wsbuild.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 \r
   3 <project default="build-server" name="compbio-ws" basedir=".">\r
   4 \r
   5         <!-- java -->\r
   6         <property name="classes" location="${basedir}/WEB-INF/classes" />\r
   7         <property name="lib.path" location="${basedir}/WEB-INF/lib" />\r
   8 \r
   9         <path id="classes.path">\r
  10                 <pathelement location="${classes}" />\r
  11         </path>\r
  12 \r
  13         <!-- add libraries -->\r
  14         <path id="project.classpath">\r
  15                 <fileset dir="${lib.path}">\r
  16                         <include name="*.jar" />\r
  17                 </fileset>\r
  18         </path>\r
  19 \r
  20         <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />\r
  21         <property name="jpred.wsdl" location="${wsdl.dir}/JpredWS.wsdl" />\r
  22         <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />\r
  23         <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />\r
  24         <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />\r
  25         <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />\r
  26         <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />\r
  27         <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />\r
  28         <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />\r
  29         <property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />\r
  30         <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />\r
  31         <property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />\r
  32         <property name="rnaalifold.wsdl" location="${wsdl.dir}/RNAalifold.wsdl" />  \r
  33 \r
  34         <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">\r
  35                 <classpath refid="project.classpath" />\r
  36         </taskdef>\r
  37 \r
  38         <target name="build-server">\r
  39                 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->\r
  40                         <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />\r
  41 \r
  42                         <mkdir dir="${server.artifacts.dir}" />\r
  43                         <mkdir dir="${wsdl.dir}" />\r
  44                         <delete quiet="false" verbose="true" failonerror="false">\r
  45                                 <fileset dir="${server.artifacts.dir}">\r
  46                                         <include name="*.java" />\r
  47                                 </fileset>\r
  48                                 <fileset dir="${wsdl.dir}">\r
  49                                 </fileset>\r
  50                         </delete>\r
  51                         <!-- destdir - Where to put generated classes -->\r
  52                         <!-- sourcedestdir -  Where to put generated source files -->\r
  53                         <!-- resourcedestdir - Where to put generated source files -->\r
  54 \r
  55                 <wsgen sei="compbio.ws.server.JpredWS" \r
  56                                 sourcedestdir="${basedir}/webservices" \r
  57                                 destdir="${classes}" \r
  58                                 resourcedestdir="${wsdl.dir}" \r
  59                                 keep="true" genwsdl="true" \r
  60                                 extension="false"\r
  61                                 xendorsed="true"\r
  62                                 verbose="true">\r
  63                                 <classpath refid="classes.path" />\r
  64                                 <classpath refid="project.classpath" />\r
  65                 </wsgen>\r
  66                 <wsgen sei="compbio.ws.server.AAConWS" \r
  67                                 sourcedestdir="${basedir}/webservices" \r
  68                                 destdir="${classes}" \r
  69                                 resourcedestdir="${wsdl.dir}" \r
  70                                 keep="true" genwsdl="true" \r
  71                                 extension="false" \r
  72                                 xendorsed="true" \r
  73                                 verbose="true">\r
  74                                 <classpath refid="classes.path" />\r
  75                                 <classpath refid="project.classpath" />\r
  76                 </wsgen>\r
  77                 <wsgen sei="compbio.ws.server.ClustalWS" \r
  78                                 sourcedestdir="${basedir}/webservices" \r
  79                                 destdir="${classes}" \r
  80                                 resourcedestdir="${wsdl.dir}" \r
  81                                 keep="true" genwsdl="true" \r
  82                                 extension="false" \r
  83                                 xendorsed="true"\r
  84                                 verbose="true">\r
  85                                 <classpath refid="classes.path" />\r
  86                                 <classpath refid="project.classpath" />\r
  87                 </wsgen>\r
  88                 <wsgen sei="compbio.ws.server.MuscleWS" \r
  89                                 sourcedestdir="${basedir}/webservices" \r
