web site update new pages for awss beanstalk deployment

[jabaws.git] / website / manual_qs_war.html

diff --git a/website/manual_qs_war.html b/website/manual_qs_war.html
index 5dc65c3..9ce3951 100644 (file)
--- a/website/manual_qs_war.html
+++ b/website/manual_qs_war.html
@@ -26,8 +26,9 @@
     <a class="selected" href="quick_start.html">Getting Started</a> \r
     <a href="man_about.html">Manual</a> \r
        <a href="download.html">Download</a>\r
-       <a href="contacts.html">Contact Us</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+       <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 \r
 </div><!-- panel end-->\r
@@ -49,7 +50,7 @@
 </tr>\r
 <tr>\r
   <td>Running JABAWS  on the <strong>cloud</strong>, for one or many users</td>\r
-  <td><a href="man_awscloud.html">JABAWS AMI</a></td>\r
+  <td><a href="man_awscloud.html">JABAWS on the Amazon cloud </a></td>\r
 </tr>\r
 <tr>\r
        <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
@@ -74,24 +75,25 @@
   <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
   <li>(Re)start the Tomcat.</li>\r
   <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>\r
-  <li>You then need to complete the installation of the executable binaries:</li>\r
+  <li> You then need to complete the installation of the executable binaries (this is optional if you use 32 bit version of Linux):</li>\r
    <ul>\r
      <li>If you are on Linux or Mac (OSX intel Mac only) <br/>\r
        <span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./setexecflag.sh </span> script to ensure the JABAWS binaries can be executed. </li>\r
-       <li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>\r
-       <li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
-  <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>\r
-  </ul>\r
+     <li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>\r
+     <li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
+     <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>\r
+   </ul>\r
 </ol> \r
 \r
 <h3>Testing</h3>\r
-<p>You can test that your JABAWS server is working in two ways.</p>\r
+<p>You can test that your JABAWS server is working in several ways.</p>\r
 <ol>\r
+<li>Visit Services Status page available from the main menu using your web browser.</li>\r
+\r
 <li>If you are working on the command line, then use the command line client shipped with the JABAWS war to test it by running:\r
-<span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>\r
-In this example we assumed that your JABAWS server URL is <span class="hightlight">http://localhost:8080</span> and JABAWS context path is <span class="hightlight">jabaws</span>\r
+  <span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>\r
+  In this example we assumed that your JABAWS server URL is <span class="hightlight">http://localhost:8080</span> and JABAWS context path is <span class="hightlight">jabaws</span>\r
 </li>\r
-\r
 <li>Alternately, you can point Jalview at your new server:\r
 <ul>\r
   <li>Launch the desktop version of <a href="http://www.jalview.org/download.html">Jalview</a></li>\r
@@ -103,7 +105,7 @@ In this example we assumed that your JABAWS server URL is <span class="hightligh
 <!--  TODO put JABAWS CMD test instructions here -->\r
 </div> <!-- content end-->\r
 <!-- about end-->\r
-<div id="copyright">Last update: 10 August 2011<br/>\r
+<div id="copyright">Last update: 16 September 2011<br/>\r
 Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
 \r
 </div><!-- wrapper end -->\r