WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / convert__epars_8h_source.html
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+   <div id="projectname">RNAlib-2.1.2
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+<!-- Generated by Doxygen 1.8.1.1 -->
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+$(document).ready(function(){initNavTree('convert__epars_8h.html','');});
+</script>
+<div id="doc-content">
+<div class="header">
+  <div class="headertitle">
+<div class="title">convert_epars.h</div>  </div>
+</div><!--header-->
+<div class="contents">
+<a href="convert__epars_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_CONVERT_EPARS_H__</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_CONVERT_EPARS_H__</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00018"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga8dc6aee5a806c49b71557152f9616bc4">   18</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_ALL           1U</span></div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00020"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaf66fe2cb11dfcfd32d791049c254a8a4">   20</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_HP            2U</span></div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00022"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gad23522d63f8d4c50d5a5deee9bee3ef2">   22</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_STACK         4U</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00024"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaa892c7b4957459090f3e08da298cc347">   24</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_HP         8U</span></div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00026"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga4ff223fb1f9c62cd92d9ab811ad03d55">   26</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_INT        16U</span></div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00028"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaf5d3743219f83c6348155cd81e755bbb">   28</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_INT_1N     32U</span></div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00030"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga78382ec622ba99e0ac2262317bdd7316">   30</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_INT_23     64U</span></div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00032"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gae67af9f1cdf7baf2865481282a5d1034">   32</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_MULTI      128U</span></div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00034"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaf14ead7ef1fdbe725ade653750fc51e3">   34</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MM_EXT        256U</span></div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00036"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga036ffd996d8c8a9acf631760dd1da24b">   36</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_DANGLE5       512U</span></div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00038"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga34a8a5479ef885834ef32f3fb43d79bc">   38</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_DANGLE3       1024U</span></div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00040"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga079aafefd5f8ab57ee5120099a34bd25">   40</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_INT_11        2048U</span></div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00042"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gacf770881d9034431ebe741642342a1f9">   42</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_INT_21        4096U</span></div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00044"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaa307671e2631cdacad9cbe4c6583b05f">   44</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_INT_22        8192U</span></div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00046"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga7092fe0be4de6f02cc0bf08e81af726a">   46</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_BULGE         16384U</span></div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00048"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gac5c2289fdf8ff1b980976d1613ff943a">   48</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_INT           32768U</span></div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00050"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaf2c8755d64eff3852aa45df9ac80a4fe">   50</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_ML            65536U</span></div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00052"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga46d5b1535ae86060b6317565b7c6b40b">   52</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_MISC          131072U</span></div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00054"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gaa1ff48a79642d69579d1766561ec6db6">   54</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_SPECIAL_HP    262144U</span></div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00056"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga0d4e8a836bb4864ab5129c085dbf592d">   56</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_VANILLA       524288U</span></div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00058"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#ga2eb0462f16939ddacdaf751a88d675ce">   58</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_NINIO         1048576U</span></div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00060"></a><span class="lineno"><a class="code" href="group__energy__parameters__convert.html#gac86976e9c2a55b3a6481ea60044f6098">   60</a></span>&#160;<span class="preprocessor">#define VRNA_CONVERT_OUTPUT_DUMP          2097152U</span></div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;<span class="preprocessor"></span></div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;<span class="keywordtype">void</span> <a class="code" href="group__energy__parameters__convert.html#gafbe538bc4eb2cf2a33326e1010005f8a">convert_parameter_file</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *iname,</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;                            <span class="keyword">const</span> <span class="keywordtype">char</span> *oname,</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;                            <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> options);</div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
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+    <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="convert__epars_8h.html">convert_epars.h</a></li>
+    <li class="footer">Generated on Wed Jul 24 2013 13:38:55 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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