  90                                 destdir="${classes}" \r
  91                                 resourcedestdir="${wsdl.dir}" \r
  92                                 keep="true" genwsdl="true" \r
  93                                 extension="false"\r
  94                                 xendorsed="true"\r
  95                                 verbose="true">\r
  96                                 <classpath refid="classes.path" />\r
  97                                 <classpath refid="project.classpath" />\r
  98                 </wsgen>\r
  99                 <wsgen sei="compbio.ws.server.MafftWS" \r
 100                                 sourcedestdir="${basedir}/webservices" \r
 101                                 destdir="${classes}" \r
 102                                 resourcedestdir="${wsdl.dir}" \r
 103                                 keep="true" genwsdl="true" \r
 104                                 extension="false"\r
 105                                 xendorsed="true"\r
 106                                 verbose="true">\r
 107                                 <classpath refid="classes.path" />\r
 108                                 <classpath refid="project.classpath" />\r
 109                 </wsgen>\r
 110                 <wsgen sei="compbio.ws.server.TcoffeeWS" \r
 111                                 sourcedestdir="${basedir}/webservices" \r
 112                                 destdir="${classes}" \r
 113                                 resourcedestdir="${wsdl.dir}" \r
 114                                 keep="true" genwsdl="true" \r
 115                                 extension="false" \r
 116                                 xendorsed="true" \r
 117                                 verbose="true">\r
 118                                 <classpath refid="classes.path" />\r
 119                                 <classpath refid="project.classpath" />\r
 120                 </wsgen>\r
 121                 <wsgen sei="compbio.ws.server.DisemblWS" \r
 122                                 sourcedestdir="${basedir}/webservices" \r
 123                                 destdir="${classes}" \r
 124                                 resourcedestdir="${wsdl.dir}" \r
 125                                 keep="true" genwsdl="true" \r
 126                                 extension="false" \r
 127                                 xendorsed="true" \r
 128                                 verbose="true">\r
 129                                 <classpath refid="classes.path" />\r
 130                                 <classpath refid="project.classpath" />\r
 131                 </wsgen>\r
 132                 <wsgen sei="compbio.ws.server.GlobPlotWS" \r
 133                                 sourcedestdir="${basedir}/webservices" \r
 134                                 destdir="${classes}" \r
 135                                 resourcedestdir="${wsdl.dir}" \r
 136                                 keep="true" genwsdl="true" \r
 137                                 extension="false" \r
 138                                 xendorsed="true" \r
 139                                 verbose="true">\r
 140                                 <classpath refid="classes.path" />\r
 141                                 <classpath refid="project.classpath" />\r
 142                 </wsgen>\r
 143                 <wsgen sei="compbio.ws.server.JronnWS" \r
 144                                 sourcedestdir="${basedir}/webservices" \r
 145                                 destdir="${classes}" \r
 146                                 resourcedestdir="${wsdl.dir}" \r
 147                                 keep="true" genwsdl="true" \r
 148                                 extension="false" \r
 149                                 xendorsed="true" \r
 150                                 verbose="true">\r
 151                                 <classpath refid="classes.path" />\r
 152                                 <classpath refid="project.classpath" />\r
 153                 </wsgen>\r
 154                 <wsgen sei="compbio.ws.server.IUPredWS" \r
 155                                 sourcedestdir="${basedir}/webservices" \r
 156                                 destdir="${classes}" \r
 157                                 resourcedestdir="${wsdl.dir}" \r
 158                                 keep="true" genwsdl="true" \r
 159                                 extension="false" \r
 160                                 xendorsed="true" \r
 161                                 verbose="true">\r
 162                                 <classpath refid="classes.path" />\r
 163                                 <classpath refid="project.classpath" />\r
 164                 </wsgen>\r
 165                 <wsgen sei="compbio.ws.server.RegistryWS" \r
 166                                 sourcedestdir="${basedir}/webservices" \r
 167                                 destdir="${classes}" \r
 168                                 resourcedestdir="${wsdl.dir}" \r
 169                                 keep="true" genwsdl="true" \r
 170                                 extension="false" \r
 171                                 xendorsed="true" \r
