.ws.client.stub" target="2.1"\r
 279                                 quiet="false">\r
 280                         </wsimport>\r
 281 \r
 282                         <wsimport wsdl="${registry.wsdl}"\r
 283                                 sourcedestdir="${basedir}/webservices/"\r
 284                                 keep="true" extension="false"\r
 285                                 verbose="true" xnocompile="true" xendorsed="true"\r
 286                                 package="compbio.ws.client.stub" target="2.1"\r
 287                                 quiet="false">\r
 288                         </wsimport>\r
 289 \r
 290                         <wsimport wsdl="${rnaalifold.wsdl}"\r
 291                                 sourcedestdir="${basedir}/webservices/"\r
 292                                 keep="true" extension="false"\r
 293                                 verbose="true" xnocompile="true" xendorsed="true"\r
 294                                 package="compbio.ws.client.stub" target="2.1"\r
 295                                 quiet="false">\r
 296                         </wsimport>\r
 297 \r
 298                 </target>\r
 299 \r
 300         <!-- \r
 301         <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">\r
 302                 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">\r
 303                         <classpath refid="project.classpath" />\r
 304                 </taskdef>\r
 305                 <mkdir dir="${basedir}/src/test" />\r
 306                 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">\r
 307                         <arg value="-Xcommons-lang" />\r
 308                 \r
 309                         <produces dir="${basedir}/src/test" />\r
 310                         <classpath refid="classes.path" />\r
 311                         <classpath>\r
 312                                         <fileset dir="${basedir}/lib">\r
 313                                                  //JAXB2 Basics library\r
 314                                                 <include name="jaxb2-basics-*.jar"/>\r
 315                                                  // JAXB2 Basics library dependencies\r
 316                                                 <include name="jaxb2-basics-runtime-*.jar"/>\r
 317                                                 <include name="jaxb2-basics-tools-*.jar"/>\r
 318                                                 <include name="commons-beanutils-*.jar"/>\r
 319                                                 <include name="commons-lang-*.jar"/>\r
 320                                                 <include name="commons-logging-*.jar"/>\r
 321                                         </fileset>\r
 322                                 </classpath>\r
 323                 </xjc>\r
 324         </target>\r
 325 \r
 326                                         -Xequals\r
 327                                         -XhashCode\r
 328                                         -Xcopyable\r
 329                                         -Xmergeable\r
 330 \r
 331         <target name="build-Clustal-client-from-live-server">\r
 332 \r
 333                 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl"\r
 334                         sourcedestdir="${basedir}/webservices/"\r
 335                         keep="true"\r
 336                         extension="false"\r
 337                         verbose="true"\r
 338                         xnocompile="true"\r
 339                         package="compbio.ws.client.stub"\r
 340                         quiet="false">\r
 341                 </wsimport>\r
 342         </target>\r
 343 \r
 344         <target name="build-Muscle-client-from-live-server">\r
 345                 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl"\r
 346                                         sourcedestdir="${basedir}/webservices/"\r
 347                                         keep="true"\r
 348                                         extension="false"\r
 349                                         verbose="true"\r
 350                                         xnocompile="true"\r
 351                                         package="compbio.ws.client.stub"\r
 352                                         quiet="false">\r
 353                 </wsimport>\r
 354         </target>\r
 355 \r
 356 \r
 357         <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">\r
 358                 <echo>Jar file: wsclient</echo>\r
 359                 <delete file="${basedir}/resources/wsclient.jar">\r
 360                 </delete>\r
 361                 <jar jarfile="${basedir}/resources/wsclient.jar">\r
 362                         <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />\r
 363                         <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />\r
 364                         <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />\r
 365                         <manifest>\r
 366                                 <attribute name="Built-By" value="${user.name}" />\r
 367                                 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />\r
 368                                 <attribute name="Class-Path" value="." />\r
 369                                 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />\r
 370                                 <attribute name="Implementation-Vendor" value="The PIMS team" />\r
 371                                 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />\r
 372                         </manifest>\r
 373                 </jar>\r
 374         </target>\r
 375 \r
 376 \r
 377         <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">\r
 378                 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">\r
 379                         <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />\r
 380                 </java>\r
 381         </target>\r
 382 \r
 383         <target name="run-client-class" description="THIS IS EXAMPLE ONLY">\r
 384                 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">\r
 385                         <classpath refid="project.classpath" />\r
 386                         <classpath refid="instrument.classpath" />\r
 387                 </java>\r
 388         </target>\r
 389 -->\r
 390 </project>\r
 391 \r