 172                                 verbose="true">\r
 173                                 <classpath refid="classes.path" />\r
 174                                 <classpath refid="project.classpath" />\r
 175                 </wsgen>\r
 176                 <wsgen sei="compbio.ws.server.RNAalifoldWS"\r
 177                                 sourcedestdir="${basedir}/webservices"\r
 178                                 destdir="${classes}"\r
 179                                 resourcedestdir="${wsdl.dir}"\r
 180                                 keep="true" genwsdl="true"\r
 181                                 extension="false"\r
 182                                 xendorsed="true"\r
 183                                 verbose="true">\r
 184                                 <classpath refid="classes.path" />\r
 185                                 <classpath refid="project.classpath" />\r
 186                 </wsgen>\r
 187                 \r
 188         </target>\r
 189                 \r
 190 \r
 191         <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">\r
 192                 <classpath refid="project.classpath" />\r
 193         </taskdef>\r
 194 \r
 195         <target name="build-clients">\r
 196                         <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />\r
 197 \r
 198                         <mkdir dir="${client.artifacts.dir}" />\r
 199                         <delete quiet="false" verbose="true" failonerror="true">\r
 200                                 <fileset dir="${client.artifacts.dir}">\r
 201                                         <include name="*.java" />\r
 202                                 </fileset>\r
 203                         </delete>\r
 204                         <wsimport wsdl="${clustal.wsdl}" \r
 205                                 sourcedestdir="${basedir}/webservices/" \r
 206                                 keep="true" extension="false" \r
 207                                 verbose="true" xnocompile="true" xendorsed="true"\r
 208                                 package="compbio.ws.client.stub" target="2.1"\r
 209                                 quiet="false">\r
 210                         </wsimport>\r
 211                         <wsimport wsdl="${muscle.wsdl}" \r
 212                                 sourcedestdir="${basedir}/webservices/" \r
 213                                 keep="true" extension="false" \r
 214                                 verbose="true" xnocompile="true" xendorsed="true"\r
 215                                 package="compbio.ws.client.stub" target="2.1"\r
 216                                 quiet="false">\r
 217                         </wsimport>\r
 218                         <wsimport wsdl="${mafft.wsdl}" \r
 219                                 sourcedestdir="${basedir}/webservices/" \r
 220                                 keep="true" extension="false" \r
 221                                 verbose="true" xnocompile="true" xendorsed="true"\r
 222                                 package="compbio.ws.client.stub" target="2.1"\r
 223                                 quiet="false">\r
 224                         </wsimport>\r
 225                         <wsimport wsdl="${tcoffee.wsdl}" \r
 226                                 sourcedestdir="${basedir}/webservices/" \r
 227                                 keep="true" extension="false" \r
 228                                 verbose="true" xnocompile="true" xendorsed="true"\r
 229                                 package="compbio.ws.client.stub" target="2.1"\r
 230                                 quiet="false">\r
 231                         </wsimport>\r
 232                         <wsimport wsdl="${iupred.wsdl}" \r
 233                                 sourcedestdir="${basedir}/webservices/" \r
 234                                 keep="true" extension="false" \r
 235                                 verbose="true" xnocompile="true" xendorsed="true"\r
 236                                 package="compbio.ws.client.stub" target="2.1"\r
 237                                 quiet="false">\r
 238                         </wsimport>\r
 239                         <wsimport wsdl="${registry.wsdl}" \r
 240                                 sourcedestdir="${basedir}/webservices/" \r
 241                                 keep="true" extension="false" \r
 242                                 verbose="true" xnocompile="true" xendorsed="true"\r
 243                                 package="compbio.ws.client.stub" target="2.1"\r
 244                                 quiet="false">\r
 245                         </wsimport>\r
 246                         <wsimport wsdl="${rnaalifold.wsdl}" \r
 247                                 sourcedestdir="${basedir}/webservices/" \r
 248                                 keep="true" extension="false" \r
 249                                 verbose="true" xnocompile="true" xendorsed="true"\r
 250                                 package="compbio.ws.client.stub" target="2.1"\r
 251                                 quiet="false">\r
 252                         </wsimport>\r
 253                         \r
 254                 </target>\r
 255 \r
 256         <!-- \r
 257         <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">\r
 258                 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">\r
 259                         <classpath refid="project.classpath" />\r
 260                 </taskdef>\r
 261                 <mkdir dir="${basedir}/src/test" />\r
 262                 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">\r
 263                         <arg value="-Xcommons-lang" />\r
 264                 \r
 265                         <produces dir="${basedir}/src/test" />\r
 266                         <classpath refid="classes.path" />\r
 267                         <classpath>\r
 268                                         <fileset dir="${basedir}/lib">\r
 269                                                  //JAXB2 Basics library \r
 270                                                 <include name="jaxb2-basics-*.jar"/>\r
 271                                                  // JAXB2 Basics library dependencies \r
 272                                                 <include name="jaxb2-basics-runtime-*.jar"/>\r
 273                                                 <include name="jaxb2-basics-tools-*.jar"/>\r
 274                                                 <include name="commons-beanutils-*.jar"/>\r
 275                                                 <include name="commons-lang-*.jar"/>\r
 276                                                 <include name="commons-logging-*.jar"/>\r
 277                                         </fileset>\r
 278                                 </classpath>\r
 279                 </xjc>\r
 280         </target>\r
 281 \r
 282                                         -Xequals\r
 283                                         -XhashCode\r
 284                                         -Xcopyable\r
 285                                         -Xmergeable\r
 286 \r
 287         <target name="build-Clustal-client-from-live-server">\r
 288 \r
 289                 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl" \r
 290                         sourcedestdir="${basedir}/webservices/" \r
 291                         keep="true" \r
 292                         extension="false" \r
 293                         verbose="true" \r
 294                         xnocompile="true" \r
 295                         package="compbio.ws.client.stub" \r
 296                         quiet="false">\r
 297                 </wsimport>\r
 298         </target>\r
 299 \r
 300         <target name="build-Muscle-client-from-live-server">\r
 301                 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl" \r
 302                                         sourcedestdir="${basedir}/webservices/" \r
 303                                         keep="true" \r
 304                                         extension="false" \r
 305                                         verbose="true" \r
 306                                         xnocompile="true" \r
 307                                         package="compbio.ws.client.stub" \r
 308                                         quiet="false">\r
 309                 </wsimport>\r
 310         </target>\r
 311 \r
 312 \r
 313         <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">\r
 314                 <echo>Jar file: wsclient</echo>\r
 315                 <delete file="${basedir}/resources/wsclient.jar">\r
 316                 </delete>\r
 317                 <jar jarfile="${basedir}/resources/wsclient.jar">\r
 318                         <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />\r
 319                         <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />\r
 320                         <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />\r
 321                         <manifest>\r
 322                                 <attribute name="Built-By" value="${user.name}" />\r
 323                                 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />\r
 324                                 <attribute name="Class-Path" value="." />\r
 325                                 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />\r
 326                                 <attribute name="Implementation-Vendor" value="The PIMS team" />\r
 327                                 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />\r
 328                         </manifest>\r
 329                 </jar>\r
 330         </target>\r
 331 \r
 332 \r
 333         <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">\r
 334                 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">\r
 335                         <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />\r
 336                 </java>\r
 337         </target>\r
 338 \r
 339         <target name="run-client-class" description="THIS IS EXAMPLE ONLY">\r
 340                 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">\r
 341                         <classpath refid="project.classpath" />\r
 342                         <classpath refid="instrument.classpath" />\r
 343                 </java>\r
 344         </target>\r
 345 -->\r
 346 </project>\r
 347 